jgi.p|Nanoce1779_2|584257, mRNA_3029 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584257
Unique NamemRNA_3029
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length654
Alignment locationscaffold_7:491145..492248 -

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Properties
Property NameValue
TranscriptId584343
TrackFilteredModels2
ProteinId584257
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:491145..492248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584257gene_3029Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584257mRNA_3029-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3029CDS_3029Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3029 ID=mRNA_3029|Name=jgi.p|Nanoce1779_2|584257|organism=Nannochloropsis oceanica|type=mRNA|length=654bp
AACAACAGAGGTCACTATTACCGTCACCGCAAGAATGAAACTCTGCGTGC
TCCTTCTGATCGCATGCGCCTCATCTGCACTCGCTTTCCTACCCTATACG
CCAAGAGGCATCGCAGCTCGTTCTGCAATGCGGGTCGCTCCGCTATTCGG
GCACCAGGTGACGATCGAGATGCTGGACGGTAAGACGCACACGATTAACG
TGGAATCTTATAAGTCGGTGCTAGAGGCAGCCCTAGACGAGGGTATCGAG
CTGCCCCACGATTGCAAGCTAGGCGCCTGCTTGGCCTGCGCAGCGAAGGT
TCTTTCGGGTACGGTAGATCAGACGGGCTCGACACTGGACGACACGGTTA
TCGAGCGGGGCTATGCACTCACCTGCTGCGCCTACCCTCAGACAGACGTC
GTTATCCGCTCCATCCCTGAGGACGAGCTGATCGACGAGCAGTTTGCTCC
TCTCTAAAGCGTTCGAGTGATTGAAGGGGATCATAAACGGTCAAGATAAA
ATAAAATGAACAAAGAAAGCATTGTGTGACACTCTGTACGATAGTGTGGC
AGGATGCTGGGCTTAAAGGTAGATAAGTACTACACGTGAAGGCAGGTACC
ACACACCGAGAGGAAAGTCACCATATGCGCATATTATACAATTCTTCTCG
AGAT
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protein sequence of jgi.p|Nanoce1779_2|584257

>mRNA_3029-protein ID=mRNA_3029-protein|Name=jgi.p|Nanoce1779_2|584257|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MKLCVLLLIACASSALAFLPYTPRGIAARSAMRVAPLFGHQVTIEMLDGK
THTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGST
LDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFAPL*
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mRNA from alignment at scaffold_7:491145..492248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3029 ID=mRNA_3029|Name=jgi.p|Nanoce1779_2|584257|organism=Nannochloropsis oceanica|type=mRNA|length=1104bp|location=Sequence derived from alignment at scaffold_7:491145..492248- (Nannochloropsis oceanica)
AACAACAGAGGTCACTATTACCGTCACCGCAAGAATGAAACTCTGCGTGC
TCCTTCTGATCGCATGCGCCTCATCTGCACTCGGTAAGTACGTTGACTGG
AAAGATATGCGTTGCACTGGGAGCCGGGCTCCGCATGGCATCTGTTTGAT
CCAAAGAGTGGGTAGGGTTTGGCTTCATTGTTTGAGGAGTGTATAGGACG
GTAACACTTCGGTAGATATTGTTCATAGGCAGGTTACAGAGAGCCAAGCC
TCGTTTCAGGGCACGAGATTTTGGCAGTGGTTTGGGACGTTGCAGCACGA
CCCATTTGTTTCAAGAAGGACACTACCCCAACTCGACTGACGTGACTCTT
TACATCCGCCCCACGTCCCGTATAATAGCTTTCCTACCCTATACGCCAAG
AGGCATCGCAGCTCGTTCTGCAATGCGGGTCGCTCCGCTATTCGGGCACC
AGGTGACGATCGAGGTAAATTGCAATGTGGGGGGAGGTTTTAAGGAGGGT
AGTTCATCTTGAATCAATAGATCAATTTACCAATCAATCAATCATCTTGG
ACACCATGCACAGCCTGCTTTTAATTCATTTATATCTTTTATTCTTATTT
AACTCCTCCCCTTTGTCAGATGCTGGACGGTAAGACGCACACGATTAACG
TGGAATCTTATAAGTCGGTGCTAGAGGCAGCCCTAGACGAGGGTATCGAG
CTGCCCCACGATTGCAAGCTAGGCGCCTGCTTGGCCTGCGCAGCGAAGGT
TCTTTCGGGTACGGTAGATCAGACGGGCTCGACACTGGACGACACGGTTA
TCGAGCGGGGCTATGCACTCACCTGCTGCGCCTACCCTCAGACAGACGTC
GTTATCCGCTCCATCCCTGAGGACGAGCTGATCGACGAGCAGTTTGCTCC
TCTCTAAAGCGTTCGAGTGATTGAAGGGGATCATAAACGGTCAAGATAAA
ATAAAATGAACAAAGAAAGCATTGTGTGACACTCTGTACGATAGTGTGGC
AGGATGCTGGGCTTAAAGGTAGATAAGTACTACACGTGAAGGCAGGTACC
ACACACCGAGAGGAAAGTCACCATATGCGCATATTATACAATTCTTCTCG
AGAT
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Coding sequence (CDS) from alignment at scaffold_7:491145..492248-

>mRNA_3029 ID=mRNA_3029|Name=jgi.p|Nanoce1779_2|584257|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at scaffold_7:491145..492248- (Nannochloropsis oceanica)
ATGCTGGACGGTAAGACGCACACGATTAACGTGGAATCTTATAAGTCGGT
GCTAGAGGCAGCCCTAGACGAGGGTATCGAGCTGCCCCACGATTGCAAGC
TAGGCGCCTGCTTGGCCTGCGCAGCGAAGGTTCTTTCGGGTACGGTAGAT
CAGACGGGCTCGACACTGGACGACACGGTTATCGAGCGGGGCTATGCACT
CACCTGCTGCGCCTACCCTCAGACAGACGTCGTTATCCGCTCCATCCCTG
AGGACGAGCTGATCGACGAGCAGTTTGCTCCTCTCTAACTTTCCTACCCT
ATACGCCAAGAGGCATCGCAGCTCGTTCTGCAATGCGGGTCGCTCCGCTA
TTCGGGCACCAGGTGACGATCGAGATGAAACTCTGCGTGCTCCTTCTGAT
CGCATGCGCCTCATCTGCACTCGATGCTGGACGGTAAGACGCACACGATT
AACGTGGAATCTTATAAGTCGGTGCTAGAGGCAGCCCTAGACGAGGGTAT
CGAGCTGCCCCACGATTGCAAGCTAGGCGCCTGCTTGGCCTGCGCAGCGA
AGGTTCTTTCGGGTACGGTAGATCAGACGGGCTCGACACTGGACGACACG
GTTATCGAGCGGGGCTATGCACTCACCTGCTGCGCCTACCCTCAGACAGA
CGTCGTTATCCGCTCCATCCCTGAGGACGAGCTGATCGACGAGCAGTTTG
CTCCTCTCTAACTTTCCTACCCTATACGCCAAGAGGCATCGCAGCTCGTT
CTGCAATGCGGGTCGCTCCGCTATTCGGGCACCAGGTGACGATCGAGATG
AAACTCTGCGTGCTCCTTCTGATCGCATGCGCCTCATCTGCACTCGATGC
TGGACGGTAAGACGCACACGATTAACGTGGAATCTTATAAGTCGGTGCTA
GAGGCAGCCCTAGACGAGGGTATCGAGCTGCCCCACGATTGCAAGCTAGG
CGCCTGCTTGGCCTGCGCAGCGAAGGTTCTTTCGGGTACGGTAGATCAGA
CGGGCTCGACACTGGACGACACGGTTATCGAGCGGGGCTATGCACTCACC
TGCTGCGCCTACCCTCAGACAGACGTCGTTATCCGCTCCATCCCTGAGGA
CGAGCTGATCGACGAGCAGTTTGCTCCTCTCTAACTTTCCTACCCTATAC
GCCAAGAGGCATCGCAGCTCGTTCTGCAATGCGGGTCGCTCCGCTATTCG
GGCACCAGGTGACGATCGAGATGAAACTCTGCGTGCTCCTTCTGATCGCA
TGCGCCTCATCTGCACTCG
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Synonyms
Publications