jgi.p|Nanoce1779_2|526228, mRNA_3054 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|526228
Unique NamemRNA_3054
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length255
Alignment locationscaffold_7:557272..557526 -

Link to JBrowse

Properties
Property NameValue
TranscriptId526314
TrackFilteredModels2
ProteinId526228
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:557272..557526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526228gene_3054Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3054CDS_3054Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526228mRNA_3054-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3054 ID=mRNA_3054|Name=jgi.p|Nanoce1779_2|526228|organism=Nannochloropsis oceanica|type=mRNA|length=255bp
ATGGTGACTGCGCAAGACGGTCATGTGTTTTCGTGTGTGTTCGATCAATC
TTCCTTTCCCATGCTGTGTTTTTATCAGAATGGGAAGGAATTGGAGGGTA
AGGCTGTCAATCGCGTGCGAGGCTTAGTTTTCCCAGCACTCCAAGTATTC
GGGGAGGGGGCGGAGCTCTCATTTCTTTTTCACGAAAATGACTGGACTCA
TCCACCACCCTCAAGCCGGCATATGATGATTCTTGAGACGCGGAATATGA
TTTAA
back to top

protein sequence of jgi.p|Nanoce1779_2|526228

>mRNA_3054-protein ID=mRNA_3054-protein|Name=jgi.p|Nanoce1779_2|526228|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MVTAQDGHVFSCVFDQSSFPMLCFYQNGKELEGKAVNRVRGLVFPALQVF
GEGAELSFLFHENDWTHPPPSSRHMMILETRNMI*
back to top

mRNA from alignment at scaffold_7:557272..557526-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3054 ID=mRNA_3054|Name=jgi.p|Nanoce1779_2|526228|organism=Nannochloropsis oceanica|type=mRNA|length=255bp|location=Sequence derived from alignment at scaffold_7:557272..557526- (Nannochloropsis oceanica)
ATGGTGACTGCGCAAGACGGTCATGTGTTTTCGTGTGTGTTCGATCAATC
TTCCTTTCCCATGCTGTGTTTTTATCAGAATGGGAAGGAATTGGAGGGTA
AGGCTGTCAATCGCGTGCGAGGCTTAGTTTTCCCAGCACTCCAAGTATTC
GGGGAGGGGGCGGAGCTCTCATTTCTTTTTCACGAAAATGACTGGACTCA
TCCACCACCCTCAAGCCGGCATATGATGATTCTTGAGACGCGGAATATGA
TTTAA
back to top

Coding sequence (CDS) from alignment at scaffold_7:557272..557526-

>mRNA_3054 ID=mRNA_3054|Name=jgi.p|Nanoce1779_2|526228|organism=Nannochloropsis oceanica|type=CDS|length=255bp|location=Sequence derived from alignment at scaffold_7:557272..557526- (Nannochloropsis oceanica)
ATGGTGACTGCGCAAGACGGTCATGTGTTTTCGTGTGTGTTCGATCAATC
TTCCTTTCCCATGCTGTGTTTTTATCAGAATGGGAAGGAATTGGAGGGTA
AGGCTGTCAATCGCGTGCGAGGCTTAGTTTTCCCAGCACTCCAAGTATTC
GGGGAGGGGGCGGAGCTCTCATTTCTTTTTCACGAAAATGACTGGACTCA
TCCACCACCCTCAAGCCGGCATATGATGATTCTTGAGACGCGGAATATGA
TTTAA
back to top
Synonyms
Publications