jgi.p|Nanoce1779_2|576866, mRNA_303 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576866
Unique NamemRNA_303
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1132
Alignment locationscaffold_3:744449..745777 +

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Properties
Property NameValue
TranscriptId576952
TrackFilteredModels2
ProteinId576866
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:744449..745777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576866gene_303Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576866mRNA_303-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_303CDS_303Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_303 ID=mRNA_303|Name=jgi.p|Nanoce1779_2|576866|organism=Nannochloropsis oceanica|type=mRNA|length=1132bp
ACAGGTTTCCTAACTGTCAAGGACTCCAAGCTTACATCTCGTCGTCGTCG
TCAGCGTCATCTCCTCAACTTAAGAACATGCTTCCGCCATCCCTGAGGCG
CGTGGCCGGGCCCCCGCGACAGCTGCTCCGTGCCTTGACGGCTGCTGCAG
CTGCCGGCATACGCCATGCCTCGACGTTGGTGGTGGCTGAGCACTCGGCC
GCCAAGGGCACTTTGAGCGCCAGTACGCTGAGCACCATCACGGCTGCAGG
CCACTTCAAGGGCCCCATCACAGTGCTGGTGGCGGGCGGACAAGGACTGG
ATGCCGTGGCCAAACAGGCTGCTCAAGTGGTGGGCATCAGCAAGGTTTTG
GTTGCTGAACACGCAGCTTACGAGAAGGGCCTGGCAGAGAATGTAAGCCA
AGTCATTGTGGCTGCCCAAAACGCCGGCGGCTACTCCCACATTTTGGCGC
CGTCTTCCATGCGCTCCAAGAACATTATTCCCCGTGTGGCGGCTATGCTC
GACACGCAACCGGTGACCGATGTCATTCAAATTGTCGACGAGGCGACATT
TGTCCGACCGATGTATGCCGGCAATGCCATCGCGACAGTCAAAACCTCGG
AGGCCCTCAAACTCCTCACTGTTCGTGCCACTGCATTTGACAAGGCACCT
GCCACGGGAGGGAGCGCCATTATGGAGGCAGCACCAGAGGTTGCTGCTCC
GGATGCTGGGTTGAGTACGTTTGTGAGCGAGAGTGTGAGCCAGTCTGCTC
GGCCAGAGCTGGCGTCGGCACGAGTGGTGGTCTCGGGCGGGCGAGGGCTG
AAGACGAAAGAAAATTTCGCAATGTTGGAGACGTTGGCAGACAAGCTCAA
GGGCGCAGTCGGTGCCTCGCGCGCAGCTGTCGATGAATACCACATGCCTA
ACGAGCTGCAAGTCGGTCAAACCGGTAAGGTGGTTGCCCCTGACCTCTAC
GTGGCTGTAGGGATCTCAGGTGCAATTCAGCATCTGTCTGGCATGAAGGA
CAGCAAGGTAATCGTGGCCATCAATAAGGATAAGGAGGCCCCCATTTTCC
AAGTTGCGGACTATGGGTTGGTCGCTGATTTGTTTCAGGCGGTGCCAGAG
TTGACGGAAAAGGTCTAATGACGTGAAGAGGG
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protein sequence of jgi.p|Nanoce1779_2|576866

>mRNA_303-protein ID=mRNA_303-protein|Name=jgi.p|Nanoce1779_2|576866|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MLPPSLRRVAGPPRQLLRALTAAAAAGIRHASTLVVAEHSAAKGTLSAST
LSTITAAGHFKGPITVLVAGGQGLDAVAKQAAQVVGISKVLVAEHAAYEK
GLAENVSQVIVAAQNAGGYSHILAPSSMRSKNIIPRVAAMLDTQPVTDVI
QIVDEATFVRPMYAGNAIATVKTSEALKLLTVRATAFDKAPATGGSAIME
AAPEVAAPDAGLSTFVSESVSQSARPELASARVVVSGGRGLKTKENFAML
ETLADKLKGAVGASRAAVDEYHMPNELQVGQTGKVVAPDLYVAVGISGAI
QHLSGMKDSKVIVAINKDKEAPIFQVADYGLVADLFQAVPELTEKV*
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mRNA from alignment at scaffold_3:744449..745777+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_303 ID=mRNA_303|Name=jgi.p|Nanoce1779_2|576866|organism=Nannochloropsis oceanica|type=mRNA|length=1329bp|location=Sequence derived from alignment at scaffold_3:744449..745777+ (Nannochloropsis oceanica)
ACAGGTTTCCTAACTGTCAAGGACTCCAAGCTTACATCTCGTCGTCGTCG
TCAGCGTCATCTCCTCAACTTAAGAACATGCTTCCGCCATCCCTGAGGCG
CGTGGCCGGGCCCCCGCGACAGCTGCTCCGTGCCTTGACGGCTGCTGCAG
CTGCCGGCATACGCCATGCCTCGACGTTGGTGGTGGCTGAGCACTCGGCC
GCCAAGGGCACTTTGAGCGCCAGTACGCTGAGCACCATCACGGCTGCAGG
CCACTTCAAGGGCCCCATCACAGTGCTGGTGGCGGGCGGACAAGGACTGG
ATGCCGTGGCCAAACAGGCTGCTCAAGTGGTGGGCATCAGCAAGGTTTTG
GTTGCTGAACACGCAGCTTACGAGAAGGGCCTGGCAGAGAATGTAAGCCA
AGTCATTGTGGCTGCCCAAAACGCCGGCGGCTACTCCCACATTTTGGCGC
CGTCTTCCATGCGCTCCAAGAACATTATTCCCCGTGTGGCGGCTATGCTC
GACACGCAACCGGTGACCGATGTCATTCAAATTGTCGACGAGGCGACATT
TGTCCGACCGATGTATGCCGGCAATGCCATCGCGACAGTCAAAACCTCGG
AGGCCCTCAAACTCCTCACTGTTCGTGCCACTGCATTTGACAAGGCACCT
GCCACGGGAGGGAGCGCCATTATGGAGGCAGCACCAGAGGTTGCTGCTCC
GGATGCTGGGTTGAGTACGTTTGTGAGCGAGAGTGTGAGCCAGTCTGCTC
GGCCAGAGCTGGCGTCGGCACGAGTGGTGGTCTCGGGCGGGCGAGGGCTG
AAGACGAAAGAAAATTTCGCAATGTTGGAGACGTTGGCAGACAAGCTCAA
GGGCGCAGGTATGTATAGACAGTCTTTGGGTCGTGTACTTTGTCGTCCGC
GTGTATCACGATTGGAATCCTGTGTTGATCTCGACGTGTGCAAGGCACGC
CCATTGCTCTGAACTCTTCCCTGTCCTCCTTCTGCGGCTCTTCCCCTCCA
CATAAATACCTTCACCACTAATGTCCCTTCTCCCCTACCTCTCCTCGCCC
AACAGTCGGTGCCTCGCGCGCAGCTGTCGATGAATACCACATGCCTAACG
AGCTGCAAGTCGGTCAAACCGGTAAGGTGGTTGCCCCTGACCTCTACGTG
GCTGTAGGGATCTCAGGTGCAATTCAGCATCTGTCTGGCATGAAGGACAG
CAAGGTAATCGTGGCCATCAATAAGGATAAGGAGGCCCCCATTTTCCAAG
TTGCGGACTATGGGTTGGTCGCTGATTTGTTTCAGGCGGTGCCAGAGTTG
ACGGAAAAGGTCTAATGACGTGAAGAGGG
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Coding sequence (CDS) from alignment at scaffold_3:744449..745777+

>mRNA_303 ID=mRNA_303|Name=jgi.p|Nanoce1779_2|576866|organism=Nannochloropsis oceanica|type=CDS|length=2082bp|location=Sequence derived from alignment at scaffold_3:744449..745777+ (Nannochloropsis oceanica)
ATGCTTCCGCCATCCCTGAGGCGCGTGGCCGGGCCCCCGCGACAGCTGCT
CCGTGCCTTGACGGCTGCTGCAGCTGCCGGCATACGCCATGCCTCGACGT
TGGTGGTGGCTGAGCACTCGGCCGCCAAGGGCACTTTGAGCGCCAGTACG
CTGAGCACCATCACGGCTGCAGGCCACTTCAAGGGCCCCATCACAGTGCT
GGTGGCGGGCGGACAAGGACTGGATGCCGTGGCCAAACAGGCTGCTCAAG
TGGTGGGCATCAGCAAGGTTTTGGTTGCTGAACACGCAGCTTACGAGAAG
GGCCTGGCAGAGAATGTAAGCCAAGTCATTGTGGCTGCCCAAAACGCCGG
CGGCTACTCCCACATTTTGGCGCCGTCTTCCATGCGCTCCAAGAACATTA
TTCCCCGTGTGGCGGCTATGCTCGACACGCAACCGGTGACCGATGTCATT
CAAATTGTCGACGAGGCGACATTTGTCCGACCGATGTATGCCGGCAATGC
CATCGCGACAGTCAAAACCTCGGAGGCCCTCAAACTCCTCACTGTTCGTG
CCACTGCATTTGACAAGGCACCTGCCACGGGAGGGAGCGCCATTATGGAG
GCAGCACCAGAGGTTGCTGCTCCGGATGCTGGGTTGAGTACGTTTGTGAG
CGAGAGTGTGAGCCAGTCTGCTCGGCCAGAGCTGGCGTCGGCACGAGTGG
TGGTCTCGGGCGGGCGAGGGCTGAAGACGAAAGAAAATTTCGCAATGTTG
GAGACGTTGGCAGACAAGCTCAAGGGCGCAGTCGGTGCCTCGCGCGCAGC
TGTCGATGAATACCACATGCCTAACGAGCTGCAAGTCGGTCAAACCGGTA
AGGTGGTTGCCCCTGACCTCTACGTGGCTGTAGGGATCTCAGGTGCAATT
CAGCATCTGTCTGGCATGAAGGACAGCAAGGTAATCGTGGCCATCAATAA
GGATAAGGAGGCCCCCATTTTCCAAGTTGCGGACTATGGGTTGGTCGCTG
ATTTGTTTCAGGCGGTGCCAGAGTTGACGGAAAAGGTCTAAATGCTTCCG
CCATCCCTGAGGCGCGTGGCCGGGCCCCCGCGACAGCTGCTCCGTGCCTT
GACGGCTGCTGCAGCTGCCGGCATACGCCATGCCTCGACGTTGGTGGTGG
CTGAGCACTCGGCCGCCAAGGGCACTTTGAGCGCCAGTACGCTGAGCACC
ATCACGGCTGCAGGCCACTTCAAGGGCCCCATCACAGTGCTGGTGGCGGG
CGGACAAGGACTGGATGCCGTGGCCAAACAGGCTGCTCAAGTGGTGGGCA
TCAGCAAGGTTTTGGTTGCTGAACACGCAGCTTACGAGAAGGGCCTGGCA
GAGAATGTAAGCCAAGTCATTGTGGCTGCCCAAAACGCCGGCGGCTACTC
CCACATTTTGGCGCCGTCTTCCATGCGCTCCAAGAACATTATTCCCCGTG
TGGCGGCTATGCTCGACACGCAACCGGTGACCGATGTCATTCAAATTGTC
GACGAGGCGACATTTGTCCGACCGATGTATGCCGGCAATGCCATCGCGAC
AGTCAAAACCTCGGAGGCCCTCAAACTCCTCACTGTTCGTGCCACTGCAT
TTGACAAGGCACCTGCCACGGGAGGGAGCGCCATTATGGAGGCAGCACCA
GAGGTTGCTGCTCCGGATGCTGGGTTGAGTACGTTTGTGAGCGAGAGTGT
GAGCCAGTCTGCTCGGCCAGAGCTGGCGTCGGCACGAGTGGTGGTCTCGG
GCGGGCGAGGGCTGAAGACGAAAGAAAATTTCGCAATGTTGGAGACGTTG
GCAGACAAGCTCAAGGGCGCAGTCGGTGCCTCGCGCGCAGCTGTCGATGA
ATACCACATGCCTAACGAGCTGCAAGTCGGTCAAACCGGTAAGGTGGTTG
CCCCTGACCTCTACGTGGCTGTAGGGATCTCAGGTGCAATTCAGCATCTG
TCTGGCATGAAGGACAGCAAGGTAATCGTGGCCATCAATAAGGATAAGGA
GGCCCCCATTTTCCAAGTTGCGGACTATGGGTTGGTCGCTGATTTGTTTC
AGGCGGTGCCAGAGTTGACGGAAAAGGTCTAA
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Synonyms
Publications