jgi.p|Nanoce1779_2|584361, mRNA_3049 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584361
Unique Name	mRNA_3049
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1885
Alignment location	scaffold_7:546530..548414 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584447
Track	FilteredModels2
ProteinId	584361

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:546530..548414 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584361	gene_3049	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584361	mRNA_3049-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3049	CDS_3049	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:546530..548414+
coding sequence from alignment at scaffold_7:546530..548414+

mRNA sequence

>mRNA_3049 ID=mRNA_3049|Name=jgi.p|Nanoce1779_2|584361|organism=Nannochloropsis oceanica|type=mRNA|length=1885bp
CCCCCCTGTATGCCCGGTACTCGTCTTGCCCTCCCCCCCACGTCCACCCC
CCCCTGGTACCCCTACTCCAGCCCCACCGTGACTCCCTTGTCCTACTCCT
CCACCGATAAATTGGTCTTGTTGGTTGAATGGCGCACCCGCTCCAACACC
TGCCCCGTAGTCCATCGCCCCTCCTCCATAATGCATCGACGCCGCCTGGG
AAGGCGGGGCCGAAAATTGATCCATCCCATAAACACCCTGCCCCCCTCCA
CGTGCTCCGGGGTTTCCATACCCTCCCACGGCACCTCGGCCACCGTACCC
AAATTGATTCCCACCCAGACCAGCAGCCGCAGCCTGAGCAACATATGCTT
GGTTGGGGTAAAAGTATGGAGTTTGATAGTAGCCATACCCATACGCTTGC
ATACCAGGAGGCGGCTGCCCGTAAGGGGAAGGCTGCTGCTGTTGGGTTTG
TTGCTGTTGTTGCTGCTGCTGCTGCTGTTGCTGCTGAATGGCGGGTGACA
AGTGCGGGGGTGCTCCTACGCTCGACTGCTGCTGTGACTGTTGTTGGTGG
TGGTACGACGCGGCACCAGCAGAGCCAGCGCCTGTGCTAGAAGGGGCGCC
ACTGAGAGTCGATGCGCCCATCCCGCTGGAAGCACTTACTCCAACCCCTG
GTGGCTGCTGTTGCTGCTGGCCAGGGTACCCCGTCTGGGCACTCTCTGAC
CCGGCGTCTACCCCTCCTACAGCGCCGACAACCCCGCCGGGTATTCCAAC
GCCTCCGAGGTTATATGCTCCATTTCCGTACGGAGGATATCCACTGTAGG
CCCCCATCAGCTGCTCCGCTGCCCCATGCTGCACATGCCCTCCGTGGGGG
TGCATTGCGTGTTGCGGCACGCCCGGTACTGTCTTCACAGGAGACTGGTG
CGGGGAAGGGCGAGCCTTGACTGCATCCGCGGGCTTCGATACCGAGCCAC
CAGCACTAACAGCAGCCGCGCGTTGAGCTGCCGCGTTCTCGATGGACTTG
ACTGACGTGGCACTCACCAGGGAGGGACCCCCCAACCCAGGAGGAGCAGC
GGGTCGCGCGGAGGACGAGGAAGGAGGAGCAGAACCGGGAGCCGAAGGAG
CAGTGGCACCGACAGTCGCTTCCTTGGGCGATAGAGTTCTGTCTGGCGGG
GAAGACGTGACAGACTTTGCCGCACCAGCCACAACAGGAGAGGTGCTTGC
GGCTTTGCCTCCCCAGATATCAGCTGCAGATGTTGTGGCCGTCTTCTTAT
TAGCCCCTGACTCCTCGACCCCAAAGGCGCCGAAAAGTATGTTGCCACCT
CCACCATCACCAACGGCGCTGATCGCTTCCCACTGTCCCAGCTTAACACG
ACCCAAGCTGTCGGCAGTCGCATCCACACCTCCTTCCTTAATCTCCGGCT
TGAGACCAGCAGCACATCTGTCAGCTTCAATCGGAGCCCGCCGCTGCTGT
TGCTCCTGCTGTTGCTGAGTGTCTGGCGAGGCGGCAGTGGAAGGAACCTT
GGGGCCGATGGCCTTATCGGCGTTATTTTTGTTGCTCATCTTCAGGATGT
CCGCCTCGGTGAGGGTGACCCCATCAGGAGGCCCCACAGGCCGTGACGGC
TGCTGCTGCGACGGTTGTTTTTGTTGTTGCCGTTGTTGCTGCTGTAGCTG
TCGTGGTTGTTGTTGTTGTTGTTGGTGTGGTTGTGATTGATGTTGTGGTG
GTTGTTGTGGTTGTTGTTGATGTTTTTGTTGTTGTGATTGCCGCTCTGAT
TGTTGTTGCTGTCTTTGTTGTTGTGTTTGATGTGATTGTTGTCGATCCGG
CGGGAGAGTGGTAATTGTGGCGGGGGACGCAGCGGCGGCGGACTTCGGGA
CAATTTGGGGCGCCTGCGCCTTGGGGGGGGGGGGG

protein sequence of jgi.p|Nanoce1779_2|584361

>mRNA_3049-protein ID=mRNA_3049-protein|Name=jgi.p|Nanoce1779_2|584361|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MPGTRLALPPTSTPPWYPYSSPTVTPLSYSSTDKLVLLVEWRTRSNTCPV
VHRPSSIMHRRRLGRRGRKLIHPINTLPPSTCSGVSIPSHGTSATVPKLI
PTQTSSRSLSNICLVGVKVWSLIVAIPIRLHTRRRLPVRGRLLLLGLLLL
LLLLLLLLLNGG*

mRNA from alignment at scaffold_7:546530..548414+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3049 ID=mRNA_3049|Name=jgi.p|Nanoce1779_2|584361|organism=Nannochloropsis oceanica|type=mRNA|length=1885bp|location=Sequence derived from alignment at scaffold_7:546530..548414+ (Nannochloropsis oceanica)
CCCCCCTGTATGCCCGGTACTCGTCTTGCCCTCCCCCCCACGTCCACCCC
CCCCTGGTACCCCTACTCCAGCCCCACCGTGACTCCCTTGTCCTACTCCT
CCACCGATAAATTGGTCTTGTTGGTTGAATGGCGCACCCGCTCCAACACC
TGCCCCGTAGTCCATCGCCCCTCCTCCATAATGCATCGACGCCGCCTGGG
AAGGCGGGGCCGAAAATTGATCCATCCCATAAACACCCTGCCCCCCTCCA
CGTGCTCCGGGGTTTCCATACCCTCCCACGGCACCTCGGCCACCGTACCC
AAATTGATTCCCACCCAGACCAGCAGCCGCAGCCTGAGCAACATATGCTT
GGTTGGGGTAAAAGTATGGAGTTTGATAGTAGCCATACCCATACGCTTGC
ATACCAGGAGGCGGCTGCCCGTAAGGGGAAGGCTGCTGCTGTTGGGTTTG
TTGCTGTTGTTGCTGCTGCTGCTGCTGTTGCTGCTGAATGGCGGGTGACA
AGTGCGGGGGTGCTCCTACGCTCGACTGCTGCTGTGACTGTTGTTGGTGG
TGGTACGACGCGGCACCAGCAGAGCCAGCGCCTGTGCTAGAAGGGGCGCC
ACTGAGAGTCGATGCGCCCATCCCGCTGGAAGCACTTACTCCAACCCCTG
GTGGCTGCTGTTGCTGCTGGCCAGGGTACCCCGTCTGGGCACTCTCTGAC
CCGGCGTCTACCCCTCCTACAGCGCCGACAACCCCGCCGGGTATTCCAAC
GCCTCCGAGGTTATATGCTCCATTTCCGTACGGAGGATATCCACTGTAGG
CCCCCATCAGCTGCTCCGCTGCCCCATGCTGCACATGCCCTCCGTGGGGG
TGCATTGCGTGTTGCGGCACGCCCGGTACTGTCTTCACAGGAGACTGGTG
CGGGGAAGGGCGAGCCTTGACTGCATCCGCGGGCTTCGATACCGAGCCAC
CAGCACTAACAGCAGCCGCGCGTTGAGCTGCCGCGTTCTCGATGGACTTG
ACTGACGTGGCACTCACCAGGGAGGGACCCCCCAACCCAGGAGGAGCAGC
GGGTCGCGCGGAGGACGAGGAAGGAGGAGCAGAACCGGGAGCCGAAGGAG
CAGTGGCACCGACAGTCGCTTCCTTGGGCGATAGAGTTCTGTCTGGCGGG
GAAGACGTGACAGACTTTGCCGCACCAGCCACAACAGGAGAGGTGCTTGC
GGCTTTGCCTCCCCAGATATCAGCTGCAGATGTTGTGGCCGTCTTCTTAT
TAGCCCCTGACTCCTCGACCCCAAAGGCGCCGAAAAGTATGTTGCCACCT
CCACCATCACCAACGGCGCTGATCGCTTCCCACTGTCCCAGCTTAACACG
ACCCAAGCTGTCGGCAGTCGCATCCACACCTCCTTCCTTAATCTCCGGCT
TGAGACCAGCAGCACATCTGTCAGCTTCAATCGGAGCCCGCCGCTGCTGT
TGCTCCTGCTGTTGCTGAGTGTCTGGCGAGGCGGCAGTGGAAGGAACCTT
GGGGCCGATGGCCTTATCGGCGTTATTTTTGTTGCTCATCTTCAGGATGT
CCGCCTCGGTGAGGGTGACCCCATCAGGAGGCCCCACAGGCCGTGACGGC
TGCTGCTGCGACGGTTGTTTTTGTTGTTGCCGTTGTTGCTGCTGTAGCTG
TCGTGGTTGTTGTTGTTGTTGTTGGTGTGGTTGTGATTGATGTTGTGGTG
GTTGTTGTGGTTGTTGTTGATGTTTTTGTTGTTGTGATTGCCGCTCTGAT
TGTTGTTGCTGTCTTTGTTGTTGTGTTTGATGTGATTGTTGTCGATCCGG
CGGGAGAGTGGTAATTGTGGCGGGGGACGCAGCGGCGGCGGACTTCGGGA
CAATTTGGGGCGCCTGCGCCTTGGGGGGGGGGGGG

Coding sequence (CDS) from alignment at scaffold_7:546530..548414+

>mRNA_3049 ID=mRNA_3049|Name=jgi.p|Nanoce1779_2|584361|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at scaffold_7:546530..548414+ (Nannochloropsis oceanica)
ATGCCCGGTACTCGTCTTGCCCTCCCCCCCACGTCCACCCCCCCCTGGTA
CCCCTACTCCAGCCCCACCGTGACTCCCTTGTCCTACTCCTCCACCGATA
AATTGGTCTTGTTGGTTGAATGGCGCACCCGCTCCAACACCTGCCCCGTA
GTCCATCGCCCCTCCTCCATAATGCATCGACGCCGCCTGGGAAGGCGGGG
CCGAAAATTGATCCATCCCATAAACACCCTGCCCCCCTCCACGTGCTCCG
GGGTTTCCATACCCTCCCACGGCACCTCGGCCACCGTACCCAAATTGATT
CCCACCCAGACCAGCAGCCGCAGCCTGAGCAACATATGCTTGGTTGGGGT
AAAAGTATGGAGTTTGATAGTAGCCATACCCATACGCTTGCATACCAGGA
GGCGGCTGCCCGTAAGGGGAAGGCTGCTGCTGTTGGGTTTGTTGCTGTTG
TTGCTGCTGCTGCTGCTGTTGCTGCTGAATGGCGGGTGA

Synonyms

Publications