jgi.p|Nanoce1779_2|392649, mRNA_3010 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|392649
Unique Name	mRNA_3010
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1753
Alignment location	scaffold_7:450239..452544 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	392735
Track	FilteredModels2
ProteinId	392649

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:450239..452544 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|392649	gene_3010	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|392649	mRNA_3010-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3010	CDS_3010	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:450239..452544-
coding sequence from alignment at scaffold_7:450239..452544-

mRNA sequence

>mRNA_3010 ID=mRNA_3010|Name=jgi.p|Nanoce1779_2|392649|organism=Nannochloropsis oceanica|type=mRNA|length=1753bp
GTCAACCCCCTCCTGACTCTCTTGTTTTCGACTTTAGCCATCACCGCACT
ATGACTCAACCCTTAGTGTGTCGATAGCGACTGAAAAGTGCAGCCCCCCT
GTCTTTTCAGCGCCGACACAAAGAATTGTGCCCAATCTTTTGGGTGATGT
GCGGATGACGTACAATAGTGAAGTCCCTCCCGCTTACCTCTATCACCCCA
CCCTTCAAAACGCTACAAACGACAGCGCGACTCCATGGTGATGAAAATCG
TCTGCAGTACACTATTTTTCGTTTTGTGGGCCTCCATAGGCGTCCAGGCC
TTTATGCCTCCTCAAACCCGACTTGTCGTCCGCTCAAGCTGCAGCAGCAG
GTCAAAAATGTTAGCCGCCGCAGCCACGACCACAACCTCTCCAAGCAACA
GCTTTGTGGGATCGACTTTGACGGATATACAGCTGGCCTATGAAGCGGCT
GGTAAATTCTTCGACAGCACGGAGGGGATCAAGTTCAAGCAAACTAGTGG
TGGCGTTAACAATGTGGGGATGTACGTGAGCTTCCCGGACGGGCGACATT
ATGTTATGAGGATTTATAACAACGGTTTCAACCACGCGCGCGTCCATTAC
GAGCACACTATTCTTAAGCAACTGAACGAACAAAAACTTAGCTTTGCCAT
TCCGAAAGCCTTGCCCTGCAAGGACGATCCAAGCATGACCTACGCTGTGC
TTTCCAATGGTGCCGATTCTTGCGTGTTCGAAACAATCCCTGGTGAGCTG
CCTAAGCTCACATGCGTGCAAGATATCGGTAGGGCCTCAGGCGAGCTATC
GGAGGCCATCCAGAAGGTAGACGTGAGTCACCTGGAGTGCCCGACCGCAC
CGTACTCACAGTTTTACGACGTCCACCATGCAATCACTCGGGAGTCATTT
TACCGAGAAATGGCTGGGCCTGATTTCGATGCTATTCGTGCCAGCGCCAC
TAAAGCTGTGGCCTACATTGAGGATATGGAACGAAAACTCGAGTCCTTCG
AGGCAAGGAAGCTACCCAAGAATCTGCTGCACGCTGATTTACATTATGAT
AATGTCCTCGTCAAGGACGGCAAGGTCACCGGCCTGCTCGATTTCGAGTT
TGCCGCCATCGACTACAGGGCAATGGAACTGGCTGTCTGTTTGAGTAAAT
ATGCGGGGGAGTCCAAAGCAAGAGATTATTTTGACGATTTCATAAAAGGG
TATATGCAGCATGCTCACTTGATGGACGAGGAGATTGAAGCCATTCCCAC
ACTTGTGAACTTACGAATATTGAGCAATGTCGCTTATTTTGTTGGGAGAA
AGTTAGCAGGTGAGGATGATATTGCGAGTATAACCACAAGATTGGAAAAC
TATATGACGAGGGTTGATTGGGTGTATCTCAATGCTGAAGCCATCATAGG
CAAATTGAAGGAGGAGGCGAAGGCGGCTAGGTAGTAAAGATACAAGTTAG
TTGCATTCGGGTGTGGGGTGAAGCGGAATGCTCTGATTTTGCTGTCCCGC
ATGACTCAGATGCATAAAGCAAGATAACTCACAACATCAAGTGTTTCCAG
GCGAGTGCGCACTGTAGTCTTACTCCTTACTTTTCCTTATCTTTGTCACG
TTACTCGCAGCTGTTTTGTCATCTCAGTCAGTTCATCATCACAAAATCAT
TCTTGGGGGGGTTCGAACAGGAACTAAGACGTCCCCTTGCGGAAATCGAA
TTTAGGGTATTGAACACGCATTTGGGCCTTCCTTGTCGCCCCTTTCCTTT
CCC

protein sequence of jgi.p|Nanoce1779_2|392649

>mRNA_3010-protein ID=mRNA_3010-protein|Name=jgi.p|Nanoce1779_2|392649|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MVMKIVCSTLFFVLWASIGVQAFMPPQTRLVVRSSCSSRSKMLAAAATTT
TSPSNSFVGSTLTDIQLAYEAAGKFFDSTEGIKFKQTSGGVNNVGMYVSF
PDGRHYVMRIYNNGFNHARVHYEHTILKQLNEQKLSFAIPKALPCKDDPS
MTYAVLSNGADSCVFETIPGELPKLTCVQDIGRASGELSEAIQKVDVSHL
ECPTAPYSQFYDVHHAITRESFYREMAGPDFDAIRASATKAVAYIEDMER
KLESFEARKLPKNLLHADLHYDNVLVKDGKVTGLLDFEFAAIDYRAMELA
VCLSKYAGESKARDYFDDFIKGYMQHAHLMDEEIEAIPTLVNLRILSNVA
YFVGRKLAGEDDIASITTRLENYMTRVDWVYLNAEAIIGKLKEEAKAAR*

mRNA from alignment at scaffold_7:450239..452544-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3010 ID=mRNA_3010|Name=jgi.p|Nanoce1779_2|392649|organism=Nannochloropsis oceanica|type=mRNA|length=2306bp|location=Sequence derived from alignment at scaffold_7:450239..452544- (Nannochloropsis oceanica)
GTCAACCCCCTCCTGACTCTCTTGTTTTCGACTTTAGCCATCACCGCACT
ATGACTCAACCCTTAGTGTGTCGATAGCGACTGAAAAGTGCAGCCCCCCT
GTCTTTTCAGCGCCGACACAAAGAATTGTGCCCAATCTTTTGGGTGATGT
GCGGATGACGTACAATAGTGAAGTCCCTCCCGCTTACCTCTATCACCCCA
CCCTTCAAAACGCTACAAACGACAGCGCGACTCCATGGTGATGAAAATCG
TCTGCAGTACACTATTTTTCGTTTTGTGGGCCTCCATAGGCGTCCAGGCC
TTTATGCCTCCTCAAACCCGACTTGTCGTCCGCTCAAGCTGCAGCAGCAG
GTCAAAAATGTTAGCCGCCGCAGCCACGACCACAACCTCTCCAAGCAACA
GCTTTGTGGGATCGACTTTGACGGATATACAGCTGGCCTATGAAGCGGCT
GGTAAATTCTTCGACAGCACGGAGGGGATCAAGTTCAAGCAAACTAGTGG
TGGCGTTAACAATGTAAGGAGAAGCAGAAGATCGATTAAGCCGACGGATC
ATATCATGCCGAATCTTACGTGTAACACGCATCATTTTAGGTGGGGATGT
ACGTGAGCTTCCCGGACGGGCGACATTATGTTATGAGGTAAGAATTAACA
ATTCCTCTGCCTCATCGTGTATCACGCGTTGAGTTAGGAAAACCGGTTTC
CTCAACCTGCCGCCTCCTGAACTCGGTCGTAGAGACCGGAGCTGGCGCCG
AGAATTTCGCAAGCAAAAGACATGAACAACATAGAGGAAAAGCAGTAATG
TTTCCCCCTTCCATTCTGCTGAGCCCCGCCTCTCCCCCCCCACAAAACTG
AGGTTTTGTCCGTTCAGTTGCTTAAGAATATTGTGCTCGTAATGGACGCG
CGCATGGTTGAAACCGTTGTCATAAATTCTCACAATTTTTACCAAACTTT
GCTCTCTCTTCCATCCGCCTGCCATCTTTAAGGATTTATAACAACGGTTT
CAACCACGCGCGCGTCCATTACGAGCACACTATTCTTAAGCAACTGAACG
AACAAAAACTTAGCTTTGCCATTCCGAAAGCCTTGCCCTGCAAGGACGAT
CCAAGCATGACCTACGCTGTGCTTTCCAATGGTGCCGATTCTTGCGTGTT
CGAAACAATCCCTGGTGAGCTGCCTAAGCTCACATGCGTGCAAGATATCG
GTAGGGCCTCAGGCGAGCTATCGGAGGCCATCCAGAAGGTAGACGTGAGT
CACCTGGAGTGCCCGACCGCACCGTACTCACAGTTTTACGACGTCCACCA
TGCAATCACTCGGGAGTCATTTTACCGAGAAATGGCTGGGCCTGATTTCG
ATGCTATTCGTGCCAGCGCCACTAAAGCTGTGGCCTACATTGAGGATATG
GAACGAAAACTCGAGTCCTTCGAGGCAAGGAAGCTACCCAAGAATCTGCT
GCACGCTGATTTACATTATGATAAGTAAGTGCATGGAATGGTTGTGGAGG
TCATTTTCTTTCTTTCCAATAATCAGGCTTCTCACTTCTCATCATGCGCA
CAATGATTGACCTTTCACTATATGTCCATTTTCTCATCCCTCCCCTGCTT
CCTAGTGTCCTCGTCAAGGACGGCAAGGTCACCGGCCTGCTCGATTTCGA
GTTTGCCGCCATCGACTACAGGGCAATGGAACTGGCTGTCTGTTTGAGTA
AATATGCGGGGGAGTCCAAAGCAAGAGATTATTTTGACGATTTCATAAAA
GGGTATATGCAGCATGCTCACTTGATGGACGAGGAGATTGAAGCCATTCC
CACACTTGTGAACTTACGAATATTGAGCAATGTCGCTTATTTTGTTGGGA
GAAAGTTAGCAGGTGAGGATGATATTGCGAGTATAACCACAAGATTGGAA
AACTATATGACGAGGGTTGATTGGGTGTATCTCAATGCTGAAGCCATCAT
AGGCAAATTGAAGGAGGAGGCGAAGGCGGCTAGGTAGTAAAGATACAAGT
TAGTTGCATTCGGGTGTGGGGTGAAGCGGAATGCTCTGATTTTGCTGTCC
CGCATGACTCAGATGCATAAAGCAAGATAACTCACAACATCAAGTGTTTC
CAGGCGAGTGCGCACTGTAGTCTTACTCCTTACTTTTCCTTATCTTTGTC
ACGTTACTCGCAGCTGTTTTGTCATCTCAGTCAGTTCATCATCACAAAAT
CATTCTTGGGGGGGTTCGAACAGGAACTAAGACGTCCCCTTGCGGAAATC
GAATTTAGGGTATTGAACACGCATTTGGGCCTTCCTTGTCGCCCCTTTCC
TTTCCC

Coding sequence (CDS) from alignment at scaffold_7:450239..452544-

>mRNA_3010 ID=mRNA_3010|Name=jgi.p|Nanoce1779_2|392649|organism=Nannochloropsis oceanica|type=CDS|length=4800bp|location=Sequence derived from alignment at scaffold_7:450239..452544- (Nannochloropsis oceanica)
TGTCCTCGTCAAGGACGGCAAGGTCACCGGCCTGCTCGATTTCGAGTTTG
CCGCCATCGACTACAGGGCAATGGAACTGGCTGTCTGTTTGAGTAAATAT
GCGGGGGAGTCCAAAGCAAGAGATTATTTTGACGATTTCATAAAAGGGTA
TATGCAGCATGCTCACTTGATGGACGAGGAGATTGAAGCCATTCCCACAC
TTGTGAACTTACGAATATTGAGCAATGTCGCTTATTTTGTTGGGAGAAAG
TTAGCAGGTGAGGATGATATTGCGAGTATAACCACAAGATTGGAAAACTA
TATGACGAGGGTTGATTGGGTGTATCTCAATGCTGAAGCCATCATAGGCA
AATTGAAGGAGGAGGCGAAGGCGGCTAGGTAGGATTTATAACAACGGTTT
CAACCACGCGCGCGTCCATTACGAGCACACTATTCTTAAGCAACTGAACG
AACAAAAACTTAGCTTTGCCATTCCGAAAGCCTTGCCCTGCAAGGACGAT
CCAAGCATGACCTACGCTGTGCTTTCCAATGGTGCCGATTCTTGCGTGTT
CGAAACAATCCCTGGTGAGCTGCCTAAGCTCACATGCGTGCAAGATATCG
GTAGGGCCTCAGGCGAGCTATCGGAGGCCATCCAGAAGGTAGACGTGAGT
CACCTGGAGTGCCCGACCGCACCGTACTCACAGTTTTACGACGTCCACCA
TGCAATCACTCGGGAGTCATTTTACCGAGAAATGGCTGGGCCTGATTTCG
ATGCTATTCGTGCCAGCGCCACTAAAGCTGTGGCCTACATTGAGGATATG
GAACGAAAACTCGAGTCCTTCGAGGCAAGGAAGCTACCCAAGAATCTGCT
GCACGCTGATTTACATTATGATAAGTGGGGATGTACGTGAGCTTCCCGGA
CGGGCGACATTATGTTATGAGATGGTGATGAAAATCGTCTGCAGTACACT
ATTTTTCGTTTTGTGGGCCTCCATAGGCGTCCAGGCCTTTATGCCTCCTC
AAACCCGACTTGTCGTCCGCTCAAGCTGCAGCAGCAGGTCAAAAATGTTA
GCCGCCGCAGCCACGACCACAACCTCTCCAAGCAACAGCTTTGTGGGATC
GACTTTGACGGATATACAGCTGGCCTATGAAGCGGCTGGTAAATTCTTCG
ACAGCACGGAGGGGATCAAGTTCAAGCAAACTAGTGGTGGCGTTAACAAT
TGTCCTCGTCAAGGACGGCAAGGTCACCGGCCTGCTCGATTTCGAGTTTG
CCGCCATCGACTACAGGGCAATGGAACTGGCTGTCTGTTTGAGTAAATAT
GCGGGGGAGTCCAAAGCAAGAGATTATTTTGACGATTTCATAAAAGGGTA
TATGCAGCATGCTCACTTGATGGACGAGGAGATTGAAGCCATTCCCACAC
TTGTGAACTTACGAATATTGAGCAATGTCGCTTATTTTGTTGGGAGAAAG
TTAGCAGGTGAGGATGATATTGCGAGTATAACCACAAGATTGGAAAACTA
TATGACGAGGGTTGATTGGGTGTATCTCAATGCTGAAGCCATCATAGGCA
AATTGAAGGAGGAGGCGAAGGCGGCTAGGTAGGATTTATAACAACGGTTT
CAACCACGCGCGCGTCCATTACGAGCACACTATTCTTAAGCAACTGAACG
AACAAAAACTTAGCTTTGCCATTCCGAAAGCCTTGCCCTGCAAGGACGAT
CCAAGCATGACCTACGCTGTGCTTTCCAATGGTGCCGATTCTTGCGTGTT
CGAAACAATCCCTGGTGAGCTGCCTAAGCTCACATGCGTGCAAGATATCG
GTAGGGCCTCAGGCGAGCTATCGGAGGCCATCCAGAAGGTAGACGTGAGT
CACCTGGAGTGCCCGACCGCACCGTACTCACAGTTTTACGACGTCCACCA
TGCAATCACTCGGGAGTCATTTTACCGAGAAATGGCTGGGCCTGATTTCG
ATGCTATTCGTGCCAGCGCCACTAAAGCTGTGGCCTACATTGAGGATATG
GAACGAAAACTCGAGTCCTTCGAGGCAAGGAAGCTACCCAAGAATCTGCT
GCACGCTGATTTACATTATGATAAGTGGGGATGTACGTGAGCTTCCCGGA
CGGGCGACATTATGTTATGAGATGGTGATGAAAATCGTCTGCAGTACACT
ATTTTTCGTTTTGTGGGCCTCCATAGGCGTCCAGGCCTTTATGCCTCCTC
AAACCCGACTTGTCGTCCGCTCAAGCTGCAGCAGCAGGTCAAAAATGTTA
GCCGCCGCAGCCACGACCACAACCTCTCCAAGCAACAGCTTTGTGGGATC
GACTTTGACGGATATACAGCTGGCCTATGAAGCGGCTGGTAAATTCTTCG
ACAGCACGGAGGGGATCAAGTTCAAGCAAACTAGTGGTGGCGTTAACAAT
TGTCCTCGTCAAGGACGGCAAGGTCACCGGCCTGCTCGATTTCGAGTTTG
CCGCCATCGACTACAGGGCAATGGAACTGGCTGTCTGTTTGAGTAAATAT
GCGGGGGAGTCCAAAGCAAGAGATTATTTTGACGATTTCATAAAAGGGTA
TATGCAGCATGCTCACTTGATGGACGAGGAGATTGAAGCCATTCCCACAC
TTGTGAACTTACGAATATTGAGCAATGTCGCTTATTTTGTTGGGAGAAAG
TTAGCAGGTGAGGATGATATTGCGAGTATAACCACAAGATTGGAAAACTA
TATGACGAGGGTTGATTGGGTGTATCTCAATGCTGAAGCCATCATAGGCA
AATTGAAGGAGGAGGCGAAGGCGGCTAGGTAGGATTTATAACAACGGTTT
CAACCACGCGCGCGTCCATTACGAGCACACTATTCTTAAGCAACTGAACG
AACAAAAACTTAGCTTTGCCATTCCGAAAGCCTTGCCCTGCAAGGACGAT
CCAAGCATGACCTACGCTGTGCTTTCCAATGGTGCCGATTCTTGCGTGTT
CGAAACAATCCCTGGTGAGCTGCCTAAGCTCACATGCGTGCAAGATATCG
GTAGGGCCTCAGGCGAGCTATCGGAGGCCATCCAGAAGGTAGACGTGAGT
CACCTGGAGTGCCCGACCGCACCGTACTCACAGTTTTACGACGTCCACCA
TGCAATCACTCGGGAGTCATTTTACCGAGAAATGGCTGGGCCTGATTTCG
ATGCTATTCGTGCCAGCGCCACTAAAGCTGTGGCCTACATTGAGGATATG
GAACGAAAACTCGAGTCCTTCGAGGCAAGGAAGCTACCCAAGAATCTGCT
GCACGCTGATTTACATTATGATAAGTGGGGATGTACGTGAGCTTCCCGGA
CGGGCGACATTATGTTATGAGATGGTGATGAAAATCGTCTGCAGTACACT
ATTTTTCGTTTTGTGGGCCTCCATAGGCGTCCAGGCCTTTATGCCTCCTC
AAACCCGACTTGTCGTCCGCTCAAGCTGCAGCAGCAGGTCAAAAATGTTA
GCCGCCGCAGCCACGACCACAACCTCTCCAAGCAACAGCTTTGTGGGATC
GACTTTGACGGATATACAGCTGGCCTATGAAGCGGCTGGTAAATTCTTCG
ACAGCACGGAGGGGATCAAGTTCAAGCAAACTAGTGGTGGCGTTAACAAT
TGTCCTCGTCAAGGACGGCAAGGTCACCGGCCTGCTCGATTTCGAGTTTG
CCGCCATCGACTACAGGGCAATGGAACTGGCTGTCTGTTTGAGTAAATAT
GCGGGGGAGTCCAAAGCAAGAGATTATTTTGACGATTTCATAAAAGGGTA
TATGCAGCATGCTCACTTGATGGACGAGGAGATTGAAGCCATTCCCACAC
TTGTGAACTTACGAATATTGAGCAATGTCGCTTATTTTGTTGGGAGAAAG
TTAGCAGGTGAGGATGATATTGCGAGTATAACCACAAGATTGGAAAACTA
TATGACGAGGGTTGATTGGGTGTATCTCAATGCTGAAGCCATCATAGGCA
AATTGAAGGAGGAGGCGAAGGCGGCTAGGTAGGATTTATAACAACGGTTT
CAACCACGCGCGCGTCCATTACGAGCACACTATTCTTAAGCAACTGAACG
AACAAAAACTTAGCTTTGCCATTCCGAAAGCCTTGCCCTGCAAGGACGAT
CCAAGCATGACCTACGCTGTGCTTTCCAATGGTGCCGATTCTTGCGTGTT
CGAAACAATCCCTGGTGAGCTGCCTAAGCTCACATGCGTGCAAGATATCG
GTAGGGCCTCAGGCGAGCTATCGGAGGCCATCCAGAAGGTAGACGTGAGT
CACCTGGAGTGCCCGACCGCACCGTACTCACAGTTTTACGACGTCCACCA
TGCAATCACTCGGGAGTCATTTTACCGAGAAATGGCTGGGCCTGATTTCG
ATGCTATTCGTGCCAGCGCCACTAAAGCTGTGGCCTACATTGAGGATATG
GAACGAAAACTCGAGTCCTTCGAGGCAAGGAAGCTACCCAAGAATCTGCT
GCACGCTGATTTACATTATGATAAGTGGGGATGTACGTGAGCTTCCCGGA
CGGGCGACATTATGTTATGAGATGGTGATGAAAATCGTCTGCAGTACACT
ATTTTTCGTTTTGTGGGCCTCCATAGGCGTCCAGGCCTTTATGCCTCCTC
AAACCCGACTTGTCGTCCGCTCAAGCTGCAGCAGCAGGTCAAAAATGTTA
GCCGCCGCAGCCACGACCACAACCTCTCCAAGCAACAGCTTTGTGGGATC
GACTTTGACGGATATACAGCTGGCCTATGAAGCGGCTGGTAAATTCTTCG
ACAGCACGGAGGGGATCAAGTTCAAGCAAACTAGTGGTGGCGTTAACAAT

Synonyms

Publications