jgi.p|Nanoce1779_2|669826, mRNA_3013 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|669826
Unique NamemRNA_3013
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1212
Alignment locationscaffold_7:460741..461952 -

Link to JBrowse

Properties
Property NameValue
TranscriptId669912
TrackFilteredModels2
ProteinId669826
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:460741..461952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669826gene_3013Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669826mRNA_3013-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3013CDS_3013Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3013 ID=mRNA_3013|Name=jgi.p|Nanoce1779_2|669826|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp
AACGTAGTGCGTACACCCACTCACAGATCCACATCGCCTTGTTGCAAACT
TGCGTGTGTGGTGTTTGTCGTGACTTGACACGAGAAGAGGCGAAGTCTCT
CCGCTCCTCTCGTTCGTTCGTTCGTCTCGCGTTCTGAGGGGCCAACGCAG
GCACATGTACCCACCCCTTTGTACTTACCCGGCTATTTATCACCTGCCTG
GCTCTTTGCTCAATACACCTTACTCTCCTCCTCCCTCCCTCTCCCCCCTT
CAGCCATACCACAGGAGTATTGATAGTCACGACGCAACGCCCTATGCGGT
ACATTAGCACCCGAGGAGAATCTTCCTCCTCTTCGTCGCGCCTCACATTT
CGTGAAGCCGTGCTAGCAGGATGGGCTCCGGATGGAGGCATGCTCCTACC
AGAGCGCATCCCGCAGGTGACGCCTGCGATGCTGGAAGAATGGAGAGGCC
TCTCATATCCCCAATTAGTCACCAGGCTCTTGGCTTTGTTTGTGACGGAC
GACGGGGACGAGGACGACGGGAAGACCGAAGAGGAAGTGCCATTGGAAGA
GATTGTGGACGCCAGCTTTGCCTCCTTTGCTACGCCCGAGGTGGTGACAT
TCAAGGCCTTGCCGTGGCCTTCGTCCTCGTCGTCGTCCTCCTCCTCCTCC
TCTTCCTCCTCTTCCTCCTCCTCCTCCTGCTCCTCCTCCCCCTCCTCTGC
TCCCTCCCTCTATATCGCCGAATTGTTCCACGGGCCCTCCTTGGCATTCA
AAGACTTAGGCATGCAAGTCTTAGCTCATGTCCTCAACTTCTACCTCTCC
AAGCAACACCAAAAAATGACCTTTCTAGTTGGCACATCAGGAGACACGGG
GCCTTCAGCAGCAGCGGCAGTTAAGGGCAAAGAGAACATGAGGGTGATAG
TATTATACCCCCTCGGGAGGGTCAGTCCCTTGCAGGAAGCTCAGATGCTG
GCCGCGCATGAGGGAGGGGGAGGGGGAGGGGGAGGGGGGAGGAAGAAGGA
AGGGAAGAAGAGGGGGGAACGTGCGGGTGGTGGCAGTGGAGGGGACAAGC
GATGATCTGGACGAACCTATCGCCGAATTGTTTCAGGATAAAGATTATAG
GTATGGCCTGTCTGCTTGTCTTTTCCTCCCTCCCTCCTTCCCTCCCTTCC
TCGCTCCTTCCCTCGCTCTCTACGCGCTTGACAGCGCGTGCTATTCTCTC
CCTCGATCCCTC
back to top

protein sequence of jgi.p|Nanoce1779_2|669826

>mRNA_3013-protein ID=mRNA_3013-protein|Name=jgi.p|Nanoce1779_2|669826|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MRYISTRGESSSSSSRLTFREAVLAGWAPDGGMLLPERIPQVTPAMLEEW
RGLSYPQLVTRLLALFVTDDGDEDDGKTEEEVPLEEIVDASFASFATPEV
VTFKALPWPSSSSSSSSSSSSSSSSSSSCSSSPSSAPSLYIAELFHGPSL
AFKDLGMQVLAHVLNFYLSKQHQKMTFLVGTSGDTGPSAAAAVKGKENMR
VIVLYPLGRVSPLQEAQMLAAHEGGGGGGGGGRKKEGKKRGERAGGGSGG
DKR*
back to top

mRNA from alignment at scaffold_7:460741..461952-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3013 ID=mRNA_3013|Name=jgi.p|Nanoce1779_2|669826|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp|location=Sequence derived from alignment at scaffold_7:460741..461952- (Nannochloropsis oceanica)
AACGTAGTGCGTACACCCACTCACAGATCCACATCGCCTTGTTGCAAACT
TGCGTGTGTGGTGTTTGTCGTGACTTGACACGAGAAGAGGCGAAGTCTCT
CCGCTCCTCTCGTTCGTTCGTTCGTCTCGCGTTCTGAGGGGCCAACGCAG
GCACATGTACCCACCCCTTTGTACTTACCCGGCTATTTATCACCTGCCTG
GCTCTTTGCTCAATACACCTTACTCTCCTCCTCCCTCCCTCTCCCCCCTT
CAGCCATACCACAGGAGTATTGATAGTCACGACGCAACGCCCTATGCGGT
ACATTAGCACCCGAGGAGAATCTTCCTCCTCTTCGTCGCGCCTCACATTT
CGTGAAGCCGTGCTAGCAGGATGGGCTCCGGATGGAGGCATGCTCCTACC
AGAGCGCATCCCGCAGGTGACGCCTGCGATGCTGGAAGAATGGAGAGGCC
TCTCATATCCCCAATTAGTCACCAGGCTCTTGGCTTTGTTTGTGACGGAC
GACGGGGACGAGGACGACGGGAAGACCGAAGAGGAAGTGCCATTGGAAGA
GATTGTGGACGCCAGCTTTGCCTCCTTTGCTACGCCCGAGGTGGTGACAT
TCAAGGCCTTGCCGTGGCCTTCGTCCTCGTCGTCGTCCTCCTCCTCCTCC
TCTTCCTCCTCTTCCTCCTCCTCCTCCTGCTCCTCCTCCCCCTCCTCTGC
TCCCTCCCTCTATATCGCCGAATTGTTCCACGGGCCCTCCTTGGCATTCA
AAGACTTAGGCATGCAAGTCTTAGCTCATGTCCTCAACTTCTACCTCTCC
AAGCAACACCAAAAAATGACCTTTCTAGTTGGCACATCAGGAGACACGGG
GCCTTCAGCAGCAGCGGCAGTTAAGGGCAAAGAGAACATGAGGGTGATAG
TATTATACCCCCTCGGGAGGGTCAGTCCCTTGCAGGAAGCTCAGATGCTG
GCCGCGCATGAGGGAGGGGGAGGGGGAGGGGGAGGGGGGAGGAAGAAGGA
AGGGAAGAAGAGGGGGGAACGTGCGGGTGGTGGCAGTGGAGGGGACAAGC
GATGATCTGGACGAACCTATCGCCGAATTGTTTCAGGATAAAGATTATAG
GTATGGCCTGTCTGCTTGTCTTTTCCTCCCTCCCTCCTTCCCTCCCTTCC
TCGCTCCTTCCCTCGCTCTCTACGCGCTTGACAGCGCGTGCTATTCTCTC
CCTCGATCCCTC
back to top

Coding sequence (CDS) from alignment at scaffold_7:460741..461952-

>mRNA_3013 ID=mRNA_3013|Name=jgi.p|Nanoce1779_2|669826|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_7:460741..461952- (Nannochloropsis oceanica)
ATGCGGTACATTAGCACCCGAGGAGAATCTTCCTCCTCTTCGTCGCGCCT
CACATTTCGTGAAGCCGTGCTAGCAGGATGGGCTCCGGATGGAGGCATGC
TCCTACCAGAGCGCATCCCGCAGGTGACGCCTGCGATGCTGGAAGAATGG
AGAGGCCTCTCATATCCCCAATTAGTCACCAGGCTCTTGGCTTTGTTTGT
GACGGACGACGGGGACGAGGACGACGGGAAGACCGAAGAGGAAGTGCCAT
TGGAAGAGATTGTGGACGCCAGCTTTGCCTCCTTTGCTACGCCCGAGGTG
GTGACATTCAAGGCCTTGCCGTGGCCTTCGTCCTCGTCGTCGTCCTCCTC
CTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTGCTCCTCCTCCCCCT
CCTCTGCTCCCTCCCTCTATATCGCCGAATTGTTCCACGGGCCCTCCTTG
GCATTCAAAGACTTAGGCATGCAAGTCTTAGCTCATGTCCTCAACTTCTA
CCTCTCCAAGCAACACCAAAAAATGACCTTTCTAGTTGGCACATCAGGAG
ACACGGGGCCTTCAGCAGCAGCGGCAGTTAAGGGCAAAGAGAACATGAGG
GTGATAGTATTATACCCCCTCGGGAGGGTCAGTCCCTTGCAGGAAGCTCA
GATGCTGGCCGCGCATGAGGGAGGGGGAGGGGGAGGGGGAGGGGGGAGGA
AGAAGGAAGGGAAGAAGAGGGGGGAACGTGCGGGTGGTGGCAGTGGAGGG
GACAAGCGATGA
back to top
Synonyms
Publications