jgi.p|Nanoce1779_2|584214, mRNA_3022 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584214
Unique NamemRNA_3022
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length760
Alignment locationscaffold_7:477166..478596 -

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Properties
Property NameValue
TranscriptId584300
TrackFilteredModels2
ProteinId584214
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:477166..478596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584214gene_3022Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584214mRNA_3022-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3022CDS_3022Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3022 ID=mRNA_3022|Name=jgi.p|Nanoce1779_2|584214|organism=Nannochloropsis oceanica|type=mRNA|length=760bp
CAACAGGACAAGGAGAAGCTGGGCCGGCACTTTCATCCGGACGTGCTCCT
CTTTTCGCTTCCAACTCGTCATGGCAGACAACTCAAAGCGGCCGTTGAAG
GGCTATGGTGGAGGAGGTGGGGCCGGTGGTGGCTATAAGCGCCCACGATA
CCAGTCCTCGTCTTGGTCATCGTCGTTGCAGGCGGTGCGGAACGGGCAGG
CTATCCTCTTCACGTGCGACGTGGGCCGGGAGGCCAAAGCAGCCAAGGAG
ATGTATGTCGTCCTAGAACGGTATGCGGAAGAAGCAAAAGGCTCCGGCAC
ACCTGGCAGCAGAGAGTCTACGGACGACGAGGATGAAGTCCCCGCTGCCA
TGGCCGCCGTCACAGACTCTGCTGAGATTGAAACCATGGCCAATGAAAGC
GTTCGGGCCTCGCTTCTGCAAGAAATCGCAGAACTGAAGAAGGAAAAGAG
GAAGGGGGCCAAGACGACTATGGCCACGGTCGAGACCGGCTGCAAGGGCA
CATGTGGGATCAGCATCCCCAGAAACGGGCATTTGTCCCCCGTTGAACTG
TGCCTGCGCATGCTAGAGGAAGCTAAAGCAGGGCACAGTAGTACTCGAGG
CATCGTCAAGCTGATGCCGTTGGAGCGGATCAGCTTCGGGGGGGACTTAG
AAGCCATCAAGCAGCAGCAGTAGCAGCAGCAGCAGCACCGCCAGGCGCGG
AGGACGGGAAAGGGGCCGACGAGGCCAAGAGGCCCACGTATATGGTAAGT
TTGTGTCGAC
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protein sequence of jgi.p|Nanoce1779_2|584214

>mRNA_3022-protein ID=mRNA_3022-protein|Name=jgi.p|Nanoce1779_2|584214|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MADNSKRPLKGYGGGGGAGGGYKRPRYQSSSWSSSLQAVRNGQAILFTCD
VGREAKAAKEMYVVLERYAEEAKGSGTPGSRESTDDEDEVPAAMAAVTDS
AEIETMANESVRASLLQEIAELKKEKRKGAKTTMATVETGCKGTCGISIP
RNGHLSPVELCLRMLEEAKAGHSSTRGIVKLMPLERISFGGDLEAIKQQQ
*
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mRNA from alignment at scaffold_7:477166..478596-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3022 ID=mRNA_3022|Name=jgi.p|Nanoce1779_2|584214|organism=Nannochloropsis oceanica|type=mRNA|length=1431bp|location=Sequence derived from alignment at scaffold_7:477166..478596- (Nannochloropsis oceanica)
CAACAGGACAAGGAGAAGCTGGGCCGGCACTTTCATCCGGACGTGCTCCT
CTTTTCGCTTCCAACTCGTCATGGCAGACAACTCAAAGCGGCCGTTGGTA
AGTGATGCTGCTGATGATGATCCCAGGGGCGGAGGAGAGAGGAGGTCGAG
AATGAACGCCGCAGCACCTGTACGTCAATCAACTCACCGGCCATCCACTG
CCATAATACAAGAAGGGCTATGGTGGAGGAGGTGGGGCCGGTGGTGGCTA
TAAGCGCCCACGATACCAGTCCTCGTCTTGGTCATCGTCGTTGCAGGCGG
TGCGGAACGGGCAGGCTATCCTCTTCACGTGCGACGTGGGCCGGGAGGCC
AAAGCAGCCAAGGAGATGTATGTCGTCCTAGAACGGGTTAGTCATCCTGT
CTTGTGGAGGACGGAGGATACGGCAGAATGGCAACGATAGCATGCTTGCT
GCAGTAGCACAGTCGAATCGATGTTCTCTCGTAAAACAAAGCCAGTCCCC
CTGCACAATTCTCCTGGCAAAGCAAGATTCTCCTATTTATGTAAAAAAAA
ATCCTGAAATTTGGTATTTTTCTCGCCCCTTTACTCACCACGCACTCACC
TTACCTCACAAACAGTATGCGGAAGAAGCAAAAGGCTCCGGCACACCTGG
CAGCAGAGAGTCTACGGACGACGAGGATGAAGTCCCCGCTGCCATGGCCG
CCGTCACAGACTCTGCTGAGATTGAAACCATGGCCAATGAAAGCGTTCGG
GCCTCGCTTCTGCAAGAAATCGCAGAACTGAAGAAGGAAAAGAGGAAGGG
GGCCAAGACGACTATGGCCACGGTCGAGACCGGCTGCAAGGGCACATGTG
GGATCAGCATCCCCAGAAACGGGCATTTGTCCCCCGTTGAACTGTGCCTG
CGCATGCTAGAGGAAGCTAAAGCAGGGCACAGTAGTACTCGGTGCGTGAC
GTTTCTCGTTTCCAGCCATGATAAAACTTTCTCTTCCACTCTTCACGAAG
CACACTCTGCCCAATTCCCTAACAGAGGCATCGTCAAGCTGATGCCGTTG
GAGCGGATCAGCTTCGGGGGGGACTTAGAAGCCATCAAGGTACAAGTACG
GGATTTACTGCACGAGAAAGGCCTCCTGCTCAAAAATCAAAAAGAAGAAC
AAGTGTCGGGAATCAGGGGAGAAGGAACAGCAGCAGCAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAGCAGCAGCAGTAGCAGCAGCAGCAGCACCGCCAGGCGCGG
AGGACGGGAAAGGGGCCGACGAGGCCAAGAGGCCCACGGTGCGTAGCAAA
ATAAAATATTTTCATGTAACCAAAGCCAAGTTAAATATCATCCCCTCATT
CACCCTTAGTATATGGTAAGTTTGTGTCGAC
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Coding sequence (CDS) from alignment at scaffold_7:477166..478596-

>mRNA_3022 ID=mRNA_3022|Name=jgi.p|Nanoce1779_2|584214|organism=Nannochloropsis oceanica|type=CDS|length=3015bp|location=Sequence derived from alignment at scaffold_7:477166..478596- (Nannochloropsis oceanica)
CAGCAGCAGTAGAGGCATCGTCAAGCTGATGCCGTTGGAGCGGATCAGCT
TCGGGGGGGACTTAGAAGCCATCAAGTATGCGGAAGAAGCAAAAGGCTCC
GGCACACCTGGCAGCAGAGAGTCTACGGACGACGAGGATGAAGTCCCCGC
TGCCATGGCCGCCGTCACAGACTCTGCTGAGATTGAAACCATGGCCAATG
AAAGCGTTCGGGCCTCGCTTCTGCAAGAAATCGCAGAACTGAAGAAGGAA
AAGAGGAAGGGGGCCAAGACGACTATGGCCACGGTCGAGACCGGCTGCAA
GGGCACATGTGGGATCAGCATCCCCAGAAACGGGCATTTGTCCCCCGTTG
AACTGTGCCTGCGCATGCTAGAGGAAGCTAAAGCAGGGCACAGTAGTACT
CGAAGGGCTATGGTGGAGGAGGTGGGGCCGGTGGTGGCTATAAGCGCCCA
CGATACCAGTCCTCGTCTTGGTCATCGTCGTTGCAGGCGGTGCGGAACGG
GCAGGCTATCCTCTTCACGTGCGACGTGGGCCGGGAGGCCAAAGCAGCCA
AGGAGATGTATGTCGTCCTAGAACGGATGGCAGACAACTCAAAGCGGCCG
TTGCAGCAGCAGTAGAGGCATCGTCAAGCTGATGCCGTTGGAGCGGATCA
GCTTCGGGGGGGACTTAGAAGCCATCAAGTATGCGGAAGAAGCAAAAGGC
TCCGGCACACCTGGCAGCAGAGAGTCTACGGACGACGAGGATGAAGTCCC
CGCTGCCATGGCCGCCGTCACAGACTCTGCTGAGATTGAAACCATGGCCA
ATGAAAGCGTTCGGGCCTCGCTTCTGCAAGAAATCGCAGAACTGAAGAAG
GAAAAGAGGAAGGGGGCCAAGACGACTATGGCCACGGTCGAGACCGGCTG
CAAGGGCACATGTGGGATCAGCATCCCCAGAAACGGGCATTTGTCCCCCG
TTGAACTGTGCCTGCGCATGCTAGAGGAAGCTAAAGCAGGGCACAGTAGT
ACTCGAAGGGCTATGGTGGAGGAGGTGGGGCCGGTGGTGGCTATAAGCGC
CCACGATACCAGTCCTCGTCTTGGTCATCGTCGTTGCAGGCGGTGCGGAA
CGGGCAGGCTATCCTCTTCACGTGCGACGTGGGCCGGGAGGCCAAAGCAG
CCAAGGAGATGTATGTCGTCCTAGAACGGATGGCAGACAACTCAAAGCGG
CCGTTGCAGCAGCAGTAGAGGCATCGTCAAGCTGATGCCGTTGGAGCGGA
TCAGCTTCGGGGGGGACTTAGAAGCCATCAAGTATGCGGAAGAAGCAAAA
GGCTCCGGCACACCTGGCAGCAGAGAGTCTACGGACGACGAGGATGAAGT
CCCCGCTGCCATGGCCGCCGTCACAGACTCTGCTGAGATTGAAACCATGG
CCAATGAAAGCGTTCGGGCCTCGCTTCTGCAAGAAATCGCAGAACTGAAG
AAGGAAAAGAGGAAGGGGGCCAAGACGACTATGGCCACGGTCGAGACCGG
CTGCAAGGGCACATGTGGGATCAGCATCCCCAGAAACGGGCATTTGTCCC
CCGTTGAACTGTGCCTGCGCATGCTAGAGGAAGCTAAAGCAGGGCACAGT
AGTACTCGAAGGGCTATGGTGGAGGAGGTGGGGCCGGTGGTGGCTATAAG
CGCCCACGATACCAGTCCTCGTCTTGGTCATCGTCGTTGCAGGCGGTGCG
GAACGGGCAGGCTATCCTCTTCACGTGCGACGTGGGCCGGGAGGCCAAAG
CAGCCAAGGAGATGTATGTCGTCCTAGAACGGATGGCAGACAACTCAAAG
CGGCCGTTGCAGCAGCAGTAGAGGCATCGTCAAGCTGATGCCGTTGGAGC
GGATCAGCTTCGGGGGGGACTTAGAAGCCATCAAGTATGCGGAAGAAGCA
AAAGGCTCCGGCACACCTGGCAGCAGAGAGTCTACGGACGACGAGGATGA
AGTCCCCGCTGCCATGGCCGCCGTCACAGACTCTGCTGAGATTGAAACCA
TGGCCAATGAAAGCGTTCGGGCCTCGCTTCTGCAAGAAATCGCAGAACTG
AAGAAGGAAAAGAGGAAGGGGGCCAAGACGACTATGGCCACGGTCGAGAC
CGGCTGCAAGGGCACATGTGGGATCAGCATCCCCAGAAACGGGCATTTGT
CCCCCGTTGAACTGTGCCTGCGCATGCTAGAGGAAGCTAAAGCAGGGCAC
AGTAGTACTCGAAGGGCTATGGTGGAGGAGGTGGGGCCGGTGGTGGCTAT
AAGCGCCCACGATACCAGTCCTCGTCTTGGTCATCGTCGTTGCAGGCGGT
GCGGAACGGGCAGGCTATCCTCTTCACGTGCGACGTGGGCCGGGAGGCCA
AAGCAGCCAAGGAGATGTATGTCGTCCTAGAACGGATGGCAGACAACTCA
AAGCGGCCGTTGCAGCAGCAGTAGAGGCATCGTCAAGCTGATGCCGTTGG
AGCGGATCAGCTTCGGGGGGGACTTAGAAGCCATCAAGTATGCGGAAGAA
GCAAAAGGCTCCGGCACACCTGGCAGCAGAGAGTCTACGGACGACGAGGA
TGAAGTCCCCGCTGCCATGGCCGCCGTCACAGACTCTGCTGAGATTGAAA
CCATGGCCAATGAAAGCGTTCGGGCCTCGCTTCTGCAAGAAATCGCAGAA
CTGAAGAAGGAAAAGAGGAAGGGGGCCAAGACGACTATGGCCACGGTCGA
GACCGGCTGCAAGGGCACATGTGGGATCAGCATCCCCAGAAACGGGCATT
TGTCCCCCGTTGAACTGTGCCTGCGCATGCTAGAGGAAGCTAAAGCAGGG
CACAGTAGTACTCGAAGGGCTATGGTGGAGGAGGTGGGGCCGGTGGTGGC
TATAAGCGCCCACGATACCAGTCCTCGTCTTGGTCATCGTCGTTGCAGGC
GGTGCGGAACGGGCAGGCTATCCTCTTCACGTGCGACGTGGGCCGGGAGG
CCAAAGCAGCCAAGGAGATGTATGTCGTCCTAGAACGGATGGCAGACAAC
TCAAAGCGGCCGTTG
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Synonyms
Publications