jgi.p|Nanoce1779_2|553550, mRNA_3051 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|553550
Unique NamemRNA_3051
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2301
Alignment locationscaffold_7:550778..553078 -

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Properties
Property NameValue
TranscriptId553636
TrackFilteredModels2
ProteinId553550
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:550778..553078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553550gene_3051Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553550mRNA_3051-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3051CDS_3051Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3051 ID=mRNA_3051|Name=jgi.p|Nanoce1779_2|553550|organism=Nannochloropsis oceanica|type=mRNA|length=2301bp
AGAAGATGGAAAGGGCAGGAAGGAGAAAGAAGATGGAAAGGACAGGAAGG
GAGGCGGTGGTGGAGTTGGGAGTAAGCGTGTGAAGGGTCATAGCGAGTGG
AACGGCAGCAGCCAAAAATTGAGGCGAAGCAGTGGAAGCAAGAAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGTTCCTTTGAATTTGGACGAAGAGAGCA
TGCGTTTGATGATGATGGCGAGTGGTGGCTTGGGGGTGGAAGACGAGAAA
AATGAGGAGGAAAGATTGCTGGCGGAGCGGAAACGGAAGCGGGAAGACAT
CGAGGCCTTGTACCGGAACAAGGAAGGGGGAGAAGGCGGGAGGAAAGGCG
GGCGGGATGACCAGAAGAGTAACGGCGGCAGTGGACCAGCGGAGGAGGAC
CCGCCTGCGTCGCCGGTAATGCGCCAAGGAGGGCCCAGTGGGATTGCTCT
TACTCCGGATAACGACGACGAGGACGGCGAAGAGGACGAAGGCCCAATTG
ACGTGTGCGTGCACAACAAGCCCTTGACGGAAGGGGAGCAACATGAGATG
GATGAAGGACATATTGACACGGTCCGTGGGGGGCAGGTAGAGGCGCCGGA
AAAGGAAGAGTTTTTGCTTGACATGTTTTCTCTTTCTCCGGGCAAAGCCG
CGCTGGGGGCAGGCGGGGTGTTACTGGCTGGTGGGGCTGGGGGTGGGAAG
GGGAGGATAGCTTTGGCGTCGGCAGGGGCGGCGGCAAGGGGGGGAAAGGA
TGCAGCAGACACGTTGGAGGATAATTGGGACGATCACGAGGGGTATTACA
AGACTTTGGTCGGCGAGGTGATAGCCGATAGGTACCTTGTCCTAGGATCG
ATTGGAAGGGGGGTGTTCAGCACTGTGCTACGGTGTCGGGATTTGAAACC
AGGGGAGGGGGGGCCGGCGGTGGTGGCGGTAAAGATTATTAGGAACAATG
ACGTGATGCGGAAGGCGGCGCAGAGGGAATTGGACGTATTGAAGGCATTA
GCGGCCGCTGATCCGGAGAATAGGAAGCATTGCGTGCGGCTTGTAACCCA
TCTCGAGCATCGACAGCATGTAGTGATGGTATTTGAAAGTCTGCAAATGA
ATTTAAGAGAGACTCTTCGAAAATTCGGAAAGCATGTTGGGTTGAATATA
GCGGCGGTACGGACCTATGCCAAGCAGTTGTTGATTGCCCTGAGGCATAT
TGGGCATCAGGGTATCGTGCACGCGGACATCAAGCCTGACAACATATTGG
TGTCCGAGGGGTTTGGACAGTTGAAGTTGTGTGATTTTGGGAGTTCCTTC
CGGGAAGAGGCCGGGGACAATGACCCGACACCGTATTTGGTGAGTCGCTT
TTATCGCGCGCCCGAGGTTGTGTTGGGGTTTGAGTATGGCCGAGGGGTAG
ATTTGTGGAGTGTCGGCTGTTGCTTGTACGAGCTGTTTACGGGACGGGTG
GCCTTCCCTGGGAGCACCAATAATGAAATGCTCAGGTTGATGATGGAGGT
GAAGGGAGGCTTGACGCAGAAGGTGGTGAGGAGGCATCGGGCCGCGTACG
AGACGTTAAAGTTGGAGCCCATGTTCGAGCCGGACGGACGTTTCAGACAG
CAGGAGATGGACCCGGTAACTAAGATGCCTGTGTTGCGAATTGTACATGT
GCCGCCGCAGCCGACAAGAGATTTGACGGGGGTTTTGCTCAAGGCCAAGG
CGGCTTCAGATGATAAAGCGCTGGTCCTCAATTTGGGCGACTTGTTGGAG
AAGATCTTTGTGCTGGATAGCAGCAAACGAATTACAGTACGGGATGCGTT
GCACCACCCTTTTTTTATGTCATCTTCCTCGTCGTCATCATCGTCGTCGA
GTGGGCGTGCTAATGGTGGTGGTGCTAGGAATAAGTAAGTTTTGGATGGT
AGGTGAATTGCCTGTTTTAAGTCCCGCCAACGATAACTTGTCCTTACTGT
GTTCTAAACTATAAAACGTTAGAATATGACAAGGCACAACAGAAATTCCA
CACGTTTCTGGCTCACAAGTTTTGAAGAAACAACTTAAAGTAGGAAAAAT
AATAATGATATTGACAATATTAATTATATTTAATATTTATACATCTATTT
ATCGCGTGCAACCTCTGCAGATGTTCAAGACACGAGTGACAAATGCAAAC
ACAAGGCACACGGGCGCTTATTCCCGAAACACTTTTTGCTTGATGATATA
TCCTTTGATCGATAGTTTCATATGGTAGAGCGCCAATCCACCATTTTTAT
TGCTATTTTTCGATTGATCGAGGGGTATCAACGCCCCGCTTTCAACCAAC
C
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protein sequence of jgi.p|Nanoce1779_2|553550

>mRNA_3051-protein ID=mRNA_3051-protein|Name=jgi.p|Nanoce1779_2|553550|organism=Nannochloropsis oceanica|type=polypeptide|length=563bp
MRLMMMASGGLGVEDEKNEEERLLAERKRKREDIEALYRNKEGGEGGRKG
GRDDQKSNGGSGPAEEDPPASPVMRQGGPSGIALTPDNDDEDGEEDEGPI
DVCVHNKPLTEGEQHEMDEGHIDTVRGGQVEAPEKEEFLLDMFSLSPGKA
ALGAGGVLLAGGAGGGKGRIALASAGAAARGGKDAADTLEDNWDDHEGYY
KTLVGEVIADRYLVLGSIGRGVFSTVLRCRDLKPGEGGPAVVAVKIIRNN
DVMRKAAQRELDVLKALAAADPENRKHCVRLVTHLEHRQHVVMVFESLQM
NLRETLRKFGKHVGLNIAAVRTYAKQLLIALRHIGHQGIVHADIKPDNIL
VSEGFGQLKLCDFGSSFREEAGDNDPTPYLVSRFYRAPEVVLGFEYGRGV
DLWSVGCCLYELFTGRVAFPGSTNNEMLRLMMEVKGGLTQKVVRRHRAAY
ETLKLEPMFEPDGRFRQQEMDPVTKMPVLRIVHVPPQPTRDLTGVLLKAK
AASDDKALVLNLGDLLEKIFVLDSSKRITVRDALHHPFFMSSSSSSSSSS
SGRANGGGARNK*
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mRNA from alignment at scaffold_7:550778..553078-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3051 ID=mRNA_3051|Name=jgi.p|Nanoce1779_2|553550|organism=Nannochloropsis oceanica|type=mRNA|length=2301bp|location=Sequence derived from alignment at scaffold_7:550778..553078- (Nannochloropsis oceanica)
AGAAGATGGAAAGGGCAGGAAGGAGAAAGAAGATGGAAAGGACAGGAAGG
GAGGCGGTGGTGGAGTTGGGAGTAAGCGTGTGAAGGGTCATAGCGAGTGG
AACGGCAGCAGCCAAAAATTGAGGCGAAGCAGTGGAAGCAAGAAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGTTCCTTTGAATTTGGACGAAGAGAGCA
TGCGTTTGATGATGATGGCGAGTGGTGGCTTGGGGGTGGAAGACGAGAAA
AATGAGGAGGAAAGATTGCTGGCGGAGCGGAAACGGAAGCGGGAAGACAT
CGAGGCCTTGTACCGGAACAAGGAAGGGGGAGAAGGCGGGAGGAAAGGCG
GGCGGGATGACCAGAAGAGTAACGGCGGCAGTGGACCAGCGGAGGAGGAC
CCGCCTGCGTCGCCGGTAATGCGCCAAGGAGGGCCCAGTGGGATTGCTCT
TACTCCGGATAACGACGACGAGGACGGCGAAGAGGACGAAGGCCCAATTG
ACGTGTGCGTGCACAACAAGCCCTTGACGGAAGGGGAGCAACATGAGATG
GATGAAGGACATATTGACACGGTCCGTGGGGGGCAGGTAGAGGCGCCGGA
AAAGGAAGAGTTTTTGCTTGACATGTTTTCTCTTTCTCCGGGCAAAGCCG
CGCTGGGGGCAGGCGGGGTGTTACTGGCTGGTGGGGCTGGGGGTGGGAAG
GGGAGGATAGCTTTGGCGTCGGCAGGGGCGGCGGCAAGGGGGGGAAAGGA
TGCAGCAGACACGTTGGAGGATAATTGGGACGATCACGAGGGGTATTACA
AGACTTTGGTCGGCGAGGTGATAGCCGATAGGTACCTTGTCCTAGGATCG
ATTGGAAGGGGGGTGTTCAGCACTGTGCTACGGTGTCGGGATTTGAAACC
AGGGGAGGGGGGGCCGGCGGTGGTGGCGGTAAAGATTATTAGGAACAATG
ACGTGATGCGGAAGGCGGCGCAGAGGGAATTGGACGTATTGAAGGCATTA
GCGGCCGCTGATCCGGAGAATAGGAAGCATTGCGTGCGGCTTGTAACCCA
TCTCGAGCATCGACAGCATGTAGTGATGGTATTTGAAAGTCTGCAAATGA
ATTTAAGAGAGACTCTTCGAAAATTCGGAAAGCATGTTGGGTTGAATATA
GCGGCGGTACGGACCTATGCCAAGCAGTTGTTGATTGCCCTGAGGCATAT
TGGGCATCAGGGTATCGTGCACGCGGACATCAAGCCTGACAACATATTGG
TGTCCGAGGGGTTTGGACAGTTGAAGTTGTGTGATTTTGGGAGTTCCTTC
CGGGAAGAGGCCGGGGACAATGACCCGACACCGTATTTGGTGAGTCGCTT
TTATCGCGCGCCCGAGGTTGTGTTGGGGTTTGAGTATGGCCGAGGGGTAG
ATTTGTGGAGTGTCGGCTGTTGCTTGTACGAGCTGTTTACGGGACGGGTG
GCCTTCCCTGGGAGCACCAATAATGAAATGCTCAGGTTGATGATGGAGGT
GAAGGGAGGCTTGACGCAGAAGGTGGTGAGGAGGCATCGGGCCGCGTACG
AGACGTTAAAGTTGGAGCCCATGTTCGAGCCGGACGGACGTTTCAGACAG
CAGGAGATGGACCCGGTAACTAAGATGCCTGTGTTGCGAATTGTACATGT
GCCGCCGCAGCCGACAAGAGATTTGACGGGGGTTTTGCTCAAGGCCAAGG
CGGCTTCAGATGATAAAGCGCTGGTCCTCAATTTGGGCGACTTGTTGGAG
AAGATCTTTGTGCTGGATAGCAGCAAACGAATTACAGTACGGGATGCGTT
GCACCACCCTTTTTTTATGTCATCTTCCTCGTCGTCATCATCGTCGTCGA
GTGGGCGTGCTAATGGTGGTGGTGCTAGGAATAAGTAAGTTTTGGATGGT
AGGTGAATTGCCTGTTTTAAGTCCCGCCAACGATAACTTGTCCTTACTGT
GTTCTAAACTATAAAACGTTAGAATATGACAAGGCACAACAGAAATTCCA
CACGTTTCTGGCTCACAAGTTTTGAAGAAACAACTTAAAGTAGGAAAAAT
AATAATGATATTGACAATATTAATTATATTTAATATTTATACATCTATTT
ATCGCGTGCAACCTCTGCAGATGTTCAAGACACGAGTGACAAATGCAAAC
ACAAGGCACACGGGCGCTTATTCCCGAAACACTTTTTGCTTGATGATATA
TCCTTTGATCGATAGTTTCATATGGTAGAGCGCCAATCCACCATTTTTAT
TGCTATTTTTCGATTGATCGAGGGGTATCAACGCCCCGCTTTCAACCAAC
C
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Coding sequence (CDS) from alignment at scaffold_7:550778..553078-

>mRNA_3051 ID=mRNA_3051|Name=jgi.p|Nanoce1779_2|553550|organism=Nannochloropsis oceanica|type=CDS|length=1689bp|location=Sequence derived from alignment at scaffold_7:550778..553078- (Nannochloropsis oceanica)
ATGCGTTTGATGATGATGGCGAGTGGTGGCTTGGGGGTGGAAGACGAGAA
AAATGAGGAGGAAAGATTGCTGGCGGAGCGGAAACGGAAGCGGGAAGACA
TCGAGGCCTTGTACCGGAACAAGGAAGGGGGAGAAGGCGGGAGGAAAGGC
GGGCGGGATGACCAGAAGAGTAACGGCGGCAGTGGACCAGCGGAGGAGGA
CCCGCCTGCGTCGCCGGTAATGCGCCAAGGAGGGCCCAGTGGGATTGCTC
TTACTCCGGATAACGACGACGAGGACGGCGAAGAGGACGAAGGCCCAATT
GACGTGTGCGTGCACAACAAGCCCTTGACGGAAGGGGAGCAACATGAGAT
GGATGAAGGACATATTGACACGGTCCGTGGGGGGCAGGTAGAGGCGCCGG
AAAAGGAAGAGTTTTTGCTTGACATGTTTTCTCTTTCTCCGGGCAAAGCC
GCGCTGGGGGCAGGCGGGGTGTTACTGGCTGGTGGGGCTGGGGGTGGGAA
GGGGAGGATAGCTTTGGCGTCGGCAGGGGCGGCGGCAAGGGGGGGAAAGG
ATGCAGCAGACACGTTGGAGGATAATTGGGACGATCACGAGGGGTATTAC
AAGACTTTGGTCGGCGAGGTGATAGCCGATAGGTACCTTGTCCTAGGATC
GATTGGAAGGGGGGTGTTCAGCACTGTGCTACGGTGTCGGGATTTGAAAC
CAGGGGAGGGGGGGCCGGCGGTGGTGGCGGTAAAGATTATTAGGAACAAT
GACGTGATGCGGAAGGCGGCGCAGAGGGAATTGGACGTATTGAAGGCATT
AGCGGCCGCTGATCCGGAGAATAGGAAGCATTGCGTGCGGCTTGTAACCC
ATCTCGAGCATCGACAGCATGTAGTGATGGTATTTGAAAGTCTGCAAATG
AATTTAAGAGAGACTCTTCGAAAATTCGGAAAGCATGTTGGGTTGAATAT
AGCGGCGGTACGGACCTATGCCAAGCAGTTGTTGATTGCCCTGAGGCATA
TTGGGCATCAGGGTATCGTGCACGCGGACATCAAGCCTGACAACATATTG
GTGTCCGAGGGGTTTGGACAGTTGAAGTTGTGTGATTTTGGGAGTTCCTT
CCGGGAAGAGGCCGGGGACAATGACCCGACACCGTATTTGGTGAGTCGCT
TTTATCGCGCGCCCGAGGTTGTGTTGGGGTTTGAGTATGGCCGAGGGGTA
GATTTGTGGAGTGTCGGCTGTTGCTTGTACGAGCTGTTTACGGGACGGGT
GGCCTTCCCTGGGAGCACCAATAATGAAATGCTCAGGTTGATGATGGAGG
TGAAGGGAGGCTTGACGCAGAAGGTGGTGAGGAGGCATCGGGCCGCGTAC
GAGACGTTAAAGTTGGAGCCCATGTTCGAGCCGGACGGACGTTTCAGACA
GCAGGAGATGGACCCGGTAACTAAGATGCCTGTGTTGCGAATTGTACATG
TGCCGCCGCAGCCGACAAGAGATTTGACGGGGGTTTTGCTCAAGGCCAAG
GCGGCTTCAGATGATAAAGCGCTGGTCCTCAATTTGGGCGACTTGTTGGA
GAAGATCTTTGTGCTGGATAGCAGCAAACGAATTACAGTACGGGATGCGT
TGCACCACCCTTTTTTTATGTCATCTTCCTCGTCGTCATCATCGTCGTCG
AGTGGGCGTGCTAATGGTGGTGGTGCTAGGAATAAGTAA
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Synonyms
Publications