jgi.p|Nanoce1779_2|584373, mRNA_3052 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584373
Unique NamemRNA_3052
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length476
Alignment locationscaffold_7:553054..553529 +

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Properties
Property NameValue
TranscriptId584459
TrackFilteredModels2
ProteinId584373
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:553054..553529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584373gene_3052Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584373mRNA_3052-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3052CDS_3052Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3052 ID=mRNA_3052|Name=jgi.p|Nanoce1779_2|584373|organism=Nannochloropsis oceanica|type=mRNA|length=476bp
CTCCTTCCTGCCCTTTCCATCTTCTCTCTCCAAATGGTGCCGCTTCTCAT
TCCTCTTTTCCTTCTCCCTTCTTCTCTCCCGATCCCAGTCCACATTCACA
TCAGGTGCCCCAACGTCTACAGGCCATCGATGTTCCTCTCTACCTCCTTT
GCTCTCTTTGTGCTGAGGATGACGATGGTGGTGCGAAGAGTGATGAAGCT
CAGGATGATAACCACGACTGCTTCCCCCTCTTTCTCTCTCCATGCTTCGG
CTTCGACTGCGTTTGTTCATTCCTTCGCCACTACCCCCGTCGTCGTTCTC
GGTTTCGTTCTCTTGCTTCACGACTTCTCGAACGTCTCCCTCGTTCTCGG
TAGTGGTGGTGGTGCTGGTGGGAAGGAGGAGGCAGACGACGGTTAGGGAT
GACTTCATTCCCTCGTCGGCTGGGACTCCGAGAATGTGAGCGGGAACGAT
CCCTCCCCACGCCCATGATAAGCTGT
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protein sequence of jgi.p|Nanoce1779_2|584373

>mRNA_3052-protein ID=mRNA_3052-protein|Name=jgi.p|Nanoce1779_2|584373|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MVPLLIPLFLLPSSLPIPVHIHIRCPNVYRPSMFLSTSFALFVLRMTMVV
RRVMKLRMITTTASPSFSLHASASTAFVHSFATTPVVVLGFVLLLHDFSN
VSLVL
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mRNA from alignment at scaffold_7:553054..553529+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3052 ID=mRNA_3052|Name=jgi.p|Nanoce1779_2|584373|organism=Nannochloropsis oceanica|type=mRNA|length=476bp|location=Sequence derived from alignment at scaffold_7:553054..553529+ (Nannochloropsis oceanica)
CTCCTTCCTGCCCTTTCCATCTTCTCTCTCCAAATGGTGCCGCTTCTCAT
TCCTCTTTTCCTTCTCCCTTCTTCTCTCCCGATCCCAGTCCACATTCACA
TCAGGTGCCCCAACGTCTACAGGCCATCGATGTTCCTCTCTACCTCCTTT
GCTCTCTTTGTGCTGAGGATGACGATGGTGGTGCGAAGAGTGATGAAGCT
CAGGATGATAACCACGACTGCTTCCCCCTCTTTCTCTCTCCATGCTTCGG
CTTCGACTGCGTTTGTTCATTCCTTCGCCACTACCCCCGTCGTCGTTCTC
GGTTTCGTTCTCTTGCTTCACGACTTCTCGAACGTCTCCCTCGTTCTCGG
TAGTGGTGGTGGTGCTGGTGGGAAGGAGGAGGCAGACGACGGTTAGGGAT
GACTTCATTCCCTCGTCGGCTGGGACTCCGAGAATGTGAGCGGGAACGAT
CCCTCCCCACGCCCATGATAAGCTGT
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Coding sequence (CDS) from alignment at scaffold_7:553054..553529+

>mRNA_3052 ID=mRNA_3052|Name=jgi.p|Nanoce1779_2|584373|organism=Nannochloropsis oceanica|type=CDS|length=316bp|location=Sequence derived from alignment at scaffold_7:553054..553529+ (Nannochloropsis oceanica)
ATGGTGCCGCTTCTCATTCCTCTTTTCCTTCTCCCTTCTTCTCTCCCGAT
CCCAGTCCACATTCACATCAGGTGCCCCAACGTCTACAGGCCATCGATGT
TCCTCTCTACCTCCTTTGCTCTCTTTGTGCTGAGGATGACGATGGTGGTG
CGAAGAGTGATGAAGCTCAGGATGATAACCACGACTGCTTCCCCCTCTTT
CTCTCTCCATGCTTCGGCTTCGACTGCGTTTGTTCATTCCTTCGCCACTA
CCCCCGTCGTCGTTCTCGGTTTCGTTCTCTTGCTTCACGACTTCTCGAAC
GTCTCCCTCGTTCTCG
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Synonyms
Publications