Properties
| Property Name | Value |
|---|
| TranscriptId | 584336 |
| Track | FilteredModels2 |
| ProteinId | 584250 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:489347..491144 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3028 ID=mRNA_3028|Name=jgi.p|Nanoce1779_2|584250|organism=Nannochloropsis oceanica|type=mRNA|length=1394bp
CAACAGGAGGTGCAGTCGTACCCACGACGTAAAATCGTTGCCGTCTGCTT
GCTACACCAAGAGCAGCACTCTTCAAGCGTCATGAGAGCTGTTGCTCGCC
ATGCACCGTGTCGAAGTCTGCCTTATGGACAGATCCTCACCCGGCCAGCA
CCAGCGGCAGCAACATTACCAGAAGCAGCATTACCGCGTAGTTGCAAGGC
CAGGGGCTTGGCTTCTTATTCGTCCGCACGCCTGGAAAACCTGCGCAAGC
AGCTGGAAGAAGAGGACGCCGCGGGGATTGCCATGTCCCTTATCCCACCT
ACCATTCATGTGCCAGAGACTGTCAGTTCCGACGATGTTGCCCCTGCTCC
ACGACGACAAAAGCGCATGGAACCGAAGCCTAGTTGGCTGAAGGCCGTGC
CCGCCGAAGGCGAGAACTACCTCCGGTTGAAGAGTACGGTCCGGAAGCTT
AAGCTGGCAACGGTGTGCGAGGAGGCACGCTGCCCAAACATCGGGGAGTG
TTGGGGAGGTGGTAAGGAGGGCACGGCGACGGCGACGATCATGATTATGG
GCGACACGTGCACGCGAGGCTGCAGCTTTTGCGCCGTTAAGACAAGCCGA
ACACCAGCGGCACTGGACCCATTGGAGCCGGAGCACGTTGCACAAGCCAT
AACAGAGTGGGGCTTGGACTACGTCGTCTTGACCAGCGTGGATCGGGACG
ACTTGGAAGACCAAGGTTCAGAGCATTTCGCCCAAACCGTTCGAGGGCTC
AAGACCCGCAAGCCCTCGCTGCTCGTGGAATGCCTGACACCTGATTTTCG
CGGCCAAGCTAATCTCATCGAGCATGTGGCCACCTCGGGCCTGGACGTAT
ATGCACACAACCTTGAGACGGTGGAGCGGATGCAGCGCCGCGTGCGGGAC
CACCGGGCAGGCTACTCCCAATCACTCTTCGTTCTGGAGCACGCCAAGAA
GTGTGAGCCGACCCTCTTGACCAAAACCTCGCTCATGCTCGGCGTGGGGG
AACGGCCCGAGGACATCCGTGCCACTCTGCGAGATCTGAGGACAGCAGGC
GTGGACGTCGTCACCTTCGGACAGTACCTGCGGCCTACCAAGCGACACAT
GCCTGTTAAAGCTTTCGTCACACCGGAGCGATTCCAGGAGTGGCAGGTGG
AGGCGGAGGGGCTGGGGTTCAAGTATGTCGCCTCGGGACCGCTCGTCCGC
TCTTCCTACAAAGCGGGGGAGTTTTTTTTGAAGGGGCTTCTCAAGAAGCA
AGAAGAAAGATGAAGACGGCGCCCTCCCAGAAGAGGAGCAGTGGCAAAAG
GAGCAGGAGCGTGTTGGCAAAATGTAAACAAATCAAGACTACGAAATAAG
GAATCATAGGTGACATACAAAAACACAACCACACGGTGTATCAT back to topprotein sequence of jgi.p|Nanoce1779_2|584250 >mRNA_3028-protein ID=mRNA_3028-protein|Name=jgi.p|Nanoce1779_2|584250|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MRAVARHAPCRSLPYGQILTRPAPAAATLPEAALPRSCKARGLASYSSAR
LENLRKQLEEEDAAGIAMSLIPPTIHVPETVSSDDVAPAPRRQKRMEPKP
SWLKAVPAEGENYLRLKSTVRKLKLATVCEEARCPNIGECWGGGKEGTAT
ATIMIMGDTCTRGCSFCAVKTSRTPAALDPLEPEHVAQAITEWGLDYVVL
TSVDRDDLEDQGSEHFAQTVRGLKTRKPSLLVECLTPDFRGQANLIEHVA
TSGLDVYAHNLETVERMQRRVRDHRAGYSQSLFVLEHAKKCEPTLLTKTS
LMLGVGERPEDIRATLRDLRTAGVDVVTFGQYLRPTKRHMPVKAFVTPER
FQEWQVEAEGLGFKYVASGPLVRSSYKAGEFFLKGLLKKQEER* back to topmRNA from alignment at scaffold_7:489347..491144+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3028 ID=mRNA_3028|Name=jgi.p|Nanoce1779_2|584250|organism=Nannochloropsis oceanica|type=mRNA|length=1798bp|location=Sequence derived from alignment at scaffold_7:489347..491144+ (Nannochloropsis oceanica)
CAACAGGAGGTGCAGTCGTACCCACGACGTAAAATCGTTGCCGTCTGCTT
GCTACACCAAGAGCAGCACTCTTCAAGCGTCATGAGAGCTGTTGCTCGCC
ATGCACCGTGTCGAAGTCTGCCTTATGGACAGATCCTCACCCGGCCAGCA
CCAGCGGCAGCAACATTACCAGAAGCAGCATTACCGCGTAGTTGCAAGGC
CAGGGGCTTGGCTTCTTATTCGTCCGCACGCCTGGAAAACCTGCGCAAGC
AGCTGGAAGAAGAGGACGCCGCGGGGATTGCCATGTCCCTTATCCCACCT
ACCATTCATGTGCCAGAGACTGTCAGTTCCGACGATGTTGCCCCTGCTCC
ACGACGACAAAAGCGCATGGAACCGAAGCCTAGTACGTGATGGGATCATT
GTGGTTGCACAGCTTGATGGCATGGTGCTGACCCTCGATGTCCCCCCCCC
AACCCCTCCGACCTCCTCACTTCAGGTTGGCTGAAGGCCGTGCCCGCCGA
AGGCGAGAACTACCTCCGGTTGAAGAGTACGGTACGTATTGATGAATATC
GAATTGAGTATGTCATTATACCCTGGCTTCTCAAAATCGCCAATCCCCTT
CTCGTATTCTCATCTCCCATTCTATCCCGCGCCGCCTAGGTCCGGAAGCT
TAAGCTGGCAACGGTGTGCGAGGAGGCACGCTGCCCAAACATCGGGGAGT
GTTGGGGAGGTGGTAAGGAGGGCACGGCGACGGCGACGATCATGATTATG
GGCGACACGTGCACGCGAGGCTGCAGCTTTTGCGCCGTTAAGACAAGCCG
AACACCAGCGGCACTGGGTACGTAGATGAAGGCGTATAAATGGACAGAGA
CGAAGAAACGACGGATTTGTTTACCAAATTGCCTTGTTTCCTCATTTTAC
TTCGAATTGACACGATGCAGACCCATTGGAGCCGGAGCACGTTGCACAAG
CCATAACAGAGTGGGGCTTGGACTACGTCGTCTTGACCAGGTAAGGATAC
GCCGACTCTCCATTTCTTTTCACGACACCACCCCACCTCCATGTCTACAA
AACCAACCATTGTCTTTCATTGCAATTGTCATCCTCACAGCGTGGATCGG
GACGACTTGGAAGACCAAGGTTCAGAGCATTTCGCCCAAACCGTTCGAGG
GCTCAAGACCCGCAAGCCCTCGCTGCTCGTGGAATGCCTGACACCTGATT
TTCGCGGCCAAGCTAATCTCATCGAGCATGTGGCCACCTCGGGCCTGGAC
GTATATGCACACAACCTTGAGACGGTGGAGCGGATGCAGCGCCGCGTGCG
GGACCACCGGGCAGGCTACTCCCAATCACTCTTCGTTCTGGAGCACGCCA
AGAAGTGTGAGCCGACCCTCTTGACCAAAACCTCGCTCATGCTCGGCGTG
GGGGAACGGCCCGAGGACATCCGTGCCACTCTGCGAGATCTGAGGACAGC
AGGCGTGGACGTCGTCACCTTCGGACAGTACCTGCGGCCTACCAAGCGAC
ACATGCCTGTTAAAGCTTTCGTCACACCGGAGCGATTCCAGGAGTGGCAG
GTGGAGGCGGAGGGGCTGGGGTTCAAGTATGTCGCCTCGGGACCGCTCGT
CCGCTCTTCCTACAAAGCGGGGGAGTTTTTTTTGAAGGGGCTTCTCAAGA
AGCAAGAAGAAAGATGAAGACGGCGCCCTCCCAGAAGAGGAGCAGTGGCA
AAAGGAGCAGGAGCGTGTTGGCAAAATGTAAACAAATCAAGACTACGAAA
TAAGGAATCATAGGTGACATACAAAAACACAACCACACGGTGTATCAT back to topCoding sequence (CDS) from alignment at scaffold_7:489347..491144+ >mRNA_3028 ID=mRNA_3028|Name=jgi.p|Nanoce1779_2|584250|organism=Nannochloropsis oceanica|type=CDS|length=5910bp|location=Sequence derived from alignment at scaffold_7:489347..491144+ (Nannochloropsis oceanica)
ATGAGAGCTGTTGCTCGCCATGCACCGTGTCGAAGTCTGCCTTATGGACA
GATCCTCACCCGGCCAGCACCAGCGGCAGCAACATTACCAGAAGCAGCAT
TACCGCGTAGTTGCAAGGCCAGGGGCTTGGCTTCTTATTCGTCCGCACGC
CTGGAAAACCTGCGCAAGCAGCTGGAAGAAGAGGACGCCGCGGGGATTGC
CATGTCCCTTATCCCACCTACCATTCATGTGCCAGAGACTGTCAGTTCCG
ACGATGTTGCCCCTGCTCCACGACGACAAAAGCGCATGGAACCGAAGCCT
AGTTGGCTGAAGGCCGTGCCCGCCGAAGGCGAGAACTACCTCCGGTTGAA
GAGTACGGTCCGGAAGCTTAAGCTGGCAACGGTGTGCGAGGAGGCACGCT
GCCCAAACATCGGGGAGTGTTGGGGAGGTGGTAAGGAGGGCACGGCGACG
GCGACGATCATGATTATGGGCGACACGTGCACGCGAGGCTGCAGCTTTTG
CGCCGTTAAGACAAGCCGAACACCAGCGGCACTGGACCCATTGGAGCCGG
AGCACGTTGCACAAGCCATAACAGAGTGGGGCTTGGACTACGTCGTCTTG
ACCAGCGTGGATCGGGACGACTTGGAAGACCAAGGTTCAGAGCATTTCGC
CCAAACCGTTCGAGGGCTCAAGACCCGCAAGCCCTCGCTGCTCGTGGAAT
GCCTGACACCTGATTTTCGCGGCCAAGCTAATCTCATCGAGCATGTGGCC
ACCTCGGGCCTGGACGTATATGCACACAACCTTGAGACGGTGGAGCGGAT
GCAGCGCCGCGTGCGGGACCACCGGGCAGGCTACTCCCAATCACTCTTCG
TTCTGGAGCACGCCAAGAAGTGTGAGCCGACCCTCTTGACCAAAACCTCG
CTCATGCTCGGCGTGGGGGAACGGCCCGAGGACATCCGTGCCACTCTGCG
AGATCTGAGGACAGCAGGCGTGGACGTCGTCACCTTCGGACAGTACCTGC
GGCCTACCAAGCGACACATGCCTGTTAAAGCTTTCGTCACACCGGAGCGA
TTCCAGGAGTGGCAGGTGGAGGCGGAGGGGCTGGGGTTCAAGTATGTCGC
CTCGGGACCGCTCGTCCGCTCTTCCTACAAAGCGGGGGAGTTTTTTTTGA
AGGGGCTTCTCAAGAAGCAAGAAGAAAGATGAATGAGAGCTGTTGCTCGC
CATGCACCGTGTCGAAGTCTGCCTTATGGACAGATCCTCACCCGGCCAGC
ACCAGCGGCAGCAACATTACCAGAAGCAGCATTACCGCGTAGTTGCAAGG
CCAGGGGCTTGGCTTCTTATTCGTCCGCACGCCTGGAAAACCTGCGCAAG
CAGCTGGAAGAAGAGGACGCCGCGGGGATTGCCATGTCCCTTATCCCACC
TACCATTCATGTGCCAGAGACTGTCAGTTCCGACGATGTTGCCCCTGCTC
CACGACGACAAAAGCGCATGGAACCGAAGCCTAGTTGGCTGAAGGCCGTG
CCCGCCGAAGGCGAGAACTACCTCCGGTTGAAGAGTACGGTCCGGAAGCT
TAAGCTGGCAACGGTGTGCGAGGAGGCACGCTGCCCAAACATCGGGGAGT
GTTGGGGAGGTGGTAAGGAGGGCACGGCGACGGCGACGATCATGATTATG
GGCGACACGTGCACGCGAGGCTGCAGCTTTTGCGCCGTTAAGACAAGCCG
AACACCAGCGGCACTGGACCCATTGGAGCCGGAGCACGTTGCACAAGCCA
TAACAGAGTGGGGCTTGGACTACGTCGTCTTGACCAGCGTGGATCGGGAC
GACTTGGAAGACCAAGGTTCAGAGCATTTCGCCCAAACCGTTCGAGGGCT
CAAGACCCGCAAGCCCTCGCTGCTCGTGGAATGCCTGACACCTGATTTTC
GCGGCCAAGCTAATCTCATCGAGCATGTGGCCACCTCGGGCCTGGACGTA
TATGCACACAACCTTGAGACGGTGGAGCGGATGCAGCGCCGCGTGCGGGA
CCACCGGGCAGGCTACTCCCAATCACTCTTCGTTCTGGAGCACGCCAAGA
AGTGTGAGCCGACCCTCTTGACCAAAACCTCGCTCATGCTCGGCGTGGGG
GAACGGCCCGAGGACATCCGTGCCACTCTGCGAGATCTGAGGACAGCAGG
CGTGGACGTCGTCACCTTCGGACAGTACCTGCGGCCTACCAAGCGACACA
TGCCTGTTAAAGCTTTCGTCACACCGGAGCGATTCCAGGAGTGGCAGGTG
GAGGCGGAGGGGCTGGGGTTCAAGTATGTCGCCTCGGGACCGCTCGTCCG
CTCTTCCTACAAAGCGGGGGAGTTTTTTTTGAAGGGGCTTCTCAAGAAGC
AAGAAGAAAGATGAATGAGAGCTGTTGCTCGCCATGCACCGTGTCGAAGT
CTGCCTTATGGACAGATCCTCACCCGGCCAGCACCAGCGGCAGCAACATT
ACCAGAAGCAGCATTACCGCGTAGTTGCAAGGCCAGGGGCTTGGCTTCTT
ATTCGTCCGCACGCCTGGAAAACCTGCGCAAGCAGCTGGAAGAAGAGGAC
GCCGCGGGGATTGCCATGTCCCTTATCCCACCTACCATTCATGTGCCAGA
GACTGTCAGTTCCGACGATGTTGCCCCTGCTCCACGACGACAAAAGCGCA
TGGAACCGAAGCCTAGTTGGCTGAAGGCCGTGCCCGCCGAAGGCGAGAAC
TACCTCCGGTTGAAGAGTACGGTCCGGAAGCTTAAGCTGGCAACGGTGTG
CGAGGAGGCACGCTGCCCAAACATCGGGGAGTGTTGGGGAGGTGGTAAGG
AGGGCACGGCGACGGCGACGATCATGATTATGGGCGACACGTGCACGCGA
GGCTGCAGCTTTTGCGCCGTTAAGACAAGCCGAACACCAGCGGCACTGGA
CCCATTGGAGCCGGAGCACGTTGCACAAGCCATAACAGAGTGGGGCTTGG
ACTACGTCGTCTTGACCAGCGTGGATCGGGACGACTTGGAAGACCAAGGT
TCAGAGCATTTCGCCCAAACCGTTCGAGGGCTCAAGACCCGCAAGCCCTC
GCTGCTCGTGGAATGCCTGACACCTGATTTTCGCGGCCAAGCTAATCTCA
TCGAGCATGTGGCCACCTCGGGCCTGGACGTATATGCACACAACCTTGAG
ACGGTGGAGCGGATGCAGCGCCGCGTGCGGGACCACCGGGCAGGCTACTC
CCAATCACTCTTCGTTCTGGAGCACGCCAAGAAGTGTGAGCCGACCCTCT
TGACCAAAACCTCGCTCATGCTCGGCGTGGGGGAACGGCCCGAGGACATC
CGTGCCACTCTGCGAGATCTGAGGACAGCAGGCGTGGACGTCGTCACCTT
CGGACAGTACCTGCGGCCTACCAAGCGACACATGCCTGTTAAAGCTTTCG
TCACACCGGAGCGATTCCAGGAGTGGCAGGTGGAGGCGGAGGGGCTGGGG
TTCAAGTATGTCGCCTCGGGACCGCTCGTCCGCTCTTCCTACAAAGCGGG
GGAGTTTTTTTTGAAGGGGCTTCTCAAGAAGCAAGAAGAAAGATGAATGA
GAGCTGTTGCTCGCCATGCACCGTGTCGAAGTCTGCCTTATGGACAGATC
CTCACCCGGCCAGCACCAGCGGCAGCAACATTACCAGAAGCAGCATTACC
GCGTAGTTGCAAGGCCAGGGGCTTGGCTTCTTATTCGTCCGCACGCCTGG
AAAACCTGCGCAAGCAGCTGGAAGAAGAGGACGCCGCGGGGATTGCCATG
TCCCTTATCCCACCTACCATTCATGTGCCAGAGACTGTCAGTTCCGACGA
TGTTGCCCCTGCTCCACGACGACAAAAGCGCATGGAACCGAAGCCTAGTT
GGCTGAAGGCCGTGCCCGCCGAAGGCGAGAACTACCTCCGGTTGAAGAGT
ACGGTCCGGAAGCTTAAGCTGGCAACGGTGTGCGAGGAGGCACGCTGCCC
AAACATCGGGGAGTGTTGGGGAGGTGGTAAGGAGGGCACGGCGACGGCGA
CGATCATGATTATGGGCGACACGTGCACGCGAGGCTGCAGCTTTTGCGCC
GTTAAGACAAGCCGAACACCAGCGGCACTGGACCCATTGGAGCCGGAGCA
CGTTGCACAAGCCATAACAGAGTGGGGCTTGGACTACGTCGTCTTGACCA
GCGTGGATCGGGACGACTTGGAAGACCAAGGTTCAGAGCATTTCGCCCAA
ACCGTTCGAGGGCTCAAGACCCGCAAGCCCTCGCTGCTCGTGGAATGCCT
GACACCTGATTTTCGCGGCCAAGCTAATCTCATCGAGCATGTGGCCACCT
CGGGCCTGGACGTATATGCACACAACCTTGAGACGGTGGAGCGGATGCAG
CGCCGCGTGCGGGACCACCGGGCAGGCTACTCCCAATCACTCTTCGTTCT
GGAGCACGCCAAGAAGTGTGAGCCGACCCTCTTGACCAAAACCTCGCTCA
TGCTCGGCGTGGGGGAACGGCCCGAGGACATCCGTGCCACTCTGCGAGAT
CTGAGGACAGCAGGCGTGGACGTCGTCACCTTCGGACAGTACCTGCGGCC
TACCAAGCGACACATGCCTGTTAAAGCTTTCGTCACACCGGAGCGATTCC
AGGAGTGGCAGGTGGAGGCGGAGGGGCTGGGGTTCAAGTATGTCGCCTCG
GGACCGCTCGTCCGCTCTTCCTACAAAGCGGGGGAGTTTTTTTTGAAGGG
GCTTCTCAAGAAGCAAGAAGAAAGATGAATGAGAGCTGTTGCTCGCCATG
CACCGTGTCGAAGTCTGCCTTATGGACAGATCCTCACCCGGCCAGCACCA
GCGGCAGCAACATTACCAGAAGCAGCATTACCGCGTAGTTGCAAGGCCAG
GGGCTTGGCTTCTTATTCGTCCGCACGCCTGGAAAACCTGCGCAAGCAGC
TGGAAGAAGAGGACGCCGCGGGGATTGCCATGTCCCTTATCCCACCTACC
ATTCATGTGCCAGAGACTGTCAGTTCCGACGATGTTGCCCCTGCTCCACG
ACGACAAAAGCGCATGGAACCGAAGCCTAGTTGGCTGAAGGCCGTGCCCG
CCGAAGGCGAGAACTACCTCCGGTTGAAGAGTACGGTCCGGAAGCTTAAG
CTGGCAACGGTGTGCGAGGAGGCACGCTGCCCAAACATCGGGGAGTGTTG
GGGAGGTGGTAAGGAGGGCACGGCGACGGCGACGATCATGATTATGGGCG
ACACGTGCACGCGAGGCTGCAGCTTTTGCGCCGTTAAGACAAGCCGAACA
CCAGCGGCACTGGACCCATTGGAGCCGGAGCACGTTGCACAAGCCATAAC
AGAGTGGGGCTTGGACTACGTCGTCTTGACCAGCGTGGATCGGGACGACT
TGGAAGACCAAGGTTCAGAGCATTTCGCCCAAACCGTTCGAGGGCTCAAG
ACCCGCAAGCCCTCGCTGCTCGTGGAATGCCTGACACCTGATTTTCGCGG
CCAAGCTAATCTCATCGAGCATGTGGCCACCTCGGGCCTGGACGTATATG
CACACAACCTTGAGACGGTGGAGCGGATGCAGCGCCGCGTGCGGGACCAC
CGGGCAGGCTACTCCCAATCACTCTTCGTTCTGGAGCACGCCAAGAAGTG
TGAGCCGACCCTCTTGACCAAAACCTCGCTCATGCTCGGCGTGGGGGAAC
GGCCCGAGGACATCCGTGCCACTCTGCGAGATCTGAGGACAGCAGGCGTG
GACGTCGTCACCTTCGGACAGTACCTGCGGCCTACCAAGCGACACATGCC
TGTTAAAGCTTTCGTCACACCGGAGCGATTCCAGGAGTGGCAGGTGGAGG
CGGAGGGGCTGGGGTTCAAGTATGTCGCCTCGGGACCGCTCGTCCGCTCT
TCCTACAAAGCGGGGGAGTTTTTTTTGAAGGGGCTTCTCAAGAAGCAAGA
AGAAAGATGA back to top
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