jgi.p|Nanoce1779_2|584168, mRNA_3014 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584168
Unique NamemRNA_3014
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length960
Alignment locationscaffold_7:462177..463329 +

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Properties
Property NameValue
TranscriptId584254
TrackFilteredModels2
ProteinId584168
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:462177..463329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584168gene_3014Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584168mRNA_3014-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3014CDS_3014Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3014 ID=mRNA_3014|Name=jgi.p|Nanoce1779_2|584168|organism=Nannochloropsis oceanica|type=mRNA|length=960bp
ACAGGCAGATCTTTCCTCTCCCTGCACATCATGACTACCATGCTTCGCCT
GTCCGTTCTCCTGGTCCTGCTTTCCATGGTAGCCTCCTTCCTAGTCCCCG
CTCCCTTGCCGGCCATGACCTCTGTGCCACAGCAAACTCGGCGAGGGAAG
ATGATGATGCTGGGCATGTTTGGGAAGAAGTCGGCCGGAGGCAAAAAAAA
GACATTTACGGTGACGGTGCAACAGAAGTTTTACAAGGACGCGGAGCTGG
AAGTAGATGCGGGCGCACCAGTGAACCTGCGCAAGGAGCTCATGAAGAAT
AAGATTGACATCTACCCGTTGCAAGGCAAGATCTACAACTGCGGCGGAGG
GGGCCAGTGCGGTACCTGTGCCGTGCAGATTATCAGTGGTGCCAAGAATC
TTAACCCCAAGTCGCCCGTGGAGGTCAAGGCGCTAGGCGGGAAGAGGGGA
GACGACATTCGATTGTCATGCTGCACACGGGCCTCGGGGGACGTGGTGAT
TAAGACGAAGCCTTGACTGATTGACTGACTAGCTTTTCAATGACTAAGAA
GATATGACCGGGAAGGCACCAACGATGATGACTTTGCAGGAGGTTGGGGT
CCACAAGAGCAATACCCAAAACGATGTGAGGAATGATGATAAAGAAGGAA
TCACGTACTGCCGAAGGAGACGGAGGAGGGGGGAAAGAAGAGATCGGAAA
GGAGAGAAAAGAAGTAGAGATCATATACTGATCTGTATTGTGTCACTTCC
TTTTTGTAGAATGGGCGGAAAGGCTTATGTGTGTGAGAGTGAGTGTGCGT
TGAGCGTGTGTGCGTGTGCCCCGGTGCCCCGACTGATCTTTTGTTCAAGT
GAAAAGCTGGTCTTCAAAGCACGCGTGTATCTCTTTTTCCTAGACCAGTG
CGAAGCAAGCTATCAAAAAAGTGGAAAAGAATAATGACGAAAAAGAAAGG
GGGGGAAACT
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protein sequence of jgi.p|Nanoce1779_2|584168

>mRNA_3014-protein ID=mRNA_3014-protein|Name=jgi.p|Nanoce1779_2|584168|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MTTMLRLSVLLVLLSMVASFLVPAPLPAMTSVPQQTRRGKMMMLGMFGKK
SAGGKKKTFTVTVQQKFYKDAELEVDAGAPVNLRKELMKNKIDIYPLQGK
IYNCGGGGQCGTCAVQIISGAKNLNPKSPVEVKALGGKRGDDIRLSCCTR
ASGDVVIKTKP*
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mRNA from alignment at scaffold_7:462177..463329+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3014 ID=mRNA_3014|Name=jgi.p|Nanoce1779_2|584168|organism=Nannochloropsis oceanica|type=mRNA|length=1153bp|location=Sequence derived from alignment at scaffold_7:462177..463329+ (Nannochloropsis oceanica)
ACAGGCAGATCTTTCCTCTCCCTGCACATCATGACTACCATGCTTCGCCT
GTCCGTTCTCCTGGTCCTGCTTTCCATGGTAGCCTCCTTCCTAGTCCCCG
CTCCCTTGCCGGCCATGACCTCTGTGCCACAGCAAACTCGGCGAGGGAAG
ATGATGATGCTGGGCATGTTTGGGAAGAAGTCGGCCGGAGGCAAAAAAAA
GACATTTACGGTGACGGTGCAACAGAAGTTTTACAAGGACGCGGAGCTGG
AAGTAGATGCGGGCGCACCAGTGAACCTGCGCAAGGAGCTCATGAAGAAT
AAGATTGACATCTACCCGTTGCAAGGCAAGATCTACAACTGCGGCGGAGG
GGGCCAGTGCGGTACCTGTGCCGTGCAGATTATCAGTGGTGCCAAGAATC
TTAAGTAAGTCTTGAGTAGTGAAGATGGTAGGGGCGGGTCTGGAATGCTC
TTCCCGTGCAAGAAGGTTTTTGTTCAATCATTTACTCCCCGATCTCTTTC
CTTTGTTTGAGCATATTCAATATATTCAATTCTTCTCGCATTTGCCTTAC
GACTCATTTCGTTTCTTTCTAAATGTTAAATTTCATGCAAAAACTAGCCC
CAAGTCGCCCGTGGAGGTCAAGGCGCTAGGCGGGAAGAGGGGAGACGACA
TTCGATTGTCATGCTGCACACGGGCCTCGGGGGACGTGGTGATTAAGACG
AAGCCTTGACTGATTGACTGACTAGCTTTTCAATGACTAAGAAGATATGA
CCGGGAAGGCACCAACGATGATGACTTTGCAGGAGGTTGGGGTCCACAAG
AGCAATACCCAAAACGATGTGAGGAATGATGATAAAGAAGGAATCACGTA
CTGCCGAAGGAGACGGAGGAGGGGGGAAAGAAGAGATCGGAAAGGAGAGA
AAAGAAGTAGAGATCATATACTGATCTGTATTGTGTCACTTCCTTTTTGT
AGAATGGGCGGAAAGGCTTATGTGTGTGAGAGTGAGTGTGCGTTGAGCGT
GTGTGCGTGTGCCCCGGTGCCCCGACTGATCTTTTGTTCAAGTGAAAAGC
TGGTCTTCAAAGCACGCGTGTATCTCTTTTTCCTAGACCAGTGCGAAGCA
AGCTATCAAAAAAGTGGAAAAGAATAATGACGAAAAAGAAAGGGGGGGAA
ACT
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Coding sequence (CDS) from alignment at scaffold_7:462177..463329+

>mRNA_3014 ID=mRNA_3014|Name=jgi.p|Nanoce1779_2|584168|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_7:462177..463329+ (Nannochloropsis oceanica)
ATGACTACCATGCTTCGCCTGTCCGTTCTCCTGGTCCTGCTTTCCATGGT
AGCCTCCTTCCTAGTCCCCGCTCCCTTGCCGGCCATGACCTCTGTGCCAC
AGCAAACTCGGCGAGGGAAGATGATGATGCTGGGCATGTTTGGGAAGAAG
TCGGCCGGAGGCAAAAAAAAGACATTTACGGTGACGGTGCAACAGAAGTT
TTACAAGGACGCGGAGCTGGAAGTAGATGCGGGCGCACCAGTGAACCTGC
GCAAGGAGCTCATGAAGAATAAGATTGACATCTACCCGTTGCAAGGCAAG
ATCTACAACTGCGGCGGAGGGGGCCAGTGCGGTACCTGTGCCGTGCAGAT
TATCAGTGGTGCCAAGAATCTTAACCCCAAGTCGCCCGTGGAGGTCAAGG
CGCTAGGCGGGAAGAGGGGAGACGACATTCGATTGTCATGCTGCACACGG
GCCTCGGGGGACGTGGTGATTAAGACGAAGCCTTGAATGACTACCATGCT
TCGCCTGTCCGTTCTCCTGGTCCTGCTTTCCATGGTAGCCTCCTTCCTAG
TCCCCGCTCCCTTGCCGGCCATGACCTCTGTGCCACAGCAAACTCGGCGA
GGGAAGATGATGATGCTGGGCATGTTTGGGAAGAAGTCGGCCGGAGGCAA
AAAAAAGACATTTACGGTGACGGTGCAACAGAAGTTTTACAAGGACGCGG
AGCTGGAAGTAGATGCGGGCGCACCAGTGAACCTGCGCAAGGAGCTCATG
AAGAATAAGATTGACATCTACCCGTTGCAAGGCAAGATCTACAACTGCGG
CGGAGGGGGCCAGTGCGGTACCTGTGCCGTGCAGATTATCAGTGGTGCCA
AGAATCTTAACCCCAAGTCGCCCGTGGAGGTCAAGGCGCTAGGCGGGAAG
AGGGGAGACGACATTCGATTGTCATGCTGCACACGGGCCTCGGGGGACGT
GGTGATTAAGACGAAGCCTTGA
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Synonyms
Publications