jgi.p|Nanoce1779_2|584339, mRNA_3043 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584339
Unique NamemRNA_3043
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1866
Alignment locationscaffold_7:533465..535330 -

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Properties
Property NameValue
TranscriptId584425
TrackFilteredModels2
ProteinId584339
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:533465..535330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584339gene_3043Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584339mRNA_3043-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3043CDS_3043Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3043 ID=mRNA_3043|Name=jgi.p|Nanoce1779_2|584339|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp
AAAATGATAGGCGCGGCAGAATGCCGTCGACCAAGAAGCGCTTGACGGAG
GGGATCTTGACTCGCGCGCCGCCCTACCCCACTGCCGCTCCTTCAACTTC
ACATGCGTTCGCCGCCGCGCCCTCGATACCCTCTTTGGTCAAAGGCCCAA
TACCGATCGAGCGGCCTGTTGCGGTGACCATGCTAGCGTTGGGTCAGGAT
GTATTGAATCTGGTAGCTCAATTGTTGCATCCTATGGACCTGGCTCGCCT
CGCCATGTGCACACGTGATCTACTCCTCGGGAGCGAGCTGAGCGCCGCTC
TCCTGTGCCGCAGCTTTTTGAAGCCCCCAGAGACCGGGGAGGAGACGACG
AGTGGTTTTGGCGCTCATCGCAGCGTCAGTAGCTGGCGGTTTCGCTACCT
GTGTGCCTTCGAAGTCGCGGGCGTGGGGGATGATCGGCTCAAGATGGTGC
TGCGACAAATGTATGCAGGAGCAGGAGCAGCAGGCGGCATTGAAGGAGCA
TCAACGGCAACGGCCACTCACTTTCCTGCACCTTTGCAGCATCTCAACCT
GTACGGTTTGAATATTGGCGACGCTGGCGCAGAACGCCTCGCGCTGGCCC
TGCGGGTGGCGCGGGCTTATCGGGTGTTGCTCCTCAACCTGGGGGGCAAC
AATTTGAGCGACCGAGGGGCTCAAGCGGTGGTGCAGGCCCTGAAGCGACA
CCACCATGAGGTGGATACTCTCTTTCTGGCTCAGAACAAGATTGGTCCAA
ATGGTGCGCGGTGCGTGGCTGATTTAATCTCCTCAAGTCCCAAGCTTCGT
TCGCTTTCCTTGTCCGATAACCCGTTGATGGACGAGGGTGCTGTGTGCAT
CACAGGGGCCTTGCCGGAAAGTAGAAGCTTGGCAACCTTGTCGATGCGAT
GTACAAGTTTTTCGTCTCAGGCCCGGGAGGGGATCCGGTCGTCGTGGGGA
GGACGGGGTGGAGACAAGGTTTTTGGGCTTTACATTTAAAAAATAAGAGG
AGGCGGAGTGATGAGACCATTGGGGGAAGGAGAAAATAACTTGGGGTTAA
AGGAGAAGGAATTGAACATGGCGTGAAGAGATGGTATTGTCAATGGAGGA
ATATAAAGTATTAAGGTGGGGCGAGTTGACAGGAGAATGACGAACACAAC
ATGCAAACTTTACTTGTTGTGGAGCGAAAGCACCGATGTGTACAAACTTG
AGTGGAGGAAGAGATTAGAAATTTTGTGGAGGGAGAAAATGAAAGAGGAA
GAGAGAGACGAAGGCAGGCGGATGCGTAACCTAAGGACGAGCATATCCTT
GGCATCTGTTGATGCTGCACGTATGCAATAGAGGACGACATTGATTTATG
TATCTTTGGTTTATTTTTGGTGAAACCACACTCGGTAGATCGCCCTTTTT
CAAAAGTCTTAGTAAATGTTCACAATATCCATTGAACAATCAGCCGAAGT
GTTAAGACAACTCAGCCTCAACACGAAGCAAGAGCCACTGATGCTTGCTG
GTAGTAGGAGAACTGCAAATATATATATTTACATGAAAAGAGGAATAGCG
CCAAACAAAGAGAGAATGAATATCATAAGCGCACACACCAAAGAGGATAC
GAGCGGCCCTGAAGTTAGAGCGGAGAAAGATGAAGGACGGACGTGGGGGG
GCTCATGCATGCTCCAACCATATCCAACGTACAAAGAATGAGCAGACGTG
AAAGACGATGAAAGAAGAGATGTCAGAGACAAAGCAAATAAGTATCAAAC
TGACTATCTGAGTAAAATGCGGATGACAGAGATTTTGAACAGAAAAGAAA
AAGAATTAGAGAAAAAGACAGAGGTGGTGAAAGGAGAGGACGCTTTTGAT
TCACCTCCGTCGTTCC
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protein sequence of jgi.p|Nanoce1779_2|584339

>mRNA_3043-protein ID=mRNA_3043-protein|Name=jgi.p|Nanoce1779_2|584339|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MPSTKKRLTEGILTRAPPYPTAAPSTSHAFAAAPSIPSLVKGPIPIERPV
AVTMLALGQDVLNLVAQLLHPMDLARLAMCTRDLLLGSELSAALLCRSFL
KPPETGEETTSGFGAHRSVSSWRFRYLCAFEVAGVGDDRLKMVLRQMYAG
AGAAGGIEGASTATATHFPAPLQHLNLYGLNIGDAGAERLALALRVARAY
RVLLLNLGGNNLSDRGAQAVVQALKRHHHEVDTLFLAQNKIGPNGARCVA
DLISSSPKLRSLSLSDNPLMDEGAVCITGALPESRSLATLSMRCTSFSSQ
AREGIRSSWGGRGGDKVFGLYI*
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mRNA from alignment at scaffold_7:533465..535330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3043 ID=mRNA_3043|Name=jgi.p|Nanoce1779_2|584339|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp|location=Sequence derived from alignment at scaffold_7:533465..535330- (Nannochloropsis oceanica)
AAAATGATAGGCGCGGCAGAATGCCGTCGACCAAGAAGCGCTTGACGGAG
GGGATCTTGACTCGCGCGCCGCCCTACCCCACTGCCGCTCCTTCAACTTC
ACATGCGTTCGCCGCCGCGCCCTCGATACCCTCTTTGGTCAAAGGCCCAA
TACCGATCGAGCGGCCTGTTGCGGTGACCATGCTAGCGTTGGGTCAGGAT
GTATTGAATCTGGTAGCTCAATTGTTGCATCCTATGGACCTGGCTCGCCT
CGCCATGTGCACACGTGATCTACTCCTCGGGAGCGAGCTGAGCGCCGCTC
TCCTGTGCCGCAGCTTTTTGAAGCCCCCAGAGACCGGGGAGGAGACGACG
AGTGGTTTTGGCGCTCATCGCAGCGTCAGTAGCTGGCGGTTTCGCTACCT
GTGTGCCTTCGAAGTCGCGGGCGTGGGGGATGATCGGCTCAAGATGGTGC
TGCGACAAATGTATGCAGGAGCAGGAGCAGCAGGCGGCATTGAAGGAGCA
TCAACGGCAACGGCCACTCACTTTCCTGCACCTTTGCAGCATCTCAACCT
GTACGGTTTGAATATTGGCGACGCTGGCGCAGAACGCCTCGCGCTGGCCC
TGCGGGTGGCGCGGGCTTATCGGGTGTTGCTCCTCAACCTGGGGGGCAAC
AATTTGAGCGACCGAGGGGCTCAAGCGGTGGTGCAGGCCCTGAAGCGACA
CCACCATGAGGTGGATACTCTCTTTCTGGCTCAGAACAAGATTGGTCCAA
ATGGTGCGCGGTGCGTGGCTGATTTAATCTCCTCAAGTCCCAAGCTTCGT
TCGCTTTCCTTGTCCGATAACCCGTTGATGGACGAGGGTGCTGTGTGCAT
CACAGGGGCCTTGCCGGAAAGTAGAAGCTTGGCAACCTTGTCGATGCGAT
GTACAAGTTTTTCGTCTCAGGCCCGGGAGGGGATCCGGTCGTCGTGGGGA
GGACGGGGTGGAGACAAGGTTTTTGGGCTTTACATTTAAAAAATAAGAGG
AGGCGGAGTGATGAGACCATTGGGGGAAGGAGAAAATAACTTGGGGTTAA
AGGAGAAGGAATTGAACATGGCGTGAAGAGATGGTATTGTCAATGGAGGA
ATATAAAGTATTAAGGTGGGGCGAGTTGACAGGAGAATGACGAACACAAC
ATGCAAACTTTACTTGTTGTGGAGCGAAAGCACCGATGTGTACAAACTTG
AGTGGAGGAAGAGATTAGAAATTTTGTGGAGGGAGAAAATGAAAGAGGAA
GAGAGAGACGAAGGCAGGCGGATGCGTAACCTAAGGACGAGCATATCCTT
GGCATCTGTTGATGCTGCACGTATGCAATAGAGGACGACATTGATTTATG
TATCTTTGGTTTATTTTTGGTGAAACCACACTCGGTAGATCGCCCTTTTT
CAAAAGTCTTAGTAAATGTTCACAATATCCATTGAACAATCAGCCGAAGT
GTTAAGACAACTCAGCCTCAACACGAAGCAAGAGCCACTGATGCTTGCTG
GTAGTAGGAGAACTGCAAATATATATATTTACATGAAAAGAGGAATAGCG
CCAAACAAAGAGAGAATGAATATCATAAGCGCACACACCAAAGAGGATAC
GAGCGGCCCTGAAGTTAGAGCGGAGAAAGATGAAGGACGGACGTGGGGGG
GCTCATGCATGCTCCAACCATATCCAACGTACAAAGAATGAGCAGACGTG
AAAGACGATGAAAGAAGAGATGTCAGAGACAAAGCAAATAAGTATCAAAC
TGACTATCTGAGTAAAATGCGGATGACAGAGATTTTGAACAGAAAAGAAA
AAGAATTAGAGAAAAAGACAGAGGTGGTGAAAGGAGAGGACGCTTTTGAT
TCACCTCCGTCGTTCC
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Coding sequence (CDS) from alignment at scaffold_7:533465..535330-

>mRNA_3043 ID=mRNA_3043|Name=jgi.p|Nanoce1779_2|584339|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at scaffold_7:533465..535330- (Nannochloropsis oceanica)
ATGCCGTCGACCAAGAAGCGCTTGACGGAGGGGATCTTGACTCGCGCGCC
GCCCTACCCCACTGCCGCTCCTTCAACTTCACATGCGTTCGCCGCCGCGC
CCTCGATACCCTCTTTGGTCAAAGGCCCAATACCGATCGAGCGGCCTGTT
GCGGTGACCATGCTAGCGTTGGGTCAGGATGTATTGAATCTGGTAGCTCA
ATTGTTGCATCCTATGGACCTGGCTCGCCTCGCCATGTGCACACGTGATC
TACTCCTCGGGAGCGAGCTGAGCGCCGCTCTCCTGTGCCGCAGCTTTTTG
AAGCCCCCAGAGACCGGGGAGGAGACGACGAGTGGTTTTGGCGCTCATCG
CAGCGTCAGTAGCTGGCGGTTTCGCTACCTGTGTGCCTTCGAAGTCGCGG
GCGTGGGGGATGATCGGCTCAAGATGGTGCTGCGACAAATGTATGCAGGA
GCAGGAGCAGCAGGCGGCATTGAAGGAGCATCAACGGCAACGGCCACTCA
CTTTCCTGCACCTTTGCAGCATCTCAACCTGTACGGTTTGAATATTGGCG
ACGCTGGCGCAGAACGCCTCGCGCTGGCCCTGCGGGTGGCGCGGGCTTAT
CGGGTGTTGCTCCTCAACCTGGGGGGCAACAATTTGAGCGACCGAGGGGC
TCAAGCGGTGGTGCAGGCCCTGAAGCGACACCACCATGAGGTGGATACTC
TCTTTCTGGCTCAGAACAAGATTGGTCCAAATGGTGCGCGGTGCGTGGCT
GATTTAATCTCCTCAAGTCCCAAGCTTCGTTCGCTTTCCTTGTCCGATAA
CCCGTTGATGGACGAGGGTGCTGTGTGCATCACAGGGGCCTTGCCGGAAA
GTAGAAGCTTGGCAACCTTGTCGATGCGATGTACAAGTTTTTCGTCTCAG
GCCCGGGAGGGGATCCGGTCGTCGTGGGGAGGACGGGGTGGAGACAAGGT
TTTTGGGCTTTACATTTAA
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Synonyms
Publications