jgi.p|Nanoce1779_2|638193, mRNA_3042 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|638193
Unique Name	mRNA_3042
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2049
Alignment location	scaffold_7:531171..533219 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	638279
Track	FilteredModels2
ProteinId	638193

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:531171..533219 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638193	gene_3042	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638193	mRNA_3042-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3042	CDS_3042	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:531171..533219+
coding sequence from alignment at scaffold_7:531171..533219+

mRNA sequence

>mRNA_3042 ID=mRNA_3042|Name=jgi.p|Nanoce1779_2|638193|organism=Nannochloropsis oceanica|type=mRNA|length=2049bp
ATGGCAATGACGCCGGACCCATTGCCTTTGCGTGTACGTTGGGCAGGAGG
TGGCCCGCCGCTTCTGCTTCCAGACCTGACCACGGCCTCCACCGTTACTG
AGCTCGAATGCGCCATCCGCTTCGGCCTAAACTTGCCCGAGTCTAATGTT
ATTGTCATGCTGGCCGGCTTTCCCCCGCGCCCGCTTGCTTTACACGGGAA
AGATCGAAGCAGCATTTCCTTGGGAGGGTTGCTGCGTCCTAACGAGGTCG
TGACGGTACGGGAACACACGGAAGGGGAGGCTACAGTGCTGCAAGGCAAA
GGTACTATGAATCAGAAGAAAAGGACTGCTCGTGTCACGTCCTCGTCTTT
ATCTTCGACTGCCCGAGGAAAACGTGGGAAGACAAAGGAAGCTGGGACGC
CTGATGCAATTTCGGTCAATGCGGGTCCCAACATACGTACACTCCATGGT
GTTAGTGGCCGTGGTGGTGGTGGTGGTGGAGGTGGAGAAAGCGCACCTCA
TAAGCGACAGCCTATACATATGGGCGTGTCGAGCGAAGAGGACATTGGAG
GTTTGTTGCTTTCTTCTGTAGGAGGAGGGACAAAGGGAGGGAGGGTTGGG
CAGTGCATGCGCGCTGTGTTCCGAAAGGCCATGGACAAGCAGTTCGACGA
AGTCAAAGCAAATGCCCGGGTGGCTGCGGCAGAAGGAGGGCGATATGTCC
TGGAAGAGAACATTAAAGGGCGGCGGGGGGATGGATCATGTGCGCGGTTG
AAGGTGACTTACCACAAGGGGCTCGGGTTTCAGAGTAATTTCGAGGATGA
TGTGGAGCTGCTGACTAAGACGCAGTTGCGGGGGGTGATAGTGTCAGTGC
TGGCGGACCATGACGCAAGGGAGATGCTGAAGCCGGGGGGAATGGCGGGT
TGTAGTCCCAGGGTTTTCTGGTCATTGCTGTTCCACTGTGGTCCTAAAGC
TGGTGCTGGCGGTGCTGGTGGGGTCGAGGCAGCGTTGCGTCGGTTACTTC
CCGGGCAAGATTGGGGGTTTCTGCATGTGCGATACTCGAGAAAGTTGAGT
GAGAAGGCAATGGAGAACCAAGCCCAGGCAGAAGAGTTAAGACGGGAGAG
AGAGGAGGTGGCGCGACAGAAGAAGGAGCGAAGGGAGGCGACGATATCGA
GGAAGAAAACACGAGAAGCATCTGGGGCAGCGGCGATGGCGGCAGCGGCA
GCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACATCAACAGCAGCGGTGGAAGGAGATGATTTTG
AGGAACGGGAGGAGAATAAGAAGGAGAAGAGGGGTTTGACTTCAGCACAA
GCGGCGACGGGGGACGGGAAGAAGGAAGCGGAGGAGGTCGCGCTTGTTGT
ACCGGATGACCGGGAACTGCGAGCACAAGCGGCATTGGCTCGGTTTTGTA
AAGAGGGAAGAGGGGGAGGAGAAAAGGGGGGAAGAGAAGATGCAGCAAGA
GCAGAACCAGCAGGTGCCTCCATCAAGGACGATGACGAGGACGAGGACGA
GTTAGACTGCGATTTCCCCGAAGAGGTATCTGATGCCTGGGTTAGAGTGC
TGCGAAGCGATTCCTTCAAACTACTTACCTGTGCAGCTTTAGCAGAAGCA
GACGCCGAAGAATTGGCCCCAAGACTGGAGGAGCACTTGGCGCGTAAAAC
CAAGCCAGCGGCACCGAGTAAGCCGACAGTTGAGGAAGTCCAAAAGTGGG
TGACAGCGTGCCAGAGCGAAGAGATGGACAGCATGATGATGTCTCTGGCG
AATGGGGACGAGGATTTGCTCGAAGCCTTGGAGCGTGTGCACGTGGCGAC
GCCGAAGGATTTGAGGTTGTGGGCCGGGAGTGTCCCCGGGGCGCTGCTCG
ACATGCTGGAGCAGGAATTGACAGACGATAGGTTGAAGGCGAAGGCGAGG
GAATGTTTGCCGGACCTGGAGACCGTGAGGGAAATGGGCCGGAAGGCGGG
GAAAATGATGCTGGAGCATGCGTGGTTGGACTTGTGGGGTAGTGAGTAG

protein sequence of jgi.p|Nanoce1779_2|638193

>mRNA_3042-protein ID=mRNA_3042-protein|Name=jgi.p|Nanoce1779_2|638193|organism=Nannochloropsis oceanica|type=polypeptide|length=683bp
MAMTPDPLPLRVRWAGGGPPLLLPDLTTASTVTELECAIRFGLNLPESNV
IVMLAGFPPRPLALHGKDRSSISLGGLLRPNEVVTVREHTEGEATVLQGK
GTMNQKKRTARVTSSSLSSTARGKRGKTKEAGTPDAISVNAGPNIRTLHG
VSGRGGGGGGGGESAPHKRQPIHMGVSSEEDIGGLLLSSVGGGTKGGRVG
QCMRAVFRKAMDKQFDEVKANARVAAAEGGRYVLEENIKGRRGDGSCARL
KVTYHKGLGFQSNFEDDVELLTKTQLRGVIVSVLADHDAREMLKPGGMAG
CSPRVFWSLLFHCGPKAGAGGAGGVEAALRRLLPGQDWGFLHVRYSRKLS
EKAMENQAQAEELRREREEVARQKKERREATISRKKTREASGAAAMAAAA
AAAAAAAATTTTTTTTTTTTTTTSTAAVEGDDFEEREENKKEKRGLTSAQ
AATGDGKKEAEEVALVVPDDRELRAQAALARFCKEGRGGGEKGGREDAAR
AEPAGASIKDDDEDEDELDCDFPEEVSDAWVRVLRSDSFKLLTCAALAEA
DAEELAPRLEEHLARKTKPAAPSKPTVEEVQKWVTACQSEEMDSMMMSLA
NGDEDLLEALERVHVATPKDLRLWAGSVPGALLDMLEQELTDDRLKAKAR
ECLPDLETVREMGRKAGKMMLEHAWLDLWGSE*

mRNA from alignment at scaffold_7:531171..533219+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3042 ID=mRNA_3042|Name=jgi.p|Nanoce1779_2|638193|organism=Nannochloropsis oceanica|type=mRNA|length=2049bp|location=Sequence derived from alignment at scaffold_7:531171..533219+ (Nannochloropsis oceanica)
ATGGCAATGACGCCGGACCCATTGCCTTTGCGTGTACGTTGGGCAGGAGG
TGGCCCGCCGCTTCTGCTTCCAGACCTGACCACGGCCTCCACCGTTACTG
AGCTCGAATGCGCCATCCGCTTCGGCCTAAACTTGCCCGAGTCTAATGTT
ATTGTCATGCTGGCCGGCTTTCCCCCGCGCCCGCTTGCTTTACACGGGAA
AGATCGAAGCAGCATTTCCTTGGGAGGGTTGCTGCGTCCTAACGAGGTCG
TGACGGTACGGGAACACACGGAAGGGGAGGCTACAGTGCTGCAAGGCAAA
GGTACTATGAATCAGAAGAAAAGGACTGCTCGTGTCACGTCCTCGTCTTT
ATCTTCGACTGCCCGAGGAAAACGTGGGAAGACAAAGGAAGCTGGGACGC
CTGATGCAATTTCGGTCAATGCGGGTCCCAACATACGTACACTCCATGGT
GTTAGTGGCCGTGGTGGTGGTGGTGGTGGAGGTGGAGAAAGCGCACCTCA
TAAGCGACAGCCTATACATATGGGCGTGTCGAGCGAAGAGGACATTGGAG
GTTTGTTGCTTTCTTCTGTAGGAGGAGGGACAAAGGGAGGGAGGGTTGGG
CAGTGCATGCGCGCTGTGTTCCGAAAGGCCATGGACAAGCAGTTCGACGA
AGTCAAAGCAAATGCCCGGGTGGCTGCGGCAGAAGGAGGGCGATATGTCC
TGGAAGAGAACATTAAAGGGCGGCGGGGGGATGGATCATGTGCGCGGTTG
AAGGTGACTTACCACAAGGGGCTCGGGTTTCAGAGTAATTTCGAGGATGA
TGTGGAGCTGCTGACTAAGACGCAGTTGCGGGGGGTGATAGTGTCAGTGC
TGGCGGACCATGACGCAAGGGAGATGCTGAAGCCGGGGGGAATGGCGGGT
TGTAGTCCCAGGGTTTTCTGGTCATTGCTGTTCCACTGTGGTCCTAAAGC
TGGTGCTGGCGGTGCTGGTGGGGTCGAGGCAGCGTTGCGTCGGTTACTTC
CCGGGCAAGATTGGGGGTTTCTGCATGTGCGATACTCGAGAAAGTTGAGT
GAGAAGGCAATGGAGAACCAAGCCCAGGCAGAAGAGTTAAGACGGGAGAG
AGAGGAGGTGGCGCGACAGAAGAAGGAGCGAAGGGAGGCGACGATATCGA
GGAAGAAAACACGAGAAGCATCTGGGGCAGCGGCGATGGCGGCAGCGGCA
GCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACATCAACAGCAGCGGTGGAAGGAGATGATTTTG
AGGAACGGGAGGAGAATAAGAAGGAGAAGAGGGGTTTGACTTCAGCACAA
GCGGCGACGGGGGACGGGAAGAAGGAAGCGGAGGAGGTCGCGCTTGTTGT
ACCGGATGACCGGGAACTGCGAGCACAAGCGGCATTGGCTCGGTTTTGTA
AAGAGGGAAGAGGGGGAGGAGAAAAGGGGGGAAGAGAAGATGCAGCAAGA
GCAGAACCAGCAGGTGCCTCCATCAAGGACGATGACGAGGACGAGGACGA
GTTAGACTGCGATTTCCCCGAAGAGGTATCTGATGCCTGGGTTAGAGTGC
TGCGAAGCGATTCCTTCAAACTACTTACCTGTGCAGCTTTAGCAGAAGCA
GACGCCGAAGAATTGGCCCCAAGACTGGAGGAGCACTTGGCGCGTAAAAC
CAAGCCAGCGGCACCGAGTAAGCCGACAGTTGAGGAAGTCCAAAAGTGGG
TGACAGCGTGCCAGAGCGAAGAGATGGACAGCATGATGATGTCTCTGGCG
AATGGGGACGAGGATTTGCTCGAAGCCTTGGAGCGTGTGCACGTGGCGAC
GCCGAAGGATTTGAGGTTGTGGGCCGGGAGTGTCCCCGGGGCGCTGCTCG
ACATGCTGGAGCAGGAATTGACAGACGATAGGTTGAAGGCGAAGGCGAGG
GAATGTTTGCCGGACCTGGAGACCGTGAGGGAAATGGGCCGGAAGGCGGG
GAAAATGATGCTGGAGCATGCGTGGTTGGACTTGTGGGGTAGTGAGTAG

Coding sequence (CDS) from alignment at scaffold_7:531171..533219+

>mRNA_3042 ID=mRNA_3042|Name=jgi.p|Nanoce1779_2|638193|organism=Nannochloropsis oceanica|type=CDS|length=2049bp|location=Sequence derived from alignment at scaffold_7:531171..533219+ (Nannochloropsis oceanica)
ATGGCAATGACGCCGGACCCATTGCCTTTGCGTGTACGTTGGGCAGGAGG
TGGCCCGCCGCTTCTGCTTCCAGACCTGACCACGGCCTCCACCGTTACTG
AGCTCGAATGCGCCATCCGCTTCGGCCTAAACTTGCCCGAGTCTAATGTT
ATTGTCATGCTGGCCGGCTTTCCCCCGCGCCCGCTTGCTTTACACGGGAA
AGATCGAAGCAGCATTTCCTTGGGAGGGTTGCTGCGTCCTAACGAGGTCG
TGACGGTACGGGAACACACGGAAGGGGAGGCTACAGTGCTGCAAGGCAAA
GGTACTATGAATCAGAAGAAAAGGACTGCTCGTGTCACGTCCTCGTCTTT
ATCTTCGACTGCCCGAGGAAAACGTGGGAAGACAAAGGAAGCTGGGACGC
CTGATGCAATTTCGGTCAATGCGGGTCCCAACATACGTACACTCCATGGT
GTTAGTGGCCGTGGTGGTGGTGGTGGTGGAGGTGGAGAAAGCGCACCTCA
TAAGCGACAGCCTATACATATGGGCGTGTCGAGCGAAGAGGACATTGGAG
GTTTGTTGCTTTCTTCTGTAGGAGGAGGGACAAAGGGAGGGAGGGTTGGG
CAGTGCATGCGCGCTGTGTTCCGAAAGGCCATGGACAAGCAGTTCGACGA
AGTCAAAGCAAATGCCCGGGTGGCTGCGGCAGAAGGAGGGCGATATGTCC
TGGAAGAGAACATTAAAGGGCGGCGGGGGGATGGATCATGTGCGCGGTTG
AAGGTGACTTACCACAAGGGGCTCGGGTTTCAGAGTAATTTCGAGGATGA
TGTGGAGCTGCTGACTAAGACGCAGTTGCGGGGGGTGATAGTGTCAGTGC
TGGCGGACCATGACGCAAGGGAGATGCTGAAGCCGGGGGGAATGGCGGGT
TGTAGTCCCAGGGTTTTCTGGTCATTGCTGTTCCACTGTGGTCCTAAAGC
TGGTGCTGGCGGTGCTGGTGGGGTCGAGGCAGCGTTGCGTCGGTTACTTC
CCGGGCAAGATTGGGGGTTTCTGCATGTGCGATACTCGAGAAAGTTGAGT
GAGAAGGCAATGGAGAACCAAGCCCAGGCAGAAGAGTTAAGACGGGAGAG
AGAGGAGGTGGCGCGACAGAAGAAGGAGCGAAGGGAGGCGACGATATCGA
GGAAGAAAACACGAGAAGCATCTGGGGCAGCGGCGATGGCGGCAGCGGCA
GCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACATCAACAGCAGCGGTGGAAGGAGATGATTTTG
AGGAACGGGAGGAGAATAAGAAGGAGAAGAGGGGTTTGACTTCAGCACAA
GCGGCGACGGGGGACGGGAAGAAGGAAGCGGAGGAGGTCGCGCTTGTTGT
ACCGGATGACCGGGAACTGCGAGCACAAGCGGCATTGGCTCGGTTTTGTA
AAGAGGGAAGAGGGGGAGGAGAAAAGGGGGGAAGAGAAGATGCAGCAAGA
GCAGAACCAGCAGGTGCCTCCATCAAGGACGATGACGAGGACGAGGACGA
GTTAGACTGCGATTTCCCCGAAGAGGTATCTGATGCCTGGGTTAGAGTGC
TGCGAAGCGATTCCTTCAAACTACTTACCTGTGCAGCTTTAGCAGAAGCA
GACGCCGAAGAATTGGCCCCAAGACTGGAGGAGCACTTGGCGCGTAAAAC
CAAGCCAGCGGCACCGAGTAAGCCGACAGTTGAGGAAGTCCAAAAGTGGG
TGACAGCGTGCCAGAGCGAAGAGATGGACAGCATGATGATGTCTCTGGCG
AATGGGGACGAGGATTTGCTCGAAGCCTTGGAGCGTGTGCACGTGGCGAC
GCCGAAGGATTTGAGGTTGTGGGCCGGGAGTGTCCCCGGGGCGCTGCTCG
ACATGCTGGAGCAGGAATTGACAGACGATAGGTTGAAGGCGAAGGCGAGG
GAATGTTTGCCGGACCTGGAGACCGTGAGGGAAATGGGCCGGAAGGCGGG
GAAAATGATGCTGGAGCATGCGTGGTTGGACTTGTGGGGTAGTGAGTAG

Synonyms

Publications