jgi.p|Nanoce1779_2|638187, mRNA_3036 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|638187
Unique NamemRNA_3036
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length522
Alignment locationscaffold_7:511194..512557 +

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Properties
Property NameValue
TranscriptId638273
TrackFilteredModels2
ProteinId638187
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:511194..512557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638187gene_3036Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638187mRNA_3036-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3036CDS_3036Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3036 ID=mRNA_3036|Name=jgi.p|Nanoce1779_2|638187|organism=Nannochloropsis oceanica|type=mRNA|length=522bp
ATGCGTATATTCGCTCTTGCGGCGTTGGTTTGCGGCTGCAGCCTCAGCGT
CTCGAAAGCCTTCATCCTTCCCTTGTCCGGCACCAGAGGGGTCCATTGCC
GAAGAACTTCGGCTGTCAAAGTTGTACCGCTTGAGCTCGAAGGCCAACTT
GACCCCACCAAATCGTGGGAGGTGAAGATGACGTATCTCGGAGAGACCAA
GGTGCTGACCGTTTGTGAGGACACCCCAATCTTGGAGGCTGCCCTAAAGG
AGTGGGACGTGCCTTGCTCTTGCCGCAACGGAATTTGCACCACGTGCGCA
GGCCGTATCATTGCCATGCCGGGCTCGAAAAAGGAGGCTATCCACGGGCT
TTCAGCCGAGCAGTCCAAGAATGGTTTCGTGCTCACCTGCCAGACGCACC
CCATCGGGCCGGGCTTGGAGGTGGAGTTGGGCATGTATGACACCGTCTAC
GAGTCACAGTACGGCCAGTACGAAAAGAAGGCTACCACGGAGCAAAAGAG
CAAGTTCAATGTCTTCGGCTAA
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protein sequence of jgi.p|Nanoce1779_2|638187

>mRNA_3036-protein ID=mRNA_3036-protein|Name=jgi.p|Nanoce1779_2|638187|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MRIFALAALVCGCSLSVSKAFILPLSGTRGVHCRRTSAVKVVPLELEGQL
DPTKSWEVKMTYLGETKVLTVCEDTPILEAALKEWDVPCSCRNGICTTCA
GRIIAMPGSKKEAIHGLSAEQSKNGFVLTCQTHPIGPGLEVELGMYDTVY
ESQYGQYEKKATTEQKSKFNVFG*
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mRNA from alignment at scaffold_7:511194..512557+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3036 ID=mRNA_3036|Name=jgi.p|Nanoce1779_2|638187|organism=Nannochloropsis oceanica|type=mRNA|length=1364bp|location=Sequence derived from alignment at scaffold_7:511194..512557+ (Nannochloropsis oceanica)
ATGCGTATATTCGCTCTTGCGGCGTTGGTTTGCGGCTGCAGCCTCAGCGT
CTCGAAAGCCTTCATCCTTCCCTTGTCCGGCACCAGAGGGGTCCATTGCC
GAAGGTAAGTCTTCCGACTGCAGGGCGGGGGTGTCCTTGTCCCATGCGAG
CCACGCAAGCTAACATTCCTCTCTCCCACCCTGAACAGAACTTCGGCTGT
CAAAGTTGTACCGCTTGAGCTCGAAGGCCAACTTGACCCCACCAAGTAAG
TCGTATACTGACTCGTGAATAATATCTCGGACAGCCTACGGCAAGAGCGA
GTTTTATATGGCTCCTTCAAAGAACATGCAAATGAAGGAAGGCAAAAAAT
GTGACTATGTCGATATTCATTGTTATCCTGCAGTGCTATGTATCTTCCCC
CTTGACAGTCGCATGTGCCAACCCATCCCACCTCTTGGACCGTCTTTTGT
CCTTGTCCAGCGCCTTGTCTCACACGACCTTTTCTATTTAAACCAAAAAC
CCGCTCTGGACACAGATCGTGGGAGGTGAAGATGACGTATCTCGGAGAGA
CCAAGGTGCTGACCGTTTGTGAGGACACCCCAATCTTGGAGGCTGCCCTA
AAGGTAGGTGTTGCCCAAATGAGACTCTCCCGATGACACTCTGGAGGGGG
CCTTAATCAGAGAGGGCGATAAGGGAGGAAGCGGGCACATTGTTTGGTTT
ACTGCAAAGATTGGAGGATACAGCATAAAATGTCTTATAATTCTAACTAT
ACATATTCCCCTTGACCAAAAGGAGTGGGACGTGCCTTGCTCTTGCCGCA
ACGGAATTTGCACCACGTGCGCAGGCCGTATCATTGCCATGCCGGGCTCG
AAAAAGGTAAGCACTAGCTTTACGTTAATTTGAAAGGGGGGAAGCCCTGT
TGCGTGAGGGGCAGGCACGCCGCTTGTGGCACCGTTGCTTTTTCCTATCG
ACACAATAACCATTCCCCTCCCCCTTCTCCCTTGCCCACACCGTTTCTAC
CCCATCACAGGAGGCTATCCACGGGCTTTCAGCCGAGCAGTCCAAGAATG
GTTTCGTGCTCACCTGCCAGACGCACCCCATCGGGCCGGGCTTGGAGGTG
GAGTTGGGCATGTATGACACCGTCTACGAGTCACAGTACGGCCAGTACGA
AAAGAAGGTGGGTGATGCGTAATTAAGGAAAGGTGGGGGGGTACACTTTG
CGTGGAAGCGTGAACAGCACCTATGCTTGGAGAGACGTGTTTCGTCAGGC
ATCTCCATTGTCATCATTCTCGCTGGCGAATTTTACACGCCACCATTTCA
ATTGCCCCGATTAAATTCACAGGCTACCACGGAGCAAAAGAGCAAGTTCA
ATGTCTTCGGCTAA
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Coding sequence (CDS) from alignment at scaffold_7:511194..512557+

>mRNA_3036 ID=mRNA_3036|Name=jgi.p|Nanoce1779_2|638187|organism=Nannochloropsis oceanica|type=CDS|length=3132bp|location=Sequence derived from alignment at scaffold_7:511194..512557+ (Nannochloropsis oceanica)
ATGCGTATATTCGCTCTTGCGGCGTTGGTTTGCGGCTGCAGCCTCAGCGT
CTCGAAAGCCTTCATCCTTCCCTTGTCCGGCACCAGAGGGGTCCATTGCC
GAAGAACTTCGGCTGTCAAAGTTGTACCGCTTGAGCTCGAAGGCCAACTT
GACCCCACCAAATCGTGGGAGGTGAAGATGACGTATCTCGGAGAGACCAA
GGTGCTGACCGTTTGTGAGGACACCCCAATCTTGGAGGCTGCCCTAAAGG
AGTGGGACGTGCCTTGCTCTTGCCGCAACGGAATTTGCACCACGTGCGCA
GGCCGTATCATTGCCATGCCGGGCTCGAAAAAGGAGGCTATCCACGGGCT
TTCAGCCGAGCAGTCCAAGAATGGTTTCGTGCTCACCTGCCAGACGCACC
CCATCGGGCCGGGCTTGGAGGTGGAGTTGGGCATGTATGACACCGTCTAC
GAGTCACAGTACGGCCAGTACGAAAAGAAGGCTACCACGGAGCAAAAGAG
CAAGTTCAATGTCTTCGGCTAAATGCGTATATTCGCTCTTGCGGCGTTGG
TTTGCGGCTGCAGCCTCAGCGTCTCGAAAGCCTTCATCCTTCCCTTGTCC
GGCACCAGAGGGGTCCATTGCCGAAGAACTTCGGCTGTCAAAGTTGTACC
GCTTGAGCTCGAAGGCCAACTTGACCCCACCAAATCGTGGGAGGTGAAGA
TGACGTATCTCGGAGAGACCAAGGTGCTGACCGTTTGTGAGGACACCCCA
ATCTTGGAGGCTGCCCTAAAGGAGTGGGACGTGCCTTGCTCTTGCCGCAA
CGGAATTTGCACCACGTGCGCAGGCCGTATCATTGCCATGCCGGGCTCGA
AAAAGGAGGCTATCCACGGGCTTTCAGCCGAGCAGTCCAAGAATGGTTTC
GTGCTCACCTGCCAGACGCACCCCATCGGGCCGGGCTTGGAGGTGGAGTT
GGGCATGTATGACACCGTCTACGAGTCACAGTACGGCCAGTACGAAAAGA
AGGCTACCACGGAGCAAAAGAGCAAGTTCAATGTCTTCGGCTAAATGCGT
ATATTCGCTCTTGCGGCGTTGGTTTGCGGCTGCAGCCTCAGCGTCTCGAA
AGCCTTCATCCTTCCCTTGTCCGGCACCAGAGGGGTCCATTGCCGAAGAA
CTTCGGCTGTCAAAGTTGTACCGCTTGAGCTCGAAGGCCAACTTGACCCC
ACCAAATCGTGGGAGGTGAAGATGACGTATCTCGGAGAGACCAAGGTGCT
GACCGTTTGTGAGGACACCCCAATCTTGGAGGCTGCCCTAAAGGAGTGGG
ACGTGCCTTGCTCTTGCCGCAACGGAATTTGCACCACGTGCGCAGGCCGT
ATCATTGCCATGCCGGGCTCGAAAAAGGAGGCTATCCACGGGCTTTCAGC
CGAGCAGTCCAAGAATGGTTTCGTGCTCACCTGCCAGACGCACCCCATCG
GGCCGGGCTTGGAGGTGGAGTTGGGCATGTATGACACCGTCTACGAGTCA
CAGTACGGCCAGTACGAAAAGAAGGCTACCACGGAGCAAAAGAGCAAGTT
CAATGTCTTCGGCTAAATGCGTATATTCGCTCTTGCGGCGTTGGTTTGCG
GCTGCAGCCTCAGCGTCTCGAAAGCCTTCATCCTTCCCTTGTCCGGCACC
AGAGGGGTCCATTGCCGAAGAACTTCGGCTGTCAAAGTTGTACCGCTTGA
GCTCGAAGGCCAACTTGACCCCACCAAATCGTGGGAGGTGAAGATGACGT
ATCTCGGAGAGACCAAGGTGCTGACCGTTTGTGAGGACACCCCAATCTTG
GAGGCTGCCCTAAAGGAGTGGGACGTGCCTTGCTCTTGCCGCAACGGAAT
TTGCACCACGTGCGCAGGCCGTATCATTGCCATGCCGGGCTCGAAAAAGG
AGGCTATCCACGGGCTTTCAGCCGAGCAGTCCAAGAATGGTTTCGTGCTC
ACCTGCCAGACGCACCCCATCGGGCCGGGCTTGGAGGTGGAGTTGGGCAT
GTATGACACCGTCTACGAGTCACAGTACGGCCAGTACGAAAAGAAGGCTA
CCACGGAGCAAAAGAGCAAGTTCAATGTCTTCGGCTAAATGCGTATATTC
GCTCTTGCGGCGTTGGTTTGCGGCTGCAGCCTCAGCGTCTCGAAAGCCTT
CATCCTTCCCTTGTCCGGCACCAGAGGGGTCCATTGCCGAAGAACTTCGG
CTGTCAAAGTTGTACCGCTTGAGCTCGAAGGCCAACTTGACCCCACCAAA
TCGTGGGAGGTGAAGATGACGTATCTCGGAGAGACCAAGGTGCTGACCGT
TTGTGAGGACACCCCAATCTTGGAGGCTGCCCTAAAGGAGTGGGACGTGC
CTTGCTCTTGCCGCAACGGAATTTGCACCACGTGCGCAGGCCGTATCATT
GCCATGCCGGGCTCGAAAAAGGAGGCTATCCACGGGCTTTCAGCCGAGCA
GTCCAAGAATGGTTTCGTGCTCACCTGCCAGACGCACCCCATCGGGCCGG
GCTTGGAGGTGGAGTTGGGCATGTATGACACCGTCTACGAGTCACAGTAC
GGCCAGTACGAAAAGAAGGCTACCACGGAGCAAAAGAGCAAGTTCAATGT
CTTCGGCTAAATGCGTATATTCGCTCTTGCGGCGTTGGTTTGCGGCTGCA
GCCTCAGCGTCTCGAAAGCCTTCATCCTTCCCTTGTCCGGCACCAGAGGG
GTCCATTGCCGAAGAACTTCGGCTGTCAAAGTTGTACCGCTTGAGCTCGA
AGGCCAACTTGACCCCACCAAATCGTGGGAGGTGAAGATGACGTATCTCG
GAGAGACCAAGGTGCTGACCGTTTGTGAGGACACCCCAATCTTGGAGGCT
GCCCTAAAGGAGTGGGACGTGCCTTGCTCTTGCCGCAACGGAATTTGCAC
CACGTGCGCAGGCCGTATCATTGCCATGCCGGGCTCGAAAAAGGAGGCTA
TCCACGGGCTTTCAGCCGAGCAGTCCAAGAATGGTTTCGTGCTCACCTGC
CAGACGCACCCCATCGGGCCGGGCTTGGAGGTGGAGTTGGGCATGTATGA
CACCGTCTACGAGTCACAGTACGGCCAGTACGAAAAGAAGGCTACCACGG
AGCAAAAGAGCAAGTTCAATGTCTTCGGCTAA
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Synonyms
Publications