jgi.p|Nanoce1779_2|584326, mRNA_3040 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584326
Unique Name	mRNA_3040
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1738
Alignment location	scaffold_7:527224..528961 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584412
Track	FilteredModels2
ProteinId	584326

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:527224..528961 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584326	gene_3040	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584326	mRNA_3040-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3040	CDS_3040	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:527224..528961+
coding sequence from alignment at scaffold_7:527224..528961+

mRNA sequence

>mRNA_3040 ID=mRNA_3040|Name=jgi.p|Nanoce1779_2|584326|organism=Nannochloropsis oceanica|type=mRNA|length=1738bp
AGCATACATTTTACAGCACCTATGGATTCCAAGTCTCCGATAAATCGACA
TCGACCAAGACAATGCCGACAGCAAAGGTACCGCTTGATAATTTCCAGGT
GAGTCGTGGCTTTCGCCTGGCGTCCTACCCTGTGCTTCCTGGCTCGCAAG
CCTTGGGACAATAGCGTGAATATATGATTTCGTCCGCAGACTCCAGAGGA
CGCGGTCCCCAACATGTCTACAAGGAGGTTGAATTCACAATACTGCCGCG
CTCGATATCTTATCTTGACAAATCTTGGATCGTGGCGACCATTTTCTCTT
TTTGACTGGCGTTCTGGTGCTTTCTTTGATATCCCCTATCTTGATCTCAC
CGATGTTTTACAATCTTGTCCCCCCGACTTTCTCCCAACTCCTCCACAGC
ATGCTCAGCCTTTTCAGCGCTATCTCTCAGGCTTTCATCCTACCTCCACC
ATGTCATTCTTCTTTCGCCACCCCCTCCACCGACTATCACCAAAGCCGAC
GATCCAATCTACAACCTCTACCCAATACTGCCGCTGCCGAAGCTACGGTT
GTCGAAGGGGGCGCCGCGAATCAAGAGTCAGATCGACAGTTCACAGTCAA
AATAAAAAGGCGTTTGAAAGAGCAACAACATTATCGGGTCACCTTTGTGA
AAGAGATCAAGGAGCTCGGGGAACTTACAGATGCCTTAATTGAGCAAGGC
GCGCTGGAAGTGTCCTATTTTACGGCAGAGCCGCTCTCCTTCAGTCTCAC
ACTGCCCGTCGAGGGAACAATTGAAGTAGAAGCAATCATGCATCTGGCTT
GGACCATGATTGAGCGCCAACAAGCGCATGAACGAAGCGGCGGCAGCAGC
AGCACTCTACTCGGGTGGAAATACGAAAAAGAAATTGTTCTTAATGCCAT
GAATTGGTTCAAAGCTGCTGCAGAGCCTGGATTCAGCCCCGTCAGTGTTG
GTCGTTTCCAAGTCGTGCCCGTCCAAAGCTACCACGATCCTCCACCACTT
TCCGCTAAGCCCGAAGAGCAGCAGCAGCAGTTGTGCATTCTGCCAGGCGA
GGGTTGGGGGGACGGCTCCCATCCATCTACACATTTGTGCCTTGATTTTT
TGAGTCAGGAGGGTGTGATTTGTGGAGGGGAGAGGGTTATAGACTATGGC
ACCGGGAGCGGCATTTTATCAATTGCTGCTGTGCAGATCGGGGCGAGGGA
AGCGGTGGGAATTGATGTGTGTTACGATGCTTTGGCCTCTGCCAAAGCAA
ACGTGCTGCTTAATGGTGTGGATCAAGAAGTAGAGCTGATTCATCCTCGG
GAGGTGGTACCCGGAGAGTTTATTCCTGGCGATGTGGTAATTGCGAATAT
TTTAGTGGGGACATTGCTGGCGATGAGAAACACGATTATGGGGGCGGTAA
AGCCTGGGGGATGGTTGGTCTTGTCGGGTTTGAGGCCTGAGCAGGTGGAG
GTAATCAAGAAGAAGTATGGAAAGAATGTGCAGTGGGAGGAGGGGCTAGA
GAAGGTGGAGGAGGTGAGGAACCCGACGTTTGGGACGGGGGCGGGCCTCT
GGGTTAGACTGGTGGGACGGAGGGTCCATGCCGAACGCTGGGTCGATATG
TTAAGTGAAGCAGCGGTGTCGTAACTAAATGGAGGATGAAATAATGATAA
AAGATGATGAGATGAGAGTAGACGCAACATAAAAAGAGATCGAGTAGGAA
AATTGTTTGTGTGATTCTCTTTATCAGTCGTGTACTAC

protein sequence of jgi.p|Nanoce1779_2|584326

>mRNA_3040-protein ID=mRNA_3040-protein|Name=jgi.p|Nanoce1779_2|584326|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MFYNLVPPTFSQLLHSMLSLFSAISQAFILPPPCHSSFATPSTDYHQSRR
SNLQPLPNTAAAEATVVEGGAANQESDRQFTVKIKRRLKEQQHYRVTFVK
EIKELGELTDALIEQGALEVSYFTAEPLSFSLTLPVEGTIEVEAIMHLAW
TMIERQQAHERSGGSSSTLLGWKYEKEIVLNAMNWFKAAAEPGFSPVSVG
RFQVVPVQSYHDPPPLSAKPEEQQQQLCILPGEGWGDGSHPSTHLCLDFL
SQEGVICGGERVIDYGTGSGILSIAAVQIGAREAVGIDVCYDALASAKAN
VLLNGVDQEVELIHPREVVPGEFIPGDVVIANILVGTLLAMRNTIMGAVK
PGGWLVLSGLRPEQVEVIKKKYGKNVQWEEGLEKVEEVRNPTFGTGAGLW
VRLVGRRVHAERWVDMLSEAAVS*

mRNA from alignment at scaffold_7:527224..528961+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3040 ID=mRNA_3040|Name=jgi.p|Nanoce1779_2|584326|organism=Nannochloropsis oceanica|type=mRNA|length=1738bp|location=Sequence derived from alignment at scaffold_7:527224..528961+ (Nannochloropsis oceanica)
AGCATACATTTTACAGCACCTATGGATTCCAAGTCTCCGATAAATCGACA
TCGACCAAGACAATGCCGACAGCAAAGGTACCGCTTGATAATTTCCAGGT
GAGTCGTGGCTTTCGCCTGGCGTCCTACCCTGTGCTTCCTGGCTCGCAAG
CCTTGGGACAATAGCGTGAATATATGATTTCGTCCGCAGACTCCAGAGGA
CGCGGTCCCCAACATGTCTACAAGGAGGTTGAATTCACAATACTGCCGCG
CTCGATATCTTATCTTGACAAATCTTGGATCGTGGCGACCATTTTCTCTT
TTTGACTGGCGTTCTGGTGCTTTCTTTGATATCCCCTATCTTGATCTCAC
CGATGTTTTACAATCTTGTCCCCCCGACTTTCTCCCAACTCCTCCACAGC
ATGCTCAGCCTTTTCAGCGCTATCTCTCAGGCTTTCATCCTACCTCCACC
ATGTCATTCTTCTTTCGCCACCCCCTCCACCGACTATCACCAAAGCCGAC
GATCCAATCTACAACCTCTACCCAATACTGCCGCTGCCGAAGCTACGGTT
GTCGAAGGGGGCGCCGCGAATCAAGAGTCAGATCGACAGTTCACAGTCAA
AATAAAAAGGCGTTTGAAAGAGCAACAACATTATCGGGTCACCTTTGTGA
AAGAGATCAAGGAGCTCGGGGAACTTACAGATGCCTTAATTGAGCAAGGC
GCGCTGGAAGTGTCCTATTTTACGGCAGAGCCGCTCTCCTTCAGTCTCAC
ACTGCCCGTCGAGGGAACAATTGAAGTAGAAGCAATCATGCATCTGGCTT
GGACCATGATTGAGCGCCAACAAGCGCATGAACGAAGCGGCGGCAGCAGC
AGCACTCTACTCGGGTGGAAATACGAAAAAGAAATTGTTCTTAATGCCAT
GAATTGGTTCAAAGCTGCTGCAGAGCCTGGATTCAGCCCCGTCAGTGTTG
GTCGTTTCCAAGTCGTGCCCGTCCAAAGCTACCACGATCCTCCACCACTT
TCCGCTAAGCCCGAAGAGCAGCAGCAGCAGTTGTGCATTCTGCCAGGCGA
GGGTTGGGGGGACGGCTCCCATCCATCTACACATTTGTGCCTTGATTTTT
TGAGTCAGGAGGGTGTGATTTGTGGAGGGGAGAGGGTTATAGACTATGGC
ACCGGGAGCGGCATTTTATCAATTGCTGCTGTGCAGATCGGGGCGAGGGA
AGCGGTGGGAATTGATGTGTGTTACGATGCTTTGGCCTCTGCCAAAGCAA
ACGTGCTGCTTAATGGTGTGGATCAAGAAGTAGAGCTGATTCATCCTCGG
GAGGTGGTACCCGGAGAGTTTATTCCTGGCGATGTGGTAATTGCGAATAT
TTTAGTGGGGACATTGCTGGCGATGAGAAACACGATTATGGGGGCGGTAA
AGCCTGGGGGATGGTTGGTCTTGTCGGGTTTGAGGCCTGAGCAGGTGGAG
GTAATCAAGAAGAAGTATGGAAAGAATGTGCAGTGGGAGGAGGGGCTAGA
GAAGGTGGAGGAGGTGAGGAACCCGACGTTTGGGACGGGGGCGGGCCTCT
GGGTTAGACTGGTGGGACGGAGGGTCCATGCCGAACGCTGGGTCGATATG
TTAAGTGAAGCAGCGGTGTCGTAACTAAATGGAGGATGAAATAATGATAA
AAGATGATGAGATGAGAGTAGACGCAACATAAAAAGAGATCGAGTAGGAA
AATTGTTTGTGTGATTCTCTTTATCAGTCGTGTACTAC

Coding sequence (CDS) from alignment at scaffold_7:527224..528961+

>mRNA_3040 ID=mRNA_3040|Name=jgi.p|Nanoce1779_2|584326|organism=Nannochloropsis oceanica|type=CDS|length=1272bp|location=Sequence derived from alignment at scaffold_7:527224..528961+ (Nannochloropsis oceanica)
ATGTTTTACAATCTTGTCCCCCCGACTTTCTCCCAACTCCTCCACAGCAT
GCTCAGCCTTTTCAGCGCTATCTCTCAGGCTTTCATCCTACCTCCACCAT
GTCATTCTTCTTTCGCCACCCCCTCCACCGACTATCACCAAAGCCGACGA
TCCAATCTACAACCTCTACCCAATACTGCCGCTGCCGAAGCTACGGTTGT
CGAAGGGGGCGCCGCGAATCAAGAGTCAGATCGACAGTTCACAGTCAAAA
TAAAAAGGCGTTTGAAAGAGCAACAACATTATCGGGTCACCTTTGTGAAA
GAGATCAAGGAGCTCGGGGAACTTACAGATGCCTTAATTGAGCAAGGCGC
GCTGGAAGTGTCCTATTTTACGGCAGAGCCGCTCTCCTTCAGTCTCACAC
TGCCCGTCGAGGGAACAATTGAAGTAGAAGCAATCATGCATCTGGCTTGG
ACCATGATTGAGCGCCAACAAGCGCATGAACGAAGCGGCGGCAGCAGCAG
CACTCTACTCGGGTGGAAATACGAAAAAGAAATTGTTCTTAATGCCATGA
ATTGGTTCAAAGCTGCTGCAGAGCCTGGATTCAGCCCCGTCAGTGTTGGT
CGTTTCCAAGTCGTGCCCGTCCAAAGCTACCACGATCCTCCACCACTTTC
CGCTAAGCCCGAAGAGCAGCAGCAGCAGTTGTGCATTCTGCCAGGCGAGG
GTTGGGGGGACGGCTCCCATCCATCTACACATTTGTGCCTTGATTTTTTG
AGTCAGGAGGGTGTGATTTGTGGAGGGGAGAGGGTTATAGACTATGGCAC
CGGGAGCGGCATTTTATCAATTGCTGCTGTGCAGATCGGGGCGAGGGAAG
CGGTGGGAATTGATGTGTGTTACGATGCTTTGGCCTCTGCCAAAGCAAAC
GTGCTGCTTAATGGTGTGGATCAAGAAGTAGAGCTGATTCATCCTCGGGA
GGTGGTACCCGGAGAGTTTATTCCTGGCGATGTGGTAATTGCGAATATTT
TAGTGGGGACATTGCTGGCGATGAGAAACACGATTATGGGGGCGGTAAAG
CCTGGGGGATGGTTGGTCTTGTCGGGTTTGAGGCCTGAGCAGGTGGAGGT
AATCAAGAAGAAGTATGGAAAGAATGTGCAGTGGGAGGAGGGGCTAGAGA
AGGTGGAGGAGGTGAGGAACCCGACGTTTGGGACGGGGGCGGGCCTCTGG
GTTAGACTGGTGGGACGGAGGGTCCATGCCGAACGCTGGGTCGATATGTT
AAGTGAAGCAGCGGTGTCGTAA

Synonyms

Publications