jgi.p|Nanoce1779_2|584273, mRNA_3033 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584273
Unique Name	mRNA_3033
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1187
Alignment location	scaffold_7:503566..505027 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584359
Track	FilteredModels2
ProteinId	584273

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:503566..505027 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584273	gene_3033	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584273	mRNA_3033-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3033	CDS_3033	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:503566..505027+
coding sequence from alignment at scaffold_7:503566..505027+

mRNA sequence

>mRNA_3033 ID=mRNA_3033|Name=jgi.p|Nanoce1779_2|584273|organism=Nannochloropsis oceanica|type=mRNA|length=1187bp
AGCCAGGTCTTGCCCATGGCAAAAAGCGCCACTCCAAGGAACAAGCTGCT
CGTTGTCGGGAGCAGTGCCGACTCGGACTGCAGAGGCAGCAGAAGTAGTA
GCGGTAGCAGTGGTGAACACAATATAACGCATCCAGCCCGCTTTGTGGCC
TCCTTGATGGCTGGTGGGAAGCAGCGGGAGGCGGAGGAAGAGGAGCAGCT
CAACCAAGATCCTGACGATGACAGTGTGGTATTTTGGACAATCGAGACCA
AGTACTACAAGGCCGAGCTTGCGCTCCACCTTGCTGCGAAGGCGGGATCT
CCTAGTGGCGGGCAACCGAAGCAGGAAAAGGAATCTTTCCCCTTTTTTGC
GCCTGGGAAAGACTTTCAAGGTATAATTGTTGTTTGGAAGGGCGGCGGTT
CCCCCGGTGAGAACGAGATATCGGGGTTGAAAGAGATTGAACCATGGCTA
CGGGCCGCAAGTGCTCAAGACAGTTTAAAGCTTTGCCTGGTCGTTGGCAT
ACTCGACAGCAATAGCAAGGATGCAGAGAGGCCGTCTGGGCGGGCGCTCG
AGGATGATGACGACGACTCAATGCAGCGGCGGCGCTCCGTCTGGTGCCTG
AAGTATGGCTTCGAGTACGTGGAGGTGGACTACACGCGGCAGGTTCGGAT
GTTGCCGAAGGAGTTGCGGGAGAAGGAAGGGCTGGAGCGTGTCTGCGAGT
GCATCGAGGCGACATCTTGGCAGTACATTGATTGTTGCTCGAGTGGCAGG
TCTCTTTGCTGCAGGCCTGGGGAGCCGGACGAAAAGGTCTGTGAGCAGCC
GCAAGATAAAGCGGGCTCCTTGGCCTCAGATCAGAATGACGTGAACTTGA
CCTGCCGGACACGCCTTGGCCATAGCAACGTTGCCGAGGGGACTCAAGAT
AAGCATGGAGAAGAGTGGGAAGATGACGCGGGATTAGAACGGCTATTTGC
GAAGTTTCATGCTGAGAGGGAGAGAGCTCACAGTGGTCAGTACGATGACG
AGCAGCGAAGAGCGAGGGCAGCGGAGATGGCCCTTCAATTCGCTCTAAAG
CTTGGCATCTTTGAAGATGATGAGTAGCGTAAGATGGTCAGTAAGTGTTG
TGGTAGAGAAAAAATATACTGGGCCTTGGCACGTACAGTTCTGGAACGAA
GCCGATAAGGAACCCGGGGTGGGCATTGGGGGGGGGG

protein sequence of jgi.p|Nanoce1779_2|584273

>mRNA_3033-protein ID=mRNA_3033-protein|Name=jgi.p|Nanoce1779_2|584273|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MAKSATPRNKLLVVGSSADSDCRGSRSSSGSSGEHNITHPARFVASLMAG
GKQREAEEEEQLNQDPDDDSVVFWTIETKYYKAELALHLAAKAGSPSGGQ
PKQEKESFPFFAPGKDFQGIIVVWKGGGSPGENEISGLKEIEPWLRAASA
QDSLKLCLVVGILDSNSKDAERPSGRALEDDDDDSMQRRRSVWCLKYGFE
YVEVDYTRQVRMLPKELREKEGLERVCECIEATSWQYIDCCSSGRSLCCR
PGEPDEKVCEQPQDKAGSLASDQNDVNLTCRTRLGHSNVAEGTQDKHGEE
WEDDAGLERLFAKFHAERERAHSGQYDDEQRRARAAEMALQFALKLGIFE
DDE*

mRNA from alignment at scaffold_7:503566..505027+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3033 ID=mRNA_3033|Name=jgi.p|Nanoce1779_2|584273|organism=Nannochloropsis oceanica|type=mRNA|length=1462bp|location=Sequence derived from alignment at scaffold_7:503566..505027+ (Nannochloropsis oceanica)
AGCCAGGTCTTGCCCATGGCAAAAAGCGCCACTCCAAGGAACAAGCTGCT
CGTTGTCGGGAGCAGTGCCGACTCGGACTGCAGAGGCAGCAGAAGTAGTA
GCGGTAGCAGTGGTGAACACAATATAACGCATCCAGCCCGCTTTGTGGCC
TCCTTGATGGCTGGTGGGAAGCAGCGGGAGGCGGAGGAAGAGGAGCAGCT
CAACCAAGGTACGCCCCGGGAGAGTGATGGTGCATACATCCCTTTTCCTC
GCTCGCATCACCTCTCTTGTCTTGTTGGCCCACGTCAAAATGTTTCCCTT
ACCCTTAGATCCTGACGATGACAGTGTGGTATTTTGGACAATCGAGACCA
AGTACTACAAGGCCGAGCTTGCGCTCCACCTTGCTGCGAAGGCGGGATCT
CCTAGTGGCGGGCAACCGAAGCAGGAAAAGGAATCTTTCCCCTTTTTTGC
GCCTGGGAAAGACTTTCAAGGTATAATTGTTGTTTGGAAGGGCGGCGGTT
CCCCCGGTGAGAACGAGATATCGGGGTTGAAAGAGATTGAACCATGGTAC
GTAAATGCTTAGAAGATGAGAGAACGGTTCGTCGACACCTAGAGATTTCT
TACTTATTTTTGCACCACAGGCTACGGGCCGCAAGTGCTCAAGACAGTTT
AAAGCTTTGCCTGGTCGTTGGCATACTCGACAGCAATAGCAAGGATGCAG
AGAGGCCGTCTGGGCGGGCGCTCGAGGATGATGACGACGACTCAATGCAG
CGGCGGCGCTCCGTCTGGTAACTGAAAGATTCTTAAAACTCATGTATTAT
CCAAATAATACAATTGGCTACCAGAATACAAGCCTATCATCATTGACCCC
ATCCCTTGTACCCTGCAGGTGCCTGAAGTATGGCTTCGAGTACGTGGAGG
TGGACTACACGCGGCAGGTTCGGATGTTGCCGAAGGAGTTGCGGGAGAAG
GAAGGGCTGGAGCGTGTCTGCGAGTGCATCGAGGCGACATCTTGGCAGTA
CATTGATTGTTGCTCGAGTGGCAGGTCTCTTTGCTGCAGGCCTGGGGAGC
CGGACGAAAAGGTCTGTGAGCAGCCGCAAGATAAAGCGGGCTCCTTGGCC
TCAGATCAGAATGACGTGAACTTGACCTGCCGGACACGCCTTGGCCATAG
CAACGTTGCCGAGGGGACTCAAGATAAGCATGGAGAAGAGTGGGAAGATG
ACGCGGGATTAGAACGGCTATTTGCGAAGTTTCATGCTGAGAGGGAGAGA
GCTCACAGTGGTCAGTACGATGACGAGCAGCGAAGAGCGAGGGCAGCGGA
GATGGCCCTTCAATTCGCTCTAAAGCTTGGCATCTTTGAAGATGATGAGT
AGCGTAAGATGGTCAGTAAGTGTTGTGGTAGAGAAAAAATATACTGGGCC
TTGGCACGTACAGTTCTGGAACGAAGCCGATAAGGAACCCGGGGTGGGCA
TTGGGGGGGGGG

Coding sequence (CDS) from alignment at scaffold_7:503566..505027+

>mRNA_3033 ID=mRNA_3033|Name=jgi.p|Nanoce1779_2|584273|organism=Nannochloropsis oceanica|type=CDS|length=4248bp|location=Sequence derived from alignment at scaffold_7:503566..505027+ (Nannochloropsis oceanica)
ATGGCAAAAAGCGCCACTCCAAGGAACAAGCTGCTCGTTGTCGGGAGCAG
TGCCGACTCGGACTGCAGAGGCAGCAGAAGTAGTAGCGGTAGCAGTGGTG
AACACAATATAACGCATCCAGCCCGCTTTGTGGCCTCCTTGATGGCTGGT
GGGAAGCAGCGGGAGGCGGAGGAAGAGGAGCAGCTCAACCAAGATCCTGA
CGATGACAGTGTGGTATTTTGGACAATCGAGACCAAGTACTACAAGGCCG
AGCTTGCGCTCCACCTTGCTGCGAAGGCGGGATCTCCTAGTGGCGGGCAA
CCGAAGCAGGAAAAGGAATCTTTCCCCTTTTTTGCGCCTGGGAAAGACTT
TCAAGGTATAATTGTTGTTTGGAAGGGCGGCGGTTCCCCCGGTGAGAACG
AGATATCGGGGTTGAAAGAGATTGAACCATGGCTACGGGCCGCAAGTGCT
CAAGACAGTTTAAAGCTTTGCCTGGTCGTTGGCATACTCGACAGCAATAG
CAAGGATGCAGAGAGGCCGTCTGGGCGGGCGCTCGAGGATGATGACGACG
ACTCAATGCAGCGGCGGCGCTCCGTCTGGTGCCTGAAGTATGGCTTCGAG
TACGTGGAGGTGGACTACACGCGGCAGGTTCGGATGTTGCCGAAGGAGTT
GCGGGAGAAGGAAGGGCTGGAGCGTGTCTGCGAGTGCATCGAGGCGACAT
CTTGGCAGTACATTGATTGTTGCTCGAGTGGCAGGTCTCTTTGCTGCAGG
CCTGGGGAGCCGGACGAAAAGGTCTGTGAGCAGCCGCAAGATAAAGCGGG
CTCCTTGGCCTCAGATCAGAATGACGTGAACTTGACCTGCCGGACACGCC
TTGGCCATAGCAACGTTGCCGAGGGGACTCAAGATAAGCATGGAGAAGAG
TGGGAAGATGACGCGGGATTAGAACGGCTATTTGCGAAGTTTCATGCTGA
GAGGGAGAGAGCTCACAGTGGTCAGTACGATGACGAGCAGCGAAGAGCGA
GGGCAGCGGAGATGGCCCTTCAATTCGCTCTAAAGCTTGGCATCTTTGAA
GATGATGAGTAGATGGCAAAAAGCGCCACTCCAAGGAACAAGCTGCTCGT
TGTCGGGAGCAGTGCCGACTCGGACTGCAGAGGCAGCAGAAGTAGTAGCG
GTAGCAGTGGTGAACACAATATAACGCATCCAGCCCGCTTTGTGGCCTCC
TTGATGGCTGGTGGGAAGCAGCGGGAGGCGGAGGAAGAGGAGCAGCTCAA
CCAAGATCCTGACGATGACAGTGTGGTATTTTGGACAATCGAGACCAAGT
ACTACAAGGCCGAGCTTGCGCTCCACCTTGCTGCGAAGGCGGGATCTCCT
AGTGGCGGGCAACCGAAGCAGGAAAAGGAATCTTTCCCCTTTTTTGCGCC
TGGGAAAGACTTTCAAGGTATAATTGTTGTTTGGAAGGGCGGCGGTTCCC
CCGGTGAGAACGAGATATCGGGGTTGAAAGAGATTGAACCATGGCTACGG
GCCGCAAGTGCTCAAGACAGTTTAAAGCTTTGCCTGGTCGTTGGCATACT
CGACAGCAATAGCAAGGATGCAGAGAGGCCGTCTGGGCGGGCGCTCGAGG
ATGATGACGACGACTCAATGCAGCGGCGGCGCTCCGTCTGGTGCCTGAAG
TATGGCTTCGAGTACGTGGAGGTGGACTACACGCGGCAGGTTCGGATGTT
GCCGAAGGAGTTGCGGGAGAAGGAAGGGCTGGAGCGTGTCTGCGAGTGCA
TCGAGGCGACATCTTGGCAGTACATTGATTGTTGCTCGAGTGGCAGGTCT
CTTTGCTGCAGGCCTGGGGAGCCGGACGAAAAGGTCTGTGAGCAGCCGCA
AGATAAAGCGGGCTCCTTGGCCTCAGATCAGAATGACGTGAACTTGACCT
GCCGGACACGCCTTGGCCATAGCAACGTTGCCGAGGGGACTCAAGATAAG
CATGGAGAAGAGTGGGAAGATGACGCGGGATTAGAACGGCTATTTGCGAA
GTTTCATGCTGAGAGGGAGAGAGCTCACAGTGGTCAGTACGATGACGAGC
AGCGAAGAGCGAGGGCAGCGGAGATGGCCCTTCAATTCGCTCTAAAGCTT
GGCATCTTTGAAGATGATGAGTAGATGGCAAAAAGCGCCACTCCAAGGAA
CAAGCTGCTCGTTGTCGGGAGCAGTGCCGACTCGGACTGCAGAGGCAGCA
GAAGTAGTAGCGGTAGCAGTGGTGAACACAATATAACGCATCCAGCCCGC
TTTGTGGCCTCCTTGATGGCTGGTGGGAAGCAGCGGGAGGCGGAGGAAGA
GGAGCAGCTCAACCAAGATCCTGACGATGACAGTGTGGTATTTTGGACAA
TCGAGACCAAGTACTACAAGGCCGAGCTTGCGCTCCACCTTGCTGCGAAG
GCGGGATCTCCTAGTGGCGGGCAACCGAAGCAGGAAAAGGAATCTTTCCC
CTTTTTTGCGCCTGGGAAAGACTTTCAAGGTATAATTGTTGTTTGGAAGG
GCGGCGGTTCCCCCGGTGAGAACGAGATATCGGGGTTGAAAGAGATTGAA
CCATGGCTACGGGCCGCAAGTGCTCAAGACAGTTTAAAGCTTTGCCTGGT
CGTTGGCATACTCGACAGCAATAGCAAGGATGCAGAGAGGCCGTCTGGGC
GGGCGCTCGAGGATGATGACGACGACTCAATGCAGCGGCGGCGCTCCGTC
TGGTGCCTGAAGTATGGCTTCGAGTACGTGGAGGTGGACTACACGCGGCA
GGTTCGGATGTTGCCGAAGGAGTTGCGGGAGAAGGAAGGGCTGGAGCGTG
TCTGCGAGTGCATCGAGGCGACATCTTGGCAGTACATTGATTGTTGCTCG
AGTGGCAGGTCTCTTTGCTGCAGGCCTGGGGAGCCGGACGAAAAGGTCTG
TGAGCAGCCGCAAGATAAAGCGGGCTCCTTGGCCTCAGATCAGAATGACG
TGAACTTGACCTGCCGGACACGCCTTGGCCATAGCAACGTTGCCGAGGGG
ACTCAAGATAAGCATGGAGAAGAGTGGGAAGATGACGCGGGATTAGAACG
GCTATTTGCGAAGTTTCATGCTGAGAGGGAGAGAGCTCACAGTGGTCAGT
ACGATGACGAGCAGCGAAGAGCGAGGGCAGCGGAGATGGCCCTTCAATTC
GCTCTAAAGCTTGGCATCTTTGAAGATGATGAGTAGATGGCAAAAAGCGC
CACTCCAAGGAACAAGCTGCTCGTTGTCGGGAGCAGTGCCGACTCGGACT
GCAGAGGCAGCAGAAGTAGTAGCGGTAGCAGTGGTGAACACAATATAACG
CATCCAGCCCGCTTTGTGGCCTCCTTGATGGCTGGTGGGAAGCAGCGGGA
GGCGGAGGAAGAGGAGCAGCTCAACCAAGATCCTGACGATGACAGTGTGG
TATTTTGGACAATCGAGACCAAGTACTACAAGGCCGAGCTTGCGCTCCAC
CTTGCTGCGAAGGCGGGATCTCCTAGTGGCGGGCAACCGAAGCAGGAAAA
GGAATCTTTCCCCTTTTTTGCGCCTGGGAAAGACTTTCAAGGTATAATTG
TTGTTTGGAAGGGCGGCGGTTCCCCCGGTGAGAACGAGATATCGGGGTTG
AAAGAGATTGAACCATGGCTACGGGCCGCAAGTGCTCAAGACAGTTTAAA
GCTTTGCCTGGTCGTTGGCATACTCGACAGCAATAGCAAGGATGCAGAGA
GGCCGTCTGGGCGGGCGCTCGAGGATGATGACGACGACTCAATGCAGCGG
CGGCGCTCCGTCTGGTGCCTGAAGTATGGCTTCGAGTACGTGGAGGTGGA
CTACACGCGGCAGGTTCGGATGTTGCCGAAGGAGTTGCGGGAGAAGGAAG
GGCTGGAGCGTGTCTGCGAGTGCATCGAGGCGACATCTTGGCAGTACATT
GATTGTTGCTCGAGTGGCAGGTCTCTTTGCTGCAGGCCTGGGGAGCCGGA
CGAAAAGGTCTGTGAGCAGCCGCAAGATAAAGCGGGCTCCTTGGCCTCAG
ATCAGAATGACGTGAACTTGACCTGCCGGACACGCCTTGGCCATAGCAAC
GTTGCCGAGGGGACTCAAGATAAGCATGGAGAAGAGTGGGAAGATGACGC
GGGATTAGAACGGCTATTTGCGAAGTTTCATGCTGAGAGGGAGAGAGCTC
ACAGTGGTCAGTACGATGACGAGCAGCGAAGAGCGAGGGCAGCGGAGATG
GCCCTTCAATTCGCTCTAAAGCTTGGCATCTTTGAAGATGATGAGTAG

Synonyms

Publications