jgi.p|Nanoce1779_2|584140, mRNA_3012 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584140
Unique NamemRNA_3012
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1672
Alignment locationscaffold_7:453993..455664 -

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Properties
Property NameValue
TranscriptId584226
TrackFilteredModels2
ProteinId584140
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:453993..455664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584140gene_3012Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584140mRNA_3012-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3012CDS_3012Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3012 ID=mRNA_3012|Name=jgi.p|Nanoce1779_2|584140|organism=Nannochloropsis oceanica|type=mRNA|length=1672bp
GGCGCTCTTGTCCCCCTCGGCGGGTGCCATGATCGACCGCGCCAATCGTC
TGCGTGCCGTCGTGCTCGTGACGACGGCACAAAATGCGTGTGTTTTGGGT
TGTTGTGCGTGCTTCGCTGTCCTGCTTCGGGGCTATCTGCCAACATACAG
TCGAGGTTGGTCCCTATGCATTGCTTTGGTGCATGTTAGCGGTGCGTTGA
ACGTCCTTTTTCAAGGCCTCAGCAACATCATTTTAGAAAGGGACTGGGTC
GTGGTCCTAGCCGATGGTGACAACGCCTGGCTCCGATCCATCACTGCAAA
CTTTAAATCGATCGACTTGAGCTGCAATTTAGTTGCGCCATTTTTTGTTT
CTCTAATCCAAATAGCGGGCGGTGTGGAAGTCCTTGCTTGGGTTTTTTCA
GCTGGTAATTTGGTCATGATCTACTCGCAGCATACGGCGCTACACCGCAT
TTATCGCGACGTCCCAGCGCTGGCTTTGAAGGACGAAGGAGGCGAGGGCG
AAAGTGGACGTTGTGCAAGGCTGAAAACTGACAACGATAATCATATAGAG
GACGAGGCTTTGGGTTCGAACGCTCGCGACGGCGCTCCTCCATCTTTGCT
CCTCGCATGCATGAGCAAGCGTACTGGTGGGGCGTTCCGCAATTTGTTTT
CGCATGCCCACACGTACGCAAAACAGCGCGCGTTCACTCCCGGCTTGGCT
CTCGCAATGTTGTACCTAACGGTGCTAACTTTTCACAGCACTATGCTTGC
TTACCTTTTGAAGCGGGGCCTGAGTGTTACTTTCGTTGCGTTGGCGCAGG
GGGGAAGCTCCGCGATGGGTGTTCTAGGCACCTTCTGCTATGAACGGGCT
GCTGCTCGGGTAGGAACAATAACGGTGGGTCTCCTGGCCATATGGCAGCA
GGTAGCCTGTCTGACTGTTGCGGTGGGCGCTTTGTTTTACCCAAAATGGC
GGGGGGATCATACAAGTAATAAAAATGTTGAAGACGACGCCAAGACGGCG
CAGGCGGCGCTCTGGTTTTTCATAATGGGTATCGGCCTCTCCCGTTTTGG
TCTATATGCCTTTGATGTGGCCGCCGCGCAAATATCTCAATACATGGTTG
AGGAGAATGCGAGAGGGGCCGTCGGGGGATTTCAACGCACTTTGGAGTCT
GTTTTTGAGCTGTTGTCGTACTGCTTGGTCTTGTGGCGACCCCACCTCGA
ACAATTCCCCTCTTTGGCTGCCATTTCTTACATTCAAGTTATTGCCGCCG
CCTCTTTTTTTACTGTCTTTGCGTACAGCATAAATGGACGGCTATCAGGT
CTAGATCCCGAGCAAAGGACTCAGGCTGGGGTCGGCGAGATGGACAAGCA
TGGCAGCGGCAGCACTAGCAGCGGCGGTAGCGTCCTTGATTTAGGAGAGA
GTGACGCATTGGTGGATTCTCCCTTCGCTCCCTCGCATCATTTTAAAGTG
CCGTTGCATTCTGGAAATCGTTTTGTGCTTTTTAATCCTTCTCTCACGTC
CAGGCAGGGCGAGCGGGAGCGGGAGGGACAGGTAATTGAGGGGGTGAAGG
CAAGGAGTGTTAACGATGACAATCAAGCTATTGAACCCAGACAAGAATGA
GACAAATTGCGCGCGTTTACACCAACCTCTTGTACATTCACCGAAGAAGT
AAAACATGAAAATTACGGTATA
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protein sequence of jgi.p|Nanoce1779_2|584140

>mRNA_3012-protein ID=mRNA_3012-protein|Name=jgi.p|Nanoce1779_2|584140|organism=Nannochloropsis oceanica|type=polypeptide|length=524bp
MIDRANRLRAVVLVTTAQNACVLGCCACFAVLLRGYLPTYSRGWSLCIAL
VHVSGALNVLFQGLSNIILERDWVVVLADGDNAWLRSITANFKSIDLSCN
LVAPFFVSLIQIAGGVEVLAWVFSAGNLVMIYSQHTALHRIYRDVPALAL
KDEGGEGESGRCARLKTDNDNHIEDEALGSNARDGAPPSLLLACMSKRTG
GAFRNLFSHAHTYAKQRAFTPGLALAMLYLTVLTFHSTMLAYLLKRGLSV
TFVALAQGGSSAMGVLGTFCYERAAARVGTITVGLLAIWQQVACLTVAVG
ALFYPKWRGDHTSNKNVEDDAKTAQAALWFFIMGIGLSRFGLYAFDVAAA
QISQYMVEENARGAVGGFQRTLESVFELLSYCLVLWRPHLEQFPSLAAIS
YIQVIAAASFFTVFAYSINGRLSGLDPEQRTQAGVGEMDKHGSGSTSSGG
SVLDLGESDALVDSPFAPSHHFKVPLHSGNRFVLFNPSLTSRQGEREREG
QVIEGVKARSVNDDNQAIEPRQE*
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mRNA from alignment at scaffold_7:453993..455664-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3012 ID=mRNA_3012|Name=jgi.p|Nanoce1779_2|584140|organism=Nannochloropsis oceanica|type=mRNA|length=1672bp|location=Sequence derived from alignment at scaffold_7:453993..455664- (Nannochloropsis oceanica)
GGCGCTCTTGTCCCCCTCGGCGGGTGCCATGATCGACCGCGCCAATCGTC
TGCGTGCCGTCGTGCTCGTGACGACGGCACAAAATGCGTGTGTTTTGGGT
TGTTGTGCGTGCTTCGCTGTCCTGCTTCGGGGCTATCTGCCAACATACAG
TCGAGGTTGGTCCCTATGCATTGCTTTGGTGCATGTTAGCGGTGCGTTGA
ACGTCCTTTTTCAAGGCCTCAGCAACATCATTTTAGAAAGGGACTGGGTC
GTGGTCCTAGCCGATGGTGACAACGCCTGGCTCCGATCCATCACTGCAAA
CTTTAAATCGATCGACTTGAGCTGCAATTTAGTTGCGCCATTTTTTGTTT
CTCTAATCCAAATAGCGGGCGGTGTGGAAGTCCTTGCTTGGGTTTTTTCA
GCTGGTAATTTGGTCATGATCTACTCGCAGCATACGGCGCTACACCGCAT
TTATCGCGACGTCCCAGCGCTGGCTTTGAAGGACGAAGGAGGCGAGGGCG
AAAGTGGACGTTGTGCAAGGCTGAAAACTGACAACGATAATCATATAGAG
GACGAGGCTTTGGGTTCGAACGCTCGCGACGGCGCTCCTCCATCTTTGCT
CCTCGCATGCATGAGCAAGCGTACTGGTGGGGCGTTCCGCAATTTGTTTT
CGCATGCCCACACGTACGCAAAACAGCGCGCGTTCACTCCCGGCTTGGCT
CTCGCAATGTTGTACCTAACGGTGCTAACTTTTCACAGCACTATGCTTGC
TTACCTTTTGAAGCGGGGCCTGAGTGTTACTTTCGTTGCGTTGGCGCAGG
GGGGAAGCTCCGCGATGGGTGTTCTAGGCACCTTCTGCTATGAACGGGCT
GCTGCTCGGGTAGGAACAATAACGGTGGGTCTCCTGGCCATATGGCAGCA
GGTAGCCTGTCTGACTGTTGCGGTGGGCGCTTTGTTTTACCCAAAATGGC
GGGGGGATCATACAAGTAATAAAAATGTTGAAGACGACGCCAAGACGGCG
CAGGCGGCGCTCTGGTTTTTCATAATGGGTATCGGCCTCTCCCGTTTTGG
TCTATATGCCTTTGATGTGGCCGCCGCGCAAATATCTCAATACATGGTTG
AGGAGAATGCGAGAGGGGCCGTCGGGGGATTTCAACGCACTTTGGAGTCT
GTTTTTGAGCTGTTGTCGTACTGCTTGGTCTTGTGGCGACCCCACCTCGA
ACAATTCCCCTCTTTGGCTGCCATTTCTTACATTCAAGTTATTGCCGCCG
CCTCTTTTTTTACTGTCTTTGCGTACAGCATAAATGGACGGCTATCAGGT
CTAGATCCCGAGCAAAGGACTCAGGCTGGGGTCGGCGAGATGGACAAGCA
TGGCAGCGGCAGCACTAGCAGCGGCGGTAGCGTCCTTGATTTAGGAGAGA
GTGACGCATTGGTGGATTCTCCCTTCGCTCCCTCGCATCATTTTAAAGTG
CCGTTGCATTCTGGAAATCGTTTTGTGCTTTTTAATCCTTCTCTCACGTC
CAGGCAGGGCGAGCGGGAGCGGGAGGGACAGGTAATTGAGGGGGTGAAGG
CAAGGAGTGTTAACGATGACAATCAAGCTATTGAACCCAGACAAGAATGA
GACAAATTGCGCGCGTTTACACCAACCTCTTGTACATTCACCGAAGAAGT
AAAACATGAAAATTACGGTATA
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Coding sequence (CDS) from alignment at scaffold_7:453993..455664-

>mRNA_3012 ID=mRNA_3012|Name=jgi.p|Nanoce1779_2|584140|organism=Nannochloropsis oceanica|type=CDS|length=1572bp|location=Sequence derived from alignment at scaffold_7:453993..455664- (Nannochloropsis oceanica)
ATGATCGACCGCGCCAATCGTCTGCGTGCCGTCGTGCTCGTGACGACGGC
ACAAAATGCGTGTGTTTTGGGTTGTTGTGCGTGCTTCGCTGTCCTGCTTC
GGGGCTATCTGCCAACATACAGTCGAGGTTGGTCCCTATGCATTGCTTTG
GTGCATGTTAGCGGTGCGTTGAACGTCCTTTTTCAAGGCCTCAGCAACAT
CATTTTAGAAAGGGACTGGGTCGTGGTCCTAGCCGATGGTGACAACGCCT
GGCTCCGATCCATCACTGCAAACTTTAAATCGATCGACTTGAGCTGCAAT
TTAGTTGCGCCATTTTTTGTTTCTCTAATCCAAATAGCGGGCGGTGTGGA
AGTCCTTGCTTGGGTTTTTTCAGCTGGTAATTTGGTCATGATCTACTCGC
AGCATACGGCGCTACACCGCATTTATCGCGACGTCCCAGCGCTGGCTTTG
AAGGACGAAGGAGGCGAGGGCGAAAGTGGACGTTGTGCAAGGCTGAAAAC
TGACAACGATAATCATATAGAGGACGAGGCTTTGGGTTCGAACGCTCGCG
ACGGCGCTCCTCCATCTTTGCTCCTCGCATGCATGAGCAAGCGTACTGGT
GGGGCGTTCCGCAATTTGTTTTCGCATGCCCACACGTACGCAAAACAGCG
CGCGTTCACTCCCGGCTTGGCTCTCGCAATGTTGTACCTAACGGTGCTAA
CTTTTCACAGCACTATGCTTGCTTACCTTTTGAAGCGGGGCCTGAGTGTT
ACTTTCGTTGCGTTGGCGCAGGGGGGAAGCTCCGCGATGGGTGTTCTAGG
CACCTTCTGCTATGAACGGGCTGCTGCTCGGGTAGGAACAATAACGGTGG
GTCTCCTGGCCATATGGCAGCAGGTAGCCTGTCTGACTGTTGCGGTGGGC
GCTTTGTTTTACCCAAAATGGCGGGGGGATCATACAAGTAATAAAAATGT
TGAAGACGACGCCAAGACGGCGCAGGCGGCGCTCTGGTTTTTCATAATGG
GTATCGGCCTCTCCCGTTTTGGTCTATATGCCTTTGATGTGGCCGCCGCG
CAAATATCTCAATACATGGTTGAGGAGAATGCGAGAGGGGCCGTCGGGGG
ATTTCAACGCACTTTGGAGTCTGTTTTTGAGCTGTTGTCGTACTGCTTGG
TCTTGTGGCGACCCCACCTCGAACAATTCCCCTCTTTGGCTGCCATTTCT
TACATTCAAGTTATTGCCGCCGCCTCTTTTTTTACTGTCTTTGCGTACAG
CATAAATGGACGGCTATCAGGTCTAGATCCCGAGCAAAGGACTCAGGCTG
GGGTCGGCGAGATGGACAAGCATGGCAGCGGCAGCACTAGCAGCGGCGGT
AGCGTCCTTGATTTAGGAGAGAGTGACGCATTGGTGGATTCTCCCTTCGC
TCCCTCGCATCATTTTAAAGTGCCGTTGCATTCTGGAAATCGTTTTGTGC
TTTTTAATCCTTCTCTCACGTCCAGGCAGGGCGAGCGGGAGCGGGAGGGA
CAGGTAATTGAGGGGGTGAAGGCAAGGAGTGTTAACGATGACAATCAAGC
TATTGAACCCAGACAAGAATGA
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Synonyms
Publications