jgi.p|Nanoce1779_2|540028, mRNA_3046 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|540028
Unique NamemRNA_3046
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length592
Alignment locationscaffold_7:541204..542443 +

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Properties
Property NameValue
TranscriptId540114
TrackFilteredModels2
ProteinId540028
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:541204..542443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|540028gene_3046Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|540028mRNA_3046-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3046CDS_3046Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3046 ID=mRNA_3046|Name=jgi.p|Nanoce1779_2|540028|organism=Nannochloropsis oceanica|type=mRNA|length=592bp
CCACCACATCGACAGGAAACCCGGACAAGGGCCCCTCTAAACATGCCTGG
CGAGCATGACCATAGCTTGACACTCAGTCCAAAAGCGCTCGGCTGCTTCG
CGCAACTCGCTTTTCCTCGAACCCCCTTGCGTCCTTTCCGTGTTCGTCAT
CCAAAGTAACCCCAATCCACACACACAATACTCCCCACAGGCAAGGAGCG
GTTTCAAATAGCATCAACGACGGGAAAGGATGCAGATCCTAATCAAGACA
TTGACGGGCCGTAAGCAGTCGTTCAATTTTGAGCCAGAAGAGAAGGTCGA
AGCGGTAAAGCAGGCGTTGCAAGAGAAGGAAGGCATCCAAGTTGACCAGA
TTCGATTGATTTACGCGGGAAAGCAGCTTGCGGATGACAAGACCCTTTCT
TTTTACAATGTAGTGGCCGGTGGTACGATCCACATGGTCCTGCAGCTTCG
CGGCGGATTTAAATAGGAGAAGACGGGGAAGGAAGGAAGAAGAGGGGAAA
GGTGAGAGGGTGCGGTGAGGATGGGATGCATGTAGACGTACATATGGATG
GAGCAAGGCGGAGAAAAAACTTTTAGTGGGCAAAATTAATCT
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protein sequence of jgi.p|Nanoce1779_2|540028

>mRNA_3046-protein ID=mRNA_3046-protein|Name=jgi.p|Nanoce1779_2|540028|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MQILIKTLTGRKQSFNFEPEEKVEAVKQALQEKEGIQVDQIRLIYAGKQL
ADDKTLSFYNVVAGGTIHMVLQLRGGFK*
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mRNA from alignment at scaffold_7:541204..542443+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3046 ID=mRNA_3046|Name=jgi.p|Nanoce1779_2|540028|organism=Nannochloropsis oceanica|type=mRNA|length=1240bp|location=Sequence derived from alignment at scaffold_7:541204..542443+ (Nannochloropsis oceanica)
CCACCACATCGACAGGAAACCCGGACAAGGGCCCCTCTAAACATGCCTGG
CGAGCATGACCATAGCTTGACACTCAGTCCAAAAGCGCTCGGCTGCTTCG
CGCAACTCGCTTTTCCTCGAACCCCCTTGCGTCCTTTCCGTGTTCGTCAT
CCAAAGTAACCCCAATCCACACACACAATACTCCCCACAGGCAAGGAGCG
GTTTCAAATAGCATCAACGACGGGAAAGGATGCAGGTTCGTGTGCTTGTC
GGTGGCTTTTGCACTCTCCAATTTGTAGATTGTATGCCCCCTCTCATCAT
CATCGCTGTTCCTCCCCGGGGAGGGCTTCCACGTGCCAATAATATCAGCT
CTCACATTCGCCTCCATCTCTTCCCCACCCCGCACGTTATCACAACACTC
TACATCGGGTACTGTCCACACCGCCGCACCAGATCCTAATCAAGGCAAGT
TTCCTCCCTCCTTCTCACCCCCCCCCCCCCCCCTTACGCCGATTCCCATC
TCTCACTCCGCTCTCCTCTCCATTCATACTCCACGCAGACATTGACGGGC
CGTAAGCAGTCGTTCAATTTTGAGCCAGAAGAGAAGGTGTGTATCCGTGT
TGTGTGGGTAACGATGACCGATTCTCCTGCGCCCAAAGTCATCTCAATCG
TCTCTCGTTTCCTCCTATCCGTTTCTTCGCGTAGGTCGAAGCGGTAAAGC
AGGCGTTGCAAGAGAAGGAAGGCATCCAAGTTGACCAGATTCGATTGATT
TACGCGGGAAAGCAGCTGTACGTATGATTACCAGTAGTCGTTCGTCTGGG
TGGTATGTGTATGTGTGGTACCTCTGTTAGATATTCATGTCGATAGGGAA
ATGGGGCGGGGAAGACAATGAGTTATCTCGCACCCTCTCCCGTTTATTTT
TTACTCGCTGATATTTTATTTCCTGCTATCAATTCGAGTTTACAATGCCT
CGCCTCGCTCTCCTCAACCCTCACCGACTCTTCTGTCTCTTCCTCCTTTC
CCCCCCTCCCTTATCCTCCACAACAGTGCGGATGACAAGACCCTTTCTTT
TTACAATGTAGTGGCCGGTGGTACGATCCACATGGTCCTGCAGCTTCGCG
GCGGATTTAAATAGGAGAAGACGGGGAAGGAAGGAAGAAGAGGGGAAAGG
TGAGAGGGTGCGGTGAGGATGGGATGCATGTAGACGTACATATGGATGGA
GCAAGGCGGAGAAAAAACTTTTAGTGGGCAAAATTAATCT
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Coding sequence (CDS) from alignment at scaffold_7:541204..542443+

>mRNA_3046 ID=mRNA_3046|Name=jgi.p|Nanoce1779_2|540028|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at scaffold_7:541204..542443+ (Nannochloropsis oceanica)
ATGCAGATCCTAATCAAGACATTGACGGGCCGTAAGCAGTCGTTCAATTT
TGAGCCAGAAGAGAAGGTCGAAGCGGTAAAGCAGGCGTTGCAAGAGAAGG
AAGGCATCCAAGTTGACCAGATTCGATTGATTTACGCGGGAAAGCAGCTT
GCGGATGACAAGACCCTTTCTTTTTACAATGTAGTGGCCGGTGGTACGAT
CCACATGGTCCTGCAGCTTCGCGGCGGATTTAAATAGATGCAGATCCTAA
TCAAGACATTGACGGGCCGTAAGCAGTCGTTCAATTTTGAGCCAGAAGAG
AAGGTCGAAGCGGTAAAGCAGGCGTTGCAAGAGAAGGAAGGCATCCAAGT
TGACCAGATTCGATTGATTTACGCGGGAAAGCAGCTTGCGGATGACAAGA
CCCTTTCTTTTTACAATGTAGTGGCCGGTGGTACGATCCACATGGTCCTG
CAGCTTCGCGGCGGATTTAAATAGATGCAGATCCTAATCAAGACATTGAC
GGGCCGTAAGCAGTCGTTCAATTTTGAGCCAGAAGAGAAGGTCGAAGCGG
TAAAGCAGGCGTTGCAAGAGAAGGAAGGCATCCAAGTTGACCAGATTCGA
TTGATTTACGCGGGAAAGCAGCTTGCGGATGACAAGACCCTTTCTTTTTA
CAATGTAGTGGCCGGTGGTACGATCCACATGGTCCTGCAGCTTCGCGGCG
GATTTAAATAGATGCAGATCCTAATCAAGACATTGACGGGCCGTAAGCAG
TCGTTCAATTTTGAGCCAGAAGAGAAGGTCGAAGCGGTAAAGCAGGCGTT
GCAAGAGAAGGAAGGCATCCAAGTTGACCAGATTCGATTGATTTACGCGG
GAAAGCAGCTTGCGGATGACAAGACCCTTTCTTTTTACAATGTAGTGGCC
GGTGGTACGATCCACATGGTCCTGCAGCTTCGCGGCGGATTTAAATAGAT
GCAGATCCTAATCAAGACATTGACGGGCCGTAAGCAGTCGTTCAATTTTG
AGCCAGAAGAGAAGGTCGAAGCGGTAAAGCAGGCGTTGCAAGAGAAGGAA
GGCATCCAAGTTGACCAGATTCGATTGATTTACGCGGGAAAGCAGCTTGC
GGATGACAAGACCCTTTCTTTTTACAATGTAGTGGCCGGTGGTACGATCC
ACATGGTCCTGCAGCTTCGCGGCGGATTTAAATAG
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Synonyms
Publications