Properties
| Property Name | Value |
|---|
| TranscriptId | 584314 |
| Track | FilteredModels2 |
| ProteinId | 584228 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:478824..480163 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3023 ID=mRNA_3023|Name=jgi.p|Nanoce1779_2|584228|organism=Nannochloropsis oceanica|type=mRNA|length=1340bp
CAGCAGTATGGAGGGCCGTCGTGCTCGCCGGAGCATCGACTCGCAGCTCC
AGACCGCATCGTCACTGTGCACTGTGGGTGGGCATTGTGCCCGTGTCCTG
ACTATACCAGCTCCTCACTGGGACGCTAAGCCCTTTCCAAATGTATTTGG
AGGGTCCTTTGACTATGTGGAGGTCCCTGTGGTGCGATCTTGTCTTCGTC
CAGGTTCAGTCAACCTTTCTGAAGCCTCAAACACCGAGAACGGTGGCCCC
TCCAGCATACAGGTCAACTCTCCACCCCTGCAGTCGTCACCCCTCCTCCC
CGCCCGTATCGCGGCGTCCTTGGAGACCAACCTATCCCCCTTGATCATGG
CAAAAGTAGAATCGCTGCTTGACCCGCCGCCCCTGAAGGCTACAGTGGTA
ATCCTGGAAGACCTGAGCATGAATTTTGGAGAAAGCGACATCTGTTTGTC
GCTTACAGGTACTGTCCAGGTCACATCTTATGCTGGCGGCCCTGCTGCGT
CAAAGCAGCCTCTCGAAATAGGCGTCGAGCTTGTCGATGCCGCGTCCCAA
ATCGAAACGATCAAATCGAATGCTGTGGTTCTCCGGCCTTGGGTTTCACC
TATGCGCGCTAATGCTGGACCTATACCTGAGACGTCGTCGCCCTTGGCGT
CATTCTCACCCCCCGTCCCTTCTCCCACGAAATTTATTTGCCGTCTTCCG
TGCACCACGGACAATGTTGCTCTGCCTCTCAACTTGTTGCGGTACACGAC
CAAATCCACTGTTCGGCCGCTGCCTGTCCGCTTGCAACCAAGCAAAATTA
GTGTGGAGGGAGATGTAGCACATATCATCGTCGTGGTGACGAGCAGTTGC
AACCTCTACGTCCCTCTTTCTGCCATGTCCGTGACCGTTGAAGTCCATAT
GCCTGGCTTTGAGCTCGGTCCAGATGTCATAAGTGCCATGCCGACAAGCG
TGAGCTGGACACCACCTTTCTTCCATTGGCTCTGCCCGCCACGCATGGAG
ATGCTACCTGGCCGGTCACACACGTTCCGTGCAAGCCTCTCTATTCAAAA
CAAGCCGTCACCGTCCGATTTTCCACTTGACGACCTCGCGTGCGTGTCTT
CCCCGTCGTCCTCCGCTTATTTTCCTTCTGGCACGGTCTTTCGAGCAAAG
AGTAATGCAGCATTAACCAAGTGCACCGTGCGGCTTATCAAGCTTGACAA
CGGGGCAGTAGAGGGGGTGAATACATCGAGATGCGAGATCCAGCAAGAGG
TCAGAAAGAGATATCGCATTACGGCGCATGCACAAGCAAGGTGAAAATAG
AATGTTGTAAAAAAGAAAGAAGTATATAAGAGCAAGGAGC back to topprotein sequence of jgi.p|Nanoce1779_2|584228 >mRNA_3023-protein ID=mRNA_3023-protein|Name=jgi.p|Nanoce1779_2|584228|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MEGRRARRSIDSQLQTASSLCTVGGHCARVLTIPAPHWDAKPFPNVFGGS
FDYVEVPVVRSCLRPGSVNLSEASNTENGGPSSIQVNSPPLQSSPLLPAR
IAASLETNLSPLIMAKVESLLDPPPLKATVVILEDLSMNFGESDICLSLT
GTVQVTSYAGGPAASKQPLEIGVELVDAASQIETIKSNAVVLRPWVSPMR
ANAGPIPETSSPLASFSPPVPSPTKFICRLPCTTDNVALPLNLLRYTTKS
TVRPLPVRLQPSKISVEGDVAHIIVVVTSSCNLYVPLSAMSVTVEVHMPG
FELGPDVISAMPTSVSWTPPFFHWLCPPRMEMLPGRSHTFRASLSIQNKP
SPSDFPLDDLACVSSPSSSAYFPSGTVFRAKSNAALTKCTVRLIKLDNGA
VEGVNTSRCEIQQEVRKRYRITAHAQAR* back to topmRNA from alignment at scaffold_7:478824..480163+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3023 ID=mRNA_3023|Name=jgi.p|Nanoce1779_2|584228|organism=Nannochloropsis oceanica|type=mRNA|length=1340bp|location=Sequence derived from alignment at scaffold_7:478824..480163+ (Nannochloropsis oceanica)
CAGCAGTATGGAGGGCCGTCGTGCTCGCCGGAGCATCGACTCGCAGCTCC
AGACCGCATCGTCACTGTGCACTGTGGGTGGGCATTGTGCCCGTGTCCTG
ACTATACCAGCTCCTCACTGGGACGCTAAGCCCTTTCCAAATGTATTTGG
AGGGTCCTTTGACTATGTGGAGGTCCCTGTGGTGCGATCTTGTCTTCGTC
CAGGTTCAGTCAACCTTTCTGAAGCCTCAAACACCGAGAACGGTGGCCCC
TCCAGCATACAGGTCAACTCTCCACCCCTGCAGTCGTCACCCCTCCTCCC
CGCCCGTATCGCGGCGTCCTTGGAGACCAACCTATCCCCCTTGATCATGG
CAAAAGTAGAATCGCTGCTTGACCCGCCGCCCCTGAAGGCTACAGTGGTA
ATCCTGGAAGACCTGAGCATGAATTTTGGAGAAAGCGACATCTGTTTGTC
GCTTACAGGTACTGTCCAGGTCACATCTTATGCTGGCGGCCCTGCTGCGT
CAAAGCAGCCTCTCGAAATAGGCGTCGAGCTTGTCGATGCCGCGTCCCAA
ATCGAAACGATCAAATCGAATGCTGTGGTTCTCCGGCCTTGGGTTTCACC
TATGCGCGCTAATGCTGGACCTATACCTGAGACGTCGTCGCCCTTGGCGT
CATTCTCACCCCCCGTCCCTTCTCCCACGAAATTTATTTGCCGTCTTCCG
TGCACCACGGACAATGTTGCTCTGCCTCTCAACTTGTTGCGGTACACGAC
CAAATCCACTGTTCGGCCGCTGCCTGTCCGCTTGCAACCAAGCAAAATTA
GTGTGGAGGGAGATGTAGCACATATCATCGTCGTGGTGACGAGCAGTTGC
AACCTCTACGTCCCTCTTTCTGCCATGTCCGTGACCGTTGAAGTCCATAT
GCCTGGCTTTGAGCTCGGTCCAGATGTCATAAGTGCCATGCCGACAAGCG
TGAGCTGGACACCACCTTTCTTCCATTGGCTCTGCCCGCCACGCATGGAG
ATGCTACCTGGCCGGTCACACACGTTCCGTGCAAGCCTCTCTATTCAAAA
CAAGCCGTCACCGTCCGATTTTCCACTTGACGACCTCGCGTGCGTGTCTT
CCCCGTCGTCCTCCGCTTATTTTCCTTCTGGCACGGTCTTTCGAGCAAAG
AGTAATGCAGCATTAACCAAGTGCACCGTGCGGCTTATCAAGCTTGACAA
CGGGGCAGTAGAGGGGGTGAATACATCGAGATGCGAGATCCAGCAAGAGG
TCAGAAAGAGATATCGCATTACGGCGCATGCACAAGCAAGGTGAAAATAG
AATGTTGTAAAAAAGAAAGAAGTATATAAGAGCAAGGAGC back to topCoding sequence (CDS) from alignment at scaffold_7:478824..480163+ >mRNA_3023 ID=mRNA_3023|Name=jgi.p|Nanoce1779_2|584228|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at scaffold_7:478824..480163+ (Nannochloropsis oceanica)
ATGGAGGGCCGTCGTGCTCGCCGGAGCATCGACTCGCAGCTCCAGACCGC
ATCGTCACTGTGCACTGTGGGTGGGCATTGTGCCCGTGTCCTGACTATAC
CAGCTCCTCACTGGGACGCTAAGCCCTTTCCAAATGTATTTGGAGGGTCC
TTTGACTATGTGGAGGTCCCTGTGGTGCGATCTTGTCTTCGTCCAGGTTC
AGTCAACCTTTCTGAAGCCTCAAACACCGAGAACGGTGGCCCCTCCAGCA
TACAGGTCAACTCTCCACCCCTGCAGTCGTCACCCCTCCTCCCCGCCCGT
ATCGCGGCGTCCTTGGAGACCAACCTATCCCCCTTGATCATGGCAAAAGT
AGAATCGCTGCTTGACCCGCCGCCCCTGAAGGCTACAGTGGTAATCCTGG
AAGACCTGAGCATGAATTTTGGAGAAAGCGACATCTGTTTGTCGCTTACA
GGTACTGTCCAGGTCACATCTTATGCTGGCGGCCCTGCTGCGTCAAAGCA
GCCTCTCGAAATAGGCGTCGAGCTTGTCGATGCCGCGTCCCAAATCGAAA
CGATCAAATCGAATGCTGTGGTTCTCCGGCCTTGGGTTTCACCTATGCGC
GCTAATGCTGGACCTATACCTGAGACGTCGTCGCCCTTGGCGTCATTCTC
ACCCCCCGTCCCTTCTCCCACGAAATTTATTTGCCGTCTTCCGTGCACCA
CGGACAATGTTGCTCTGCCTCTCAACTTGTTGCGGTACACGACCAAATCC
ACTGTTCGGCCGCTGCCTGTCCGCTTGCAACCAAGCAAAATTAGTGTGGA
GGGAGATGTAGCACATATCATCGTCGTGGTGACGAGCAGTTGCAACCTCT
ACGTCCCTCTTTCTGCCATGTCCGTGACCGTTGAAGTCCATATGCCTGGC
TTTGAGCTCGGTCCAGATGTCATAAGTGCCATGCCGACAAGCGTGAGCTG
GACACCACCTTTCTTCCATTGGCTCTGCCCGCCACGCATGGAGATGCTAC
CTGGCCGGTCACACACGTTCCGTGCAAGCCTCTCTATTCAAAACAAGCCG
TCACCGTCCGATTTTCCACTTGACGACCTCGCGTGCGTGTCTTCCCCGTC
GTCCTCCGCTTATTTTCCTTCTGGCACGGTCTTTCGAGCAAAGAGTAATG
CAGCATTAACCAAGTGCACCGTGCGGCTTATCAAGCTTGACAACGGGGCA
GTAGAGGGGGTGAATACATCGAGATGCGAGATCCAGCAAGAGGTCAGAAA
GAGATATCGCATTACGGCGCATGCACAAGCAAGGTGA back to top
|