jgi.p|Nanoce1779_2|584213, mRNA_3021 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584213
Unique NamemRNA_3021
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length528
Alignment locationscaffold_7:476741..477410 -

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Properties
Property NameValue
TranscriptId584299
TrackFilteredModels2
ProteinId584213
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:476741..477410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584213gene_3021Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584213mRNA_3021-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3021CDS_3021Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3021 ID=mRNA_3021|Name=jgi.p|Nanoce1779_2|584213|organism=Nannochloropsis oceanica|type=mRNA|length=528bp
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAGCAGCAGCAGTAGCAGCAGCAGCAGC
ACCGCCAGGCGCGGAGGACGGGAAAGGGGCCGACGAGGCCAAGAGGCCCA
CGGTGCGTAGCAAAATAAAATATTTTCATGTAACCAAAGCCAAGTTAAAT
ATCATCCCCTCATTCACCCTTAGTATATGGTAAGTTTGTGTCGACGCAAC
TACGCCGCCCACACTCGCGACGAGATATTCGAAGCGCTGGGTGACGTGAT
TGATGGCAGGTGGAAGGTGGACTTGAAGAACCCGGACCATGTCATCCTCA
TAGAGGCCATAAAGGGTACAATCGGCTTTAGTATTTGCCCGCGTTTCATC
GAGCTGAAGAAGTACAATCTCCGTCAGCTCCAAGACCAGGCCCGTGAAAA
GGCCAAGACAGCGCGGAAAGAGCACGTGGAAAAGGAAGAGGAATAGATCA
AGTTAGAAATAAACAGACATCACTCCTT
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protein sequence of jgi.p|Nanoce1779_2|584213

>mRNA_3021-protein ID=mRNA_3021-protein|Name=jgi.p|Nanoce1779_2|584213|organism=Nannochloropsis oceanica|type=polypeptide|length=90bp
MVSLCRRNYAAHTRDEIFEALGDVIDGRWKVDLKNPDHVILIEAIKGTIG
FSICPRFIELKKYNLRQLQDQAREKAKTARKEHVEKEEE*
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mRNA from alignment at scaffold_7:476741..477410-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3021 ID=mRNA_3021|Name=jgi.p|Nanoce1779_2|584213|organism=Nannochloropsis oceanica|type=mRNA|length=670bp|location=Sequence derived from alignment at scaffold_7:476741..477410- (Nannochloropsis oceanica)
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAGCAGCAGCAGTAGCAGCAGCAGCAGC
ACCGCCAGGCGCGGAGGACGGGAAAGGGGCCGACGAGGCCAAGAGGCCCA
CGGTGCGTAGCAAAATAAAATATTTTCATGTAACCAAAGCCAAGTTAAAT
ATCATCCCCTCATTCACCCTTAGTATATGGTAAGTTTGTGTCGACGCAAC
TACGCCGCCCACACTCGCGACGAGATATTCGAAGCGCTGGGTGACGTGAT
TGATGGCAGGTGGAAGGTGGACTTGAAGAACCCGGACCATGTCATCCTCA
TAGAGGCCATAAAGGTAAGAAGGCCGAGGAGGCTGAGCTGAGGGTGGAGA
AGGGGGATAGGGAAAGGCCATGTACTGGGTGTGTCATTTTGCAGTTGCGA
TGTCTTCATCCTGCTCTCTGAATTTTCTTTTTTTGGCCCACCTCTTAACG
ATACAGGGTACAATCGGCTTTAGTATTTGCCCGCGTTTCATCGAGCTGAA
GAAGTACAATCTCCGTCAGCTCCAAGACCAGGCCCGTGAAAAGGCCAAGA
CAGCGCGGAAAGAGCACGTGGAAAAGGAAGAGGAATAGATCAAGTTAGAA
ATAAACAGACATCACTCCTT
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Coding sequence (CDS) from alignment at scaffold_7:476741..477410-

>mRNA_3021 ID=mRNA_3021|Name=jgi.p|Nanoce1779_2|584213|organism=Nannochloropsis oceanica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_7:476741..477410- (Nannochloropsis oceanica)
GGTACAATCGGCTTTAGTATTTGCCCGCGTTTCATCGAGCTGAAGAAGTA
CAATCTCCGTCAGCTCCAAGACCAGGCCCGTGAAAAGGCCAAGACAGCGC
GGAAAGAGCACGTGGAAAAGGAAGAGGAATAGATGGTAAGTTTGTGTCGA
CGCAACTACGCCGCCCACACTCGCGACGAGATATTCGAAGCGCTGGGTGA
CGTGATTGATGGCAGGTGGAAGGTGGACTTGAAGAACCCGGACCATGTCA
TCCTCATAGAGGCCATAAAGGGTACAATCGGCTTTAGTATTTGCCCGCGT
TTCATCGAGCTGAAGAAGTACAATCTCCGTCAGCTCCAAGACCAGGCCCG
TGAAAAGGCCAAGACAGCGCGGAAAGAGCACGTGGAAAAGGAAGAGGAAT
AGATGGTAAGTTTGTGTCGACGCAACTACGCCGCCCACACTCGCGACGAG
ATATTCGAAGCGCTGGGTGACGTGATTGATGGCAGGTGGAAGGTGGACTT
GAAGAACCCGGACCATGTCATCCTCATAGAGGCCATAAAG
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Synonyms
Publications