jgi.p|Nanoce1779_2|584201, mRNA_3018 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584201
Unique Name	mRNA_3018
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1941
Alignment location	scaffold_7:470240..472455 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584287
Track	FilteredModels2
ProteinId	584201

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:470240..472455 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584201	gene_3018	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584201	mRNA_3018-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3018	CDS_3018	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:470240..472455+
coding sequence from alignment at scaffold_7:470240..472455+

mRNA sequence

>mRNA_3018 ID=mRNA_3018|Name=jgi.p|Nanoce1779_2|584201|organism=Nannochloropsis oceanica|type=mRNA|length=1941bp
CCAGCATGACAAGCAAGGCATTATACTTGCACGCTTCATAAGTAACCCTG
CGCTTCGCTTATCATGAGCATCGTCCGTTTATTCACTCATTTCATACACG
TGGGTGGCCTCCCATACGAATCCTTGCAAATACACCACTCACAGGATCGT
GGCGCTGGGCCAGCAACTTGACTCCATGGCCATGTTGCTCCTGCAGCCAT
TACAACGGGAATGCTTCTGTTTGGGGGCCGCACTAATGCTGGTTTGTGTC
TTGATCCATCCTATTGTGATGGCGTTTGTGCCTACTACCTTGTCGCATCA
TGTCCTGCTTTCTTCCTCTTGCATCCCCTCGGCCGGCACCATCCACGCCA
TGGGCCCAGCCCCTACAACGAGGAGCCAATCGCGAAGTCAATCGCGTTGG
GACTTTTTGCCGCTACAGCATACCGCCACCACTAGTGCTGATGAAGACAT
AATGGCCGAGAAGATTGTGGGCGAGGCGCAAGCACGGTTGCGACCTGCTT
TTGAGGACGTGGACCGCCGGACACAGCGCATCCTGAAGCGGGTGCTTACA
GCCTTCCGGGAGCACCAGGTGGGGACGCACATGTTTAACGGCATCGACGG
GTACGGACATGGCGACGTAGGTCGTGACACGTTGGAAAAGGTTTACGCGT
CTCTCTTTGGTGCCGAGGCTGCGCTTGTCCGCGTACAGATTTTTAGCGGA
ACCCACGCCATTTCTTGCGCCCTCTTTGGCGTCCTCCGGCCGGGGGACAA
AATGTTGGGTTTGAGCGGCCCTCCATACGATACACTTGAAGAGGTAATTG
GAACTCGAGTAGGACACCAGGATGAAGGTAGTGGCCCAGCCCCGGGGCAG
CGGCCGCTGACAGGGAGCTTAAAGGAATGGGGTGTGGCATATGATCAGGT
GGATCTCCTCTCTTCCGTGGCACCAGGACAGTATTTTGACCTCGCCGAGA
TCGACCGCCGCATTACTGCAGATCCATGTATTCGGGTTTTGCACATTCAG
CGCTCTTGCGGTTACCAGTGGCGACCTTCCATTCCCGTGGCCGAGATTGG
CCATGTTATTGCCCATATCCGCGCGGCCTTTCCAAGCCGGGAGTTGGTTG
TATTCGTCGACAACTGCTACGGGGAGTTTGTGGAGGACTTGGAGCCTACA
CATGTGGGTGCAGATATCGTAGCGGGCTCATTGATAAAGAATCCGGGTGG
CACGCTCGCTCCGACGGGTGGGTATGTAATTGGCAAGCAACATTACGTAC
AGGCAGCCTTCAAGCGATTGAGCGCACCTGGCGTGGAGGGCGGAGCCACT
TTGGGTAAGACGCGTTGGATTCTACAGGGCCTCTTTATGGCCCCGGCTGT
GGTGGGTGAGTCGCTCAAGGGCGCGATGCTATTGGCCGAGGTCATGGGCA
CTCGGTTCGGACTGCCTTGTAATCCAGCCCCAGGCACATCACGAACCGAT
ATTATTCAGGCCGTACAGGTAGGCAGTCGATACCAGGTTATCCAATTTTG
CCAGCAGGTGCAGCGGTTGAGCCCCATCGGTGCTTACATTCGGCCGACTG
CGGGCATTTCGCCGGGTTACGGCGACGAAGTTGTCTTTGCCGTAGGCACA
TTTGTCGACGGCAGCACCCTAGAATTGAGCGCTGATGGACCGCTGCGGGA
GCCGTATACTGTCTTTTCGCAGGGTTGCACGCATTGGACACATTGGGCCC
TCGTTCTAGAGGCAGCTTTGGTACAGATGGGCTTTTGCCATGATGAATAC
AGTCCAGGAGGCATGGGTTGTGCAAAGGACTTCAGTGAAAACGTAAATAA
AAGCACTCTACTCGCAGAAGGAGGAATGAGTAAGGGATAAGAGAAGAAAA
TTACCATGGGACAATTTGACGGGCTTTAAGCCGACCCTTGGGGAACAGGA
TTGCCAGAAAATGAAGTAATCAGCGTACGAATGCATGAAAA

protein sequence of jgi.p|Nanoce1779_2|584201

>mRNA_3018-protein ID=mRNA_3018-protein|Name=jgi.p|Nanoce1779_2|584201|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MAMLLLQPLQRECFCLGAALMLVCVLIHPIVMAFVPTTLSHHVLLSSSCI
PSAGTIHAMGPAPTTRSQSRSQSRWDFLPLQHTATTSADEDIMAEKIVGE
AQARLRPAFEDVDRRTQRILKRVLTAFREHQVGTHMFNGIDGYGHGDVGR
DTLEKVYASLFGAEAALVRVQIFSGTHAISCALFGVLRPGDKMLGLSGPP
YDTLEEVIGTRVGHQDEGSGPAPGQRPLTGSLKEWGVAYDQVDLLSSVAP
GQYFDLAEIDRRITADPCIRVLHIQRSCGYQWRPSIPVAEIGHVIAHIRA
AFPSRELVVFVDNCYGEFVEDLEPTHVGADIVAGSLIKNPGGTLAPTGGY
VIGKQHYVQAAFKRLSAPGVEGGATLGKTRWILQGLFMAPAVVGESLKGA
MLLAEVMGTRFGLPCNPAPGTSRTDIIQAVQVGSRYQVIQFCQQVQRLSP
IGAYIRPTAGISPGYGDEVVFAVGTFVDGSTLELSADGPLREPYTVFSQG
CTHWTHWALVLEAALVQMGFCHDEYSPGGMGCAKDFSENVNKSTLLAEGG
MSKG*

mRNA from alignment at scaffold_7:470240..472455+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3018 ID=mRNA_3018|Name=jgi.p|Nanoce1779_2|584201|organism=Nannochloropsis oceanica|type=mRNA|length=2216bp|location=Sequence derived from alignment at scaffold_7:470240..472455+ (Nannochloropsis oceanica)
CCAGCATGACAAGCAAGGCATTATACTTGCACGCTTCATAAGTAACCCTG
CGCTTCGCTTATCATGAGCATCGTCCGTTTATTCACTCATTTCATACACG
TGGGTGGCCTCCCATACGAATCCTTGCAAATACACCACTCACAGGATCGT
GGCGCTGGGCCAGCAACTTGACTCCATGGCCATGTTGCTCCTGCAGCCAT
TACAACGGGAATGCTTCTGTTTGGGGGCCGCACTAATGCTGGTTTGTGTC
TTGATCCATCCTATTGTGATGGCGTTTGTGCCTACTACCTTGTCGCATCA
TGTCCTGCTTTCTTCCTCTTGCATCCCCTCGGCCGGCACCATCCACGCCA
TGGGCCCAGCCCCTACAACGAGGAGCCAATCGCGAAGTCAATCGCGTTGG
GACTTTTTGCCGCTACAGCATACCGCCACCACTAGTGCTGATGAAGACAT
AATGGCCGAGAAGATTGTGGGCGAGGCGCAAGCACGGTTGCGACCTGCTT
TTGAGGACGTGGACCGCCGGACACAGCGCATCCTGAAGCGGGTGCTTACA
GCCTTCCGGGAGCACCAGGTGGGGACGCACATGTTTAACGGCATCGACGG
GTACGGACATGGCGACGTAGGTCGTGACACGTTGGAAAAGGTTTACGCGT
CTCTCTTTGGTGCCGAGGCTGCGCTTGTCCGCGTACAGATTTTTAGCGGA
ACCCACGCCATTTCTTGCGCCCTCTTTGGCGTCCTCCGGCCGGGGGACAA
AATGTTGGGTTTGAGCGGCCCTCCATACGATACACTTGAAGAGGTAATTG
GAACTCGAGTAGGACACCAGGATGAAGGTAGTGGCCCAGCCCCGGGGCAG
CGGCCGCTGACAGGGAGCTTAAAGGAATGGGGTGTGGCATATGATCAGGT
GGATCTCCTCTCTTCCGTGGCACCAGGACAGTATTTTGACCTCGCCGAGA
TCGACCGCCGCATTACTGCAGATCCATGTATTCGGGTTTTGCACATTCAG
CGCTCTTGCGGTTACCAGTGGCGACCTTCCATTCCCGTGGCCGAGATTGG
CCATGTTATTGCCCATATCCGCGCGGCCTTTCCAAGCCGGGAGTTGGTTG
TATTCGTCGACAACTGCTACGGGGAGTTTGTGGAGGACTTGGAGCCTACA
CATGTGGGTGCAGATATCGTAGCGGGCTCATTGATAAAGGTAAGGGAAAG
CATCATCTGGAAAAGGATAGTCGGGTCGGGCGCCCCAGGGGGTGGGAGGG
GTACTGAGTGGTCTGGGCCAATTTAAGCAGAGGCGTAGTTCGGGGACTAG
GGTCCTTTTATGCGATTAAAGCAAAAAAAAGGCTTAACAGGGTACAGCAT
CGTGTTAATTTCAAGCAATTGAACGCCTACGAGGGACAATCGCAAAAAGC
AGCTGAACGCTTTCGTGATTGACCATTCTCAATCATACCCGCACCTGCGC
TCACATCGTTACAGAATCCGGGTGGCACGCTCGCTCCGACGGGTGGGTAT
GTAATTGGCAAGCAACATTACGTACAGGCAGCCTTCAAGCGATTGAGCGC
ACCTGGCGTGGAGGGCGGAGCCACTTTGGGTAAGACGCGTTGGATTCTAC
AGGGCCTCTTTATGGCCCCGGCTGTGGTGGGTGAGTCGCTCAAGGGCGCG
ATGCTATTGGCCGAGGTCATGGGCACTCGGTTCGGACTGCCTTGTAATCC
AGCCCCAGGCACATCACGAACCGATATTATTCAGGCCGTACAGGTAGGCA
GTCGATACCAGGTTATCCAATTTTGCCAGCAGGTGCAGCGGTTGAGCCCC
ATCGGTGCTTACATTCGGCCGACTGCGGGCATTTCGCCGGGTTACGGCGA
CGAAGTTGTCTTTGCCGTAGGCACATTTGTCGACGGCAGCACCCTAGAAT
TGAGCGCTGATGGACCGCTGCGGGAGCCGTATACTGTCTTTTCGCAGGGT
TGCACGCATTGGACACATTGGGCCCTCGTTCTAGAGGCAGCTTTGGTACA
GATGGGCTTTTGCCATGATGAATACAGTCCAGGAGGCATGGGTTGTGCAA
AGGACTTCAGTGAAAACGTAAATAAAAGCACTCTACTCGCAGAAGGAGGA
ATGAGTAAGGGATAAGAGAAGAAAATTACCATGGGACAATTTGACGGGCT
TTAAGCCGACCCTTGGGGAACAGGATTGCCAGAAAATGAAGTAATCAGCG
TACGAATGCATGAAAA

Coding sequence (CDS) from alignment at scaffold_7:470240..472455+

>mRNA_3018 ID=mRNA_3018|Name=jgi.p|Nanoce1779_2|584201|organism=Nannochloropsis oceanica|type=CDS|length=3330bp|location=Sequence derived from alignment at scaffold_7:470240..472455+ (Nannochloropsis oceanica)
ATGGCCATGTTGCTCCTGCAGCCATTACAACGGGAATGCTTCTGTTTGGG
GGCCGCACTAATGCTGGTTTGTGTCTTGATCCATCCTATTGTGATGGCGT
TTGTGCCTACTACCTTGTCGCATCATGTCCTGCTTTCTTCCTCTTGCATC
CCCTCGGCCGGCACCATCCACGCCATGGGCCCAGCCCCTACAACGAGGAG
CCAATCGCGAAGTCAATCGCGTTGGGACTTTTTGCCGCTACAGCATACCG
CCACCACTAGTGCTGATGAAGACATAATGGCCGAGAAGATTGTGGGCGAG
GCGCAAGCACGGTTGCGACCTGCTTTTGAGGACGTGGACCGCCGGACACA
GCGCATCCTGAAGCGGGTGCTTACAGCCTTCCGGGAGCACCAGGTGGGGA
CGCACATGTTTAACGGCATCGACGGGTACGGACATGGCGACGTAGGTCGT
GACACGTTGGAAAAGGTTTACGCGTCTCTCTTTGGTGCCGAGGCTGCGCT
TGTCCGCGTACAGATTTTTAGCGGAACCCACGCCATTTCTTGCGCCCTCT
TTGGCGTCCTCCGGCCGGGGGACAAAATGTTGGGTTTGAGCGGCCCTCCA
TACGATACACTTGAAGAGGTAATTGGAACTCGAGTAGGACACCAGGATGA
AGGTAGTGGCCCAGCCCCGGGGCAGCGGCCGCTGACAGGGAGCTTAAAGG
AATGGGGTGTGGCATATGATCAGGTGGATCTCCTCTCTTCCGTGGCACCA
GGACAGTATTTTGACCTCGCCGAGATCGACCGCCGCATTACTGCAGATCC
ATGTATTCGGGTTTTGCACATTCAGCGCTCTTGCGGTTACCAGTGGCGAC
CTTCCATTCCCGTGGCCGAGATTGGCCATGTTATTGCCCATATCCGCGCG
GCCTTTCCAAGCCGGGAGTTGGTTGTATTCGTCGACAACTGCTACGGGGA
GTTTGTGGAGGACTTGGAGCCTACACATGTGGGTGCAGATATCGTAGCGG
GCTCATTGATAAAGAATCCGGGTGGCACGCTCGCTCCGACGGGTGGGTAT
GTAATTGGCAAGCAACATTACGTACAGGCAGCCTTCAAGCGATTGAGCGC
ACCTGGCGTGGAGGGCGGAGCCACTTTGGGTAAGACGCGTTGGATTCTAC
AGGGCCTCTTTATGGCCCCGGCTGTGGTGGGTGAGTCGCTCAAGGGCGCG
ATGCTATTGGCCGAGGTCATGGGCACTCGGTTCGGACTGCCTTGTAATCC
AGCCCCAGGCACATCACGAACCGATATTATTCAGGCCGTACAGGTAGGCA
GTCGATACCAGGTTATCCAATTTTGCCAGCAGGTGCAGCGGTTGAGCCCC
ATCGGTGCTTACATTCGGCCGACTGCGGGCATTTCGCCGGGTTACGGCGA
CGAAGTTGTCTTTGCCGTAGGCACATTTGTCGACGGCAGCACCCTAGAAT
TGAGCGCTGATGGACCGCTGCGGGAGCCGTATACTGTCTTTTCGCAGGGT
TGCACGCATTGGACACATTGGGCCCTCGTTCTAGAGGCAGCTTTGGTACA
GATGGGCTTTTGCCATGATGAATACAGTCCAGGAGGCATGGGTTGTGCAA
AGGACTTCAGTGAAAACGTAAATAAAAGCACTCTACTCGCAGAAGGAGGA
ATGAGTAAGGGATAAATGGCCATGTTGCTCCTGCAGCCATTACAACGGGA
ATGCTTCTGTTTGGGGGCCGCACTAATGCTGGTTTGTGTCTTGATCCATC
CTATTGTGATGGCGTTTGTGCCTACTACCTTGTCGCATCATGTCCTGCTT
TCTTCCTCTTGCATCCCCTCGGCCGGCACCATCCACGCCATGGGCCCAGC
CCCTACAACGAGGAGCCAATCGCGAAGTCAATCGCGTTGGGACTTTTTGC
CGCTACAGCATACCGCCACCACTAGTGCTGATGAAGACATAATGGCCGAG
AAGATTGTGGGCGAGGCGCAAGCACGGTTGCGACCTGCTTTTGAGGACGT
GGACCGCCGGACACAGCGCATCCTGAAGCGGGTGCTTACAGCCTTCCGGG
AGCACCAGGTGGGGACGCACATGTTTAACGGCATCGACGGGTACGGACAT
GGCGACGTAGGTCGTGACACGTTGGAAAAGGTTTACGCGTCTCTCTTTGG
TGCCGAGGCTGCGCTTGTCCGCGTACAGATTTTTAGCGGAACCCACGCCA
TTTCTTGCGCCCTCTTTGGCGTCCTCCGGCCGGGGGACAAAATGTTGGGT
TTGAGCGGCCCTCCATACGATACACTTGAAGAGGTAATTGGAACTCGAGT
AGGACACCAGGATGAAGGTAGTGGCCCAGCCCCGGGGCAGCGGCCGCTGA
CAGGGAGCTTAAAGGAATGGGGTGTGGCATATGATCAGGTGGATCTCCTC
TCTTCCGTGGCACCAGGACAGTATTTTGACCTCGCCGAGATCGACCGCCG
CATTACTGCAGATCCATGTATTCGGGTTTTGCACATTCAGCGCTCTTGCG
GTTACCAGTGGCGACCTTCCATTCCCGTGGCCGAGATTGGCCATGTTATT
GCCCATATCCGCGCGGCCTTTCCAAGCCGGGAGTTGGTTGTATTCGTCGA
CAACTGCTACGGGGAGTTTGTGGAGGACTTGGAGCCTACACATGTGGGTG
CAGATATCGTAGCGGGCTCATTGATAAAGAATCCGGGTGGCACGCTCGCT
CCGACGGGTGGGTATGTAATTGGCAAGCAACATTACGTACAGGCAGCCTT
CAAGCGATTGAGCGCACCTGGCGTGGAGGGCGGAGCCACTTTGGGTAAGA
CGCGTTGGATTCTACAGGGCCTCTTTATGGCCCCGGCTGTGGTGGGTGAG
TCGCTCAAGGGCGCGATGCTATTGGCCGAGGTCATGGGCACTCGGTTCGG
ACTGCCTTGTAATCCAGCCCCAGGCACATCACGAACCGATATTATTCAGG
CCGTACAGGTAGGCAGTCGATACCAGGTTATCCAATTTTGCCAGCAGGTG
CAGCGGTTGAGCCCCATCGGTGCTTACATTCGGCCGACTGCGGGCATTTC
GCCGGGTTACGGCGACGAAGTTGTCTTTGCCGTAGGCACATTTGTCGACG
GCAGCACCCTAGAATTGAGCGCTGATGGACCGCTGCGGGAGCCGTATACT
GTCTTTTCGCAGGGTTGCACGCATTGGACACATTGGGCCCTCGTTCTAGA
GGCAGCTTTGGTACAGATGGGCTTTTGCCATGATGAATACAGTCCAGGAG
GCATGGGTTGTGCAAAGGACTTCAGTGAAAACGTAAATAAAAGCACTCTA
CTCGCAGAAGGAGGAATGAGTAAGGGATAA

Synonyms

Publications