jgi.p|Nanoce1779_2|584358, mRNA_3048 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584358
Unique Name	mRNA_3048
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1370
Alignment location	scaffold_7:543896..545265 +

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Properties


Property Name	Value
TranscriptId	584444
Track	FilteredModels2
ProteinId	584358

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:543896..545265 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584358	gene_3048	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584358	mRNA_3048-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3048	CDS_3048	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:543896..545265+
coding sequence from alignment at scaffold_7:543896..545265+

mRNA sequence

>mRNA_3048 ID=mRNA_3048|Name=jgi.p|Nanoce1779_2|584358|organism=Nannochloropsis oceanica|type=mRNA|length=1370bp
AGACCATGGAGGTACAAAAGACATACGGCCTCGATTGTTGATGTGCGCTC
GTTCTTCGGTCCACATCATTTGCTCGCTGTCGCCGGGGTGATCAACAGGT
CGACGACGACGACGACGCCGCTGACTTGTGTCGCTGCCGCTGACCATCCC
ATTTCCCTAGCTTTCACTCCCTAGCTCAACTCCTTGCCTTCCGTCCGGTC
TCACGCTCACGTTCACAGGTGATCTCGTCAACCTGCAGCACCAGAAAACT
TACTCTTCCGCTGGGACGCCCTTGTCACCTGTCCGCCTCTTCCATCACCA
TGAGTCACCTCCTACCCCTTCTCGTCCTGGCCCTGGCAGTTTTGTGCTGC
ATCACCACCGCTTTTGTCGTGCCCGTGCCATCATTAACACATTCTAACGC
TGTGCTATTTAGCTGCACATCGTTGCGGAGGACCTCGGGTGTCCTCAGCA
TGGCCAAAGGACGCAAAGCGGCGAAGAAGCGTAAGACAGTCCCTCCCCCG
TTTCCCCGCGATGACGAGCAGGACTCTAGCAGCAGCACCATCTCAACCAC
CACCAAGGCAAAGGATAAAGAGACCCAGTCATTTGGCATCTTAGGCTCGG
ATGGTAGCAGCAGTGACAAGGTAGGCGTGGGATTTGGTGCCACCAAGCCC
TCGTCGTCTGTGGGTTCCGGAAAACTCTCTGCCATGGACGTTGACGCCGC
ATTTGAGAAGACTATGAGCAAGATCAAGGGTCAAGACCGCATGTCCGCCT
CGCCTTTAGGTGGTGTGGTCGTGCCAGGTGGGCCCGGACAAGCGCCAGTG
AGGGCAGATGGCAAGGTGCCCGTGCGAAACATTGGCATCTTTGATGTGGT
GCCCCAGTCGGTACAGAGTGGCTTCGAGCTCACTCTCTTTGCCTTGTTAA
CATTGAATTTGTTAGTTATCATTGTGATTGGCACGGGGTTCGCAGTTGAA
GCGTTGCCCACATCGAATTTGGACTTGCCAGACTTTTTGGTGAAATTGTC
GAAGCTGGTTCAGCCTTTTATCCAGAAGACTGATGCCCTCTTCACTCCTG
CCTTGGGTGTTTTTTTCCTTTTGTCGTCTTTGTTGGGATCTTTTAAGATC
GCTCAGTTGTCTCAGGGTACAACAACATACGTAGAAAAGAAGGAGATTGA
CAAACAAATGAAGGGACGCAGAAAGAGATAAGAAAAAAGATGAGATTTCC
TATTCGTGCTGTGTGTTCGAAAATAGGTAGGCTCTAGGAAGAGACGTTGC
GTGTACTCCCCGGATTTCTTTCTCCATTGTAAGATATTCATCCTCAAGTG
CTTGTATTGTGTTTTTGGAGTACAGCAACTTCAAGGAAACAGCGAAAGAA
AACTTTACATCTGCTCTCGA

protein sequence of jgi.p|Nanoce1779_2|584358

>mRNA_3048-protein ID=mRNA_3048-protein|Name=jgi.p|Nanoce1779_2|584358|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MSHLLPLLVLALAVLCCITTAFVVPVPSLTHSNAVLFSCTSLRRTSGVLS
MAKGRKAAKKRKTVPPPFPRDDEQDSSSSTISTTTKAKDKETQSFGILGS
DGSSSDKVGVGFGATKPSSSVGSGKLSAMDVDAAFEKTMSKIKGQDRMSA
SPLGGVVVPGGPGQAPVRADGKVPVRNIGIFDVVPQSVQSGFELTLFALL
TLNLLVIIVIGTGFAVEALPTSNLDLPDFLVKLSKLVQPFIQKTDALFTP
ALGVFFLLSSLLGSFKIAQLSQGTTTYVEKKEIDKQMKGRRKR*

mRNA from alignment at scaffold_7:543896..545265+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3048 ID=mRNA_3048|Name=jgi.p|Nanoce1779_2|584358|organism=Nannochloropsis oceanica|type=mRNA|length=1370bp|location=Sequence derived from alignment at scaffold_7:543896..545265+ (Nannochloropsis oceanica)
AGACCATGGAGGTACAAAAGACATACGGCCTCGATTGTTGATGTGCGCTC
GTTCTTCGGTCCACATCATTTGCTCGCTGTCGCCGGGGTGATCAACAGGT
CGACGACGACGACGACGCCGCTGACTTGTGTCGCTGCCGCTGACCATCCC
ATTTCCCTAGCTTTCACTCCCTAGCTCAACTCCTTGCCTTCCGTCCGGTC
TCACGCTCACGTTCACAGGTGATCTCGTCAACCTGCAGCACCAGAAAACT
TACTCTTCCGCTGGGACGCCCTTGTCACCTGTCCGCCTCTTCCATCACCA
TGAGTCACCTCCTACCCCTTCTCGTCCTGGCCCTGGCAGTTTTGTGCTGC
ATCACCACCGCTTTTGTCGTGCCCGTGCCATCATTAACACATTCTAACGC
TGTGCTATTTAGCTGCACATCGTTGCGGAGGACCTCGGGTGTCCTCAGCA
TGGCCAAAGGACGCAAAGCGGCGAAGAAGCGTAAGACAGTCCCTCCCCCG
TTTCCCCGCGATGACGAGCAGGACTCTAGCAGCAGCACCATCTCAACCAC
CACCAAGGCAAAGGATAAAGAGACCCAGTCATTTGGCATCTTAGGCTCGG
ATGGTAGCAGCAGTGACAAGGTAGGCGTGGGATTTGGTGCCACCAAGCCC
TCGTCGTCTGTGGGTTCCGGAAAACTCTCTGCCATGGACGTTGACGCCGC
ATTTGAGAAGACTATGAGCAAGATCAAGGGTCAAGACCGCATGTCCGCCT
CGCCTTTAGGTGGTGTGGTCGTGCCAGGTGGGCCCGGACAAGCGCCAGTG
AGGGCAGATGGCAAGGTGCCCGTGCGAAACATTGGCATCTTTGATGTGGT
GCCCCAGTCGGTACAGAGTGGCTTCGAGCTCACTCTCTTTGCCTTGTTAA
CATTGAATTTGTTAGTTATCATTGTGATTGGCACGGGGTTCGCAGTTGAA
GCGTTGCCCACATCGAATTTGGACTTGCCAGACTTTTTGGTGAAATTGTC
GAAGCTGGTTCAGCCTTTTATCCAGAAGACTGATGCCCTCTTCACTCCTG
CCTTGGGTGTTTTTTTCCTTTTGTCGTCTTTGTTGGGATCTTTTAAGATC
GCTCAGTTGTCTCAGGGTACAACAACATACGTAGAAAAGAAGGAGATTGA
CAAACAAATGAAGGGACGCAGAAAGAGATAAGAAAAAAGATGAGATTTCC
TATTCGTGCTGTGTGTTCGAAAATAGGTAGGCTCTAGGAAGAGACGTTGC
GTGTACTCCCCGGATTTCTTTCTCCATTGTAAGATATTCATCCTCAAGTG
CTTGTATTGTGTTTTTGGAGTACAGCAACTTCAAGGAAACAGCGAAAGAA
AACTTTACATCTGCTCTCGA

Coding sequence (CDS) from alignment at scaffold_7:543896..545265+

>mRNA_3048 ID=mRNA_3048|Name=jgi.p|Nanoce1779_2|584358|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_7:543896..545265+ (Nannochloropsis oceanica)
ATGAGTCACCTCCTACCCCTTCTCGTCCTGGCCCTGGCAGTTTTGTGCTG
CATCACCACCGCTTTTGTCGTGCCCGTGCCATCATTAACACATTCTAACG
CTGTGCTATTTAGCTGCACATCGTTGCGGAGGACCTCGGGTGTCCTCAGC
ATGGCCAAAGGACGCAAAGCGGCGAAGAAGCGTAAGACAGTCCCTCCCCC
GTTTCCCCGCGATGACGAGCAGGACTCTAGCAGCAGCACCATCTCAACCA
CCACCAAGGCAAAGGATAAAGAGACCCAGTCATTTGGCATCTTAGGCTCG
GATGGTAGCAGCAGTGACAAGGTAGGCGTGGGATTTGGTGCCACCAAGCC
CTCGTCGTCTGTGGGTTCCGGAAAACTCTCTGCCATGGACGTTGACGCCG
CATTTGAGAAGACTATGAGCAAGATCAAGGGTCAAGACCGCATGTCCGCC
TCGCCTTTAGGTGGTGTGGTCGTGCCAGGTGGGCCCGGACAAGCGCCAGT
GAGGGCAGATGGCAAGGTGCCCGTGCGAAACATTGGCATCTTTGATGTGG
TGCCCCAGTCGGTACAGAGTGGCTTCGAGCTCACTCTCTTTGCCTTGTTA
ACATTGAATTTGTTAGTTATCATTGTGATTGGCACGGGGTTCGCAGTTGA
AGCGTTGCCCACATCGAATTTGGACTTGCCAGACTTTTTGGTGAAATTGT
CGAAGCTGGTTCAGCCTTTTATCCAGAAGACTGATGCCCTCTTCACTCCT
GCCTTGGGTGTTTTTTTCCTTTTGTCGTCTTTGTTGGGATCTTTTAAGAT
CGCTCAGTTGTCTCAGGGTACAACAACATACGTAGAAAAGAAGGAGATTG
ACAAACAAATGAAGGGACGCAGAAAGAGATAA

Synonyms

Publications