jgi.p|Nanoce1779_2|576869, mRNA_304 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576869
Unique Name	mRNA_304
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1193
Alignment location	scaffold_3:746242..748061 -

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Properties


Property Name	Value
TranscriptId	576955
Track	FilteredModels2
ProteinId	576869

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:746242..748061 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576869	gene_304	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576869	mRNA_304-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_304	CDS_304	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:746242..748061-
coding sequence from alignment at scaffold_3:746242..748061-

mRNA sequence

>mRNA_304 ID=mRNA_304|Name=jgi.p|Nanoce1779_2|576869|organism=Nannochloropsis oceanica|type=mRNA|length=1193bp
ACAGGAAACCAACCCCACCACGACACGGACCCGAGCATGCTCAAAGTCAA
GCTACGCCACCTCAATGTGGTGGAAGGGGAGCTGAATGCCGCGTCGGAGG
ATGCCTTGCGGGTCGCCATCCCTATCCGCGCCGATTGCCCTGAAGGAGAT
CGGGCAGTGCTTCAGCCAGCCCTTGCCAAGGGAGGACAGAACACGGAGCA
GCGGTGGCTTGGTCGGATGGTGAGCAACACCCTCGGCGAGATTCGAAAGC
GAGGGGATTTATGTGACAGCAAGGGGGCCATGCTTAAGGTGGACATCGAA
ACCGAGACCGTCGAGGTGGAAAAACTTCTGGACACCAAAAAACGTAAGCT
CGCTGAGATTTCCGAGCTTAAAGATCGTGTCGATGCAATTCGGAAGAAGG
TGCTGGTCCAAGTATCGTCCAACTGCCTCAAGGAAATAAAGGCCCTCCGA
CCCCTCCCTCCCACCTCCCACCAGGACCAACAAGGAAAAGCTGTCGCCGC
TGAGCAACAGCAACAACAAGCAGCTGCGGCCATGCAGGAAAGCGCGATCT
TGACTCAGGTCCCTCCGTTGCAGGAGCGAGCAAGGGTGTGTGTGGAAGAG
ATGGGGATGAGGTCAGAGCAGCTGGCGGCGAGGATCGAGAGCCTCCGGAC
CACCATTACGGCGGTGTCTAATTTTTTGAAGGGCGCGCCAAGTAAAGTGG
AGAAGGCGATTCGACAGAGTCACCGGAAAGGGGTGGAAGGAGAAGGACGA
GGGGTTGAAGAGGTCGAGAGGGAAGAGCAAGGGTCGGCGGAGCGGAGGAC
GAGGAGGAAGAAGGGCAGTCCGTCTCCTGCTACTTCCCCTGCCGCTGCTG
CGTCCGTGGCCCCATCGAGTGCGATTTCGATGCTCGCGGCCCATTTGGGT
CAAAGTTGAAGTAGGGAAGACAGGGGAGAACGGTAATTGTAATTTCGGTG
ATTGTTTTTTTAATCAGGTTGACTTTTGTCGTGTGTCCGTTATCTCCGCA
TGTATAAAAATGTTATCTGATTATGACGACCTCCTCGTCCTTGATCCCGC
CAATGGCAGATGAAGGGGGCAGAGGGGGCAGGAGTGTGAAGAAGAGAGAG
AGGAAGAAAGAATGAGAAAGCGGAGGAGGCAGGAAGAATGTGGGTGGGAG
AGAGGGAAGAGGGAGGGGATCAAGGTTGAGAACGTGGGTGGAA

protein sequence of jgi.p|Nanoce1779_2|576869

>mRNA_304-protein ID=mRNA_304-protein|Name=jgi.p|Nanoce1779_2|576869|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MLKVKLRHLNVVEGELNAASEDALRVAIPIRADCPEGDRAVLQPALAKGG
QNTEQRWLGRMVSNTLGEIRKRGDLCDSKGAMLKVDIETETVEVEKLLDT
KKRKLAEISELKDRVDAIRKKVLVQVSSNCLKEIKALRPLPPTSHQDQQG
KAVAAEQQQQQAAAAMQESAILTQVPPLQERARVCVEEMGMRSEQLAARI
ESLRTTITAVSNFLKGAPSKVEKAIRQSHRKGVEGEGRGVEEVEREEQGS
AERRTRRKKGSPSPATSPAAAASVAPSSAISMLAAHLGQS*

mRNA from alignment at scaffold_3:746242..748061-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_304 ID=mRNA_304|Name=jgi.p|Nanoce1779_2|576869|organism=Nannochloropsis oceanica|type=mRNA|length=1820bp|location=Sequence derived from alignment at scaffold_3:746242..748061- (Nannochloropsis oceanica)
ACAGGAAACCAACCCCACCACGACACGGACCCGAGCATGCTCAAAGTCAA
GCTACGCCACCTCAATGTGGTGGAAGGGGAGCTGAATGCCGCGTCGGAGG
ATGCCTTGCGGGTAAGTGGAGGGCTTCTTCGCTATTGTCCTCGTTAATTT
CTGCACGCTGTGCTATCAAACACTCATCTCTTCTTCGCCCTATATGCCTC
GAAGGTCGCCATCCCTATCCGCGCCGATTGCCCTGAAGGAGATCGGGCAG
TGCTTCAGCCAGCCCTTGCCAAGGGAGGACAGAACACGGAGCAGCGGTGG
CTTGGTAAGTGGTGCTGAAATCATATACTCCCACATGAGGTCACCCCTTA
TGCCCTGCACTTGTTCCTGCGTTCTTCCAGCTATCTCATTCGATCATCTC
TTGTTTCCTTTCCCCTATTTGTTTGCAGGTCTATCGGCATGCGTATTGTG
TTGCTCTCTCCTTCAGCTCTGGTTTTCCGCCTCTGCACCTCTTCTCATTT
AATCCTTTCCTTCCCCATCATCCCATCTCAACGAATGACAGGTCGGATGG
TGAGCAACACCCTCGGCGAGATTCGAAAGCGAGGGGATTTATGTGACAGC
AAGGGGGCCATGCTTAAGGTGGACATCGAAACCGAGACCGTCGAGGGTAC
GAGGGAGGAAAATAAGAGTGAGAAGGAACAGTAGGAGAGGAAGTAGAAAG
AATGGGAGGAATGGTTGCACACTCATTCTCACTCGTTTTGCGTATCTGAG
AAGAAGGAAATGGTTGAGAAGCAGCAACAGTAAAGAGACGTCATTTAAAT
GAAATTAATATTCGTATCCAAGAAGAAGGAAATGGTTGAGAAGCAGCAGC
AGTAAATGGACGTCATTTGAATGAAATTAATATTCGTATCCACTCATTCC
CCCTTATCCGACCCCTCCCCCACCCTACCCATACCAAAACCAGTGGAAAA
ACTTCTGGACACCAAAAAACGTAAGCTCGCTGAGATTTCCGAGCTTAAAG
ATCGTGTCGATGCAATTCGGAAGAAGGTGCTGGTCCAAGTATCGTCCAAC
TGCCTCAAGGAAATAAAGGCCCTCCGACCCCTCCCTCCCACCTCCCACCA
GGACCAACAAGGAAAAGCTGTCGCCGCTGAGCAACAGCAACAACAAGCAG
CTGCGGCCATGCAGGAAAGCGCGATCTTGACTCAGGTCCCTCCGTTGCAG
GAGCGAGCAAGGGTGTGTGTGGAAGAGATGGGGATGAGGTCAGAGCAGCT
GGCGGCGAGGATCGAGAGCCTCCGGACCACCATTACGGCGGTGTCTAATT
TTTTGAAGGGCGCGCCAAGTAAAGTGGAGAAGGCGATTCGACAGAGTCAC
CGGAAAGGGGTGGAAGGAGAAGGACGAGGGGTTGAAGAGGTCGAGAGGGA
AGAGCAAGGGTCGGCGGAGCGGAGGACGAGGAGGAAGAAGGGCAGTCCGT
CTCCTGCTACTTCCCCTGCCGCTGCTGCGTCCGTGGCCCCATCGAGTGCG
ATTTCGATGCTCGCGGCCCATTTGGGTCAAAGTTGAAGTAGGGAAGACAG
GGGAGAACGGTAATTGTAATTTCGGTGATTGTTTTTTTAATCAGGTTGAC
TTTTGTCGTGTGTCCGTTATCTCCGCATGTATAAAAATGTTATCTGATTA
TGACGACCTCCTCGTCCTTGATCCCGCCAATGGCAGATGAAGGGGGCAGA
GGGGGCAGGAGTGTGAAGAAGAGAGAGAGGAAGAAAGAATGAGAAAGCGG
AGGAGGCAGGAAGAATGTGGGTGGGAGAGAGGGAAGAGGGAGGGGATCAA
GGTTGAGAACGTGGGTGGAA

Coding sequence (CDS) from alignment at scaffold_3:746242..748061-

>mRNA_304 ID=mRNA_304|Name=jgi.p|Nanoce1779_2|576869|organism=Nannochloropsis oceanica|type=CDS|length=3492bp|location=Sequence derived from alignment at scaffold_3:746242..748061- (Nannochloropsis oceanica)
TGGAAAAACTTCTGGACACCAAAAAACGTAAGCTCGCTGAGATTTCCGAG
CTTAAAGATCGTGTCGATGCAATTCGGAAGAAGGTGCTGGTCCAAGTATC
GTCCAACTGCCTCAAGGAAATAAAGGCCCTCCGACCCCTCCCTCCCACCT
CCCACCAGGACCAACAAGGAAAAGCTGTCGCCGCTGAGCAACAGCAACAA
CAAGCAGCTGCGGCCATGCAGGAAAGCGCGATCTTGACTCAGGTCCCTCC
GTTGCAGGAGCGAGCAAGGGTGTGTGTGGAAGAGATGGGGATGAGGTCAG
AGCAGCTGGCGGCGAGGATCGAGAGCCTCCGGACCACCATTACGGCGGTG
TCTAATTTTTTGAAGGGCGCGCCAAGTAAAGTGGAGAAGGCGATTCGACA
GAGTCACCGGAAAGGGGTGGAAGGAGAAGGACGAGGGGTTGAAGAGGTCG
AGAGGGAAGAGCAAGGGTCGGCGGAGCGGAGGACGAGGAGGAAGAAGGGC
AGTCCGTCTCCTGCTACTTCCCCTGCCGCTGCTGCGTCCGTGGCCCCATC
GAGTGCGATTTCGATGCTCGCGGCCCATTTGGGTCAAAGTTGAGTCGGAT
GGTGAGCAACACCCTCGGCGAGATTCGAAAGCGAGGGGATTTATGTGACA
GCAAGGGGGCCATGCTTAAGGTGGACATCGAAACCGAGACCGTCGAGGGT
CGCCATCCCTATCCGCGCCGATTGCCCTGAAGGAGATCGGGCAGTGCTTC
AGCCAGCCCTTGCCAAGGGAGGACAGAACACGGAGCAGCGGTGGCTTGAT
GCTCAAAGTCAAGCTACGCCACCTCAATGTGGTGGAAGGGGAGCTGAATG
CCGCGTCGGAGGATGCCTTGCGGTGGAAAAACTTCTGGACACCAAAAAAC
GTAAGCTCGCTGAGATTTCCGAGCTTAAAGATCGTGTCGATGCAATTCGG
AAGAAGGTGCTGGTCCAAGTATCGTCCAACTGCCTCAAGGAAATAAAGGC
CCTCCGACCCCTCCCTCCCACCTCCCACCAGGACCAACAAGGAAAAGCTG
TCGCCGCTGAGCAACAGCAACAACAAGCAGCTGCGGCCATGCAGGAAAGC
GCGATCTTGACTCAGGTCCCTCCGTTGCAGGAGCGAGCAAGGGTGTGTGT
GGAAGAGATGGGGATGAGGTCAGAGCAGCTGGCGGCGAGGATCGAGAGCC
TCCGGACCACCATTACGGCGGTGTCTAATTTTTTGAAGGGCGCGCCAAGT
AAAGTGGAGAAGGCGATTCGACAGAGTCACCGGAAAGGGGTGGAAGGAGA
AGGACGAGGGGTTGAAGAGGTCGAGAGGGAAGAGCAAGGGTCGGCGGAGC
GGAGGACGAGGAGGAAGAAGGGCAGTCCGTCTCCTGCTACTTCCCCTGCC
GCTGCTGCGTCCGTGGCCCCATCGAGTGCGATTTCGATGCTCGCGGCCCA
TTTGGGTCAAAGTTGAGTCGGATGGTGAGCAACACCCTCGGCGAGATTCG
AAAGCGAGGGGATTTATGTGACAGCAAGGGGGCCATGCTTAAGGTGGACA
TCGAAACCGAGACCGTCGAGGGTCGCCATCCCTATCCGCGCCGATTGCCC
TGAAGGAGATCGGGCAGTGCTTCAGCCAGCCCTTGCCAAGGGAGGACAGA
ACACGGAGCAGCGGTGGCTTGATGCTCAAAGTCAAGCTACGCCACCTCAA
TGTGGTGGAAGGGGAGCTGAATGCCGCGTCGGAGGATGCCTTGCGGTGGA
AAAACTTCTGGACACCAAAAAACGTAAGCTCGCTGAGATTTCCGAGCTTA
AAGATCGTGTCGATGCAATTCGGAAGAAGGTGCTGGTCCAAGTATCGTCC
AACTGCCTCAAGGAAATAAAGGCCCTCCGACCCCTCCCTCCCACCTCCCA
CCAGGACCAACAAGGAAAAGCTGTCGCCGCTGAGCAACAGCAACAACAAG
CAGCTGCGGCCATGCAGGAAAGCGCGATCTTGACTCAGGTCCCTCCGTTG
CAGGAGCGAGCAAGGGTGTGTGTGGAAGAGATGGGGATGAGGTCAGAGCA
GCTGGCGGCGAGGATCGAGAGCCTCCGGACCACCATTACGGCGGTGTCTA
ATTTTTTGAAGGGCGCGCCAAGTAAAGTGGAGAAGGCGATTCGACAGAGT
CACCGGAAAGGGGTGGAAGGAGAAGGACGAGGGGTTGAAGAGGTCGAGAG
GGAAGAGCAAGGGTCGGCGGAGCGGAGGACGAGGAGGAAGAAGGGCAGTC
CGTCTCCTGCTACTTCCCCTGCCGCTGCTGCGTCCGTGGCCCCATCGAGT
GCGATTTCGATGCTCGCGGCCCATTTGGGTCAAAGTTGAGTCGGATGGTG
AGCAACACCCTCGGCGAGATTCGAAAGCGAGGGGATTTATGTGACAGCAA
GGGGGCCATGCTTAAGGTGGACATCGAAACCGAGACCGTCGAGGGTCGCC
ATCCCTATCCGCGCCGATTGCCCTGAAGGAGATCGGGCAGTGCTTCAGCC
AGCCCTTGCCAAGGGAGGACAGAACACGGAGCAGCGGTGGCTTGATGCTC
AAAGTCAAGCTACGCCACCTCAATGTGGTGGAAGGGGAGCTGAATGCCGC
GTCGGAGGATGCCTTGCGGTGGAAAAACTTCTGGACACCAAAAAACGTAA
GCTCGCTGAGATTTCCGAGCTTAAAGATCGTGTCGATGCAATTCGGAAGA
AGGTGCTGGTCCAAGTATCGTCCAACTGCCTCAAGGAAATAAAGGCCCTC
CGACCCCTCCCTCCCACCTCCCACCAGGACCAACAAGGAAAAGCTGTCGC
CGCTGAGCAACAGCAACAACAAGCAGCTGCGGCCATGCAGGAAAGCGCGA
TCTTGACTCAGGTCCCTCCGTTGCAGGAGCGAGCAAGGGTGTGTGTGGAA
GAGATGGGGATGAGGTCAGAGCAGCTGGCGGCGAGGATCGAGAGCCTCCG
GACCACCATTACGGCGGTGTCTAATTTTTTGAAGGGCGCGCCAAGTAAAG
TGGAGAAGGCGATTCGACAGAGTCACCGGAAAGGGGTGGAAGGAGAAGGA
CGAGGGGTTGAAGAGGTCGAGAGGGAAGAGCAAGGGTCGGCGGAGCGGAG
GACGAGGAGGAAGAAGGGCAGTCCGTCTCCTGCTACTTCCCCTGCCGCTG
CTGCGTCCGTGGCCCCATCGAGTGCGATTTCGATGCTCGCGGCCCATTTG
GGTCAAAGTTGAGTCGGATGGTGAGCAACACCCTCGGCGAGATTCGAAAG
CGAGGGGATTTATGTGACAGCAAGGGGGCCATGCTTAAGGTGGACATCGA
AACCGAGACCGTCGAGGGTCGCCATCCCTATCCGCGCCGATTGCCCTGAA
GGAGATCGGGCAGTGCTTCAGCCAGCCCTTGCCAAGGGAGGACAGAACAC
GGAGCAGCGGTGGCTTGATGCTCAAAGTCAAGCTACGCCACCTCAATGTG
GTGGAAGGGGAGCTGAATGCCGCGTCGGAGGATGCCTTGCGG

Synonyms

Publications