jgi.p|Nanoce1779_2|576860, mRNA_301 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576860
Unique Name	mRNA_301
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1345
Alignment location	scaffold_3:741475..742911 +

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Properties


Property Name	Value
TranscriptId	576946
Track	FilteredModels2
ProteinId	576860

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:741475..742911 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576860	gene_301	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576860	mRNA_301-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_301	CDS_301	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:741475..742911+
coding sequence from alignment at scaffold_3:741475..742911+

mRNA sequence

>mRNA_301 ID=mRNA_301|Name=jgi.p|Nanoce1779_2|576860|organism=Nannochloropsis oceanica|type=mRNA|length=1345bp
ACAGACCGATATACTACGAGAGAGAAGTAGGGCTGCAGCAATTTGTATGT
CGCATTTTCCAAGGTGCTTTGTTGTGGTAAACGTCCTCCTGCTTTTGCGT
CATCCGGCCACTGCGTTCATTCCACGTGCCGACCACCACTGCAGCAGCGA
GCTCAAGCACTCAGGATTAAAGGCATGCCAGCTCCATACTGCCCACGTTT
CTTGGCTGTATGATTTCACACATGGTCCAGAACCTTTCGTTCTCCAAGCA
CAGGCCAGAGATGGCAATTCTGATCTCGATAAGTGCGCTCGTGCCCTAGA
CTTATCGGCTGCAGCCCAAGGCTCGACGGTGGAAGAGGTATTGCAATTGG
CGGGCGTGCCGTCCAGAAACGTGGCGCGGGCTTTAGAAGCCTTTATCGGC
TTGCAGGACTGCGATCCACATGCCGAAACACTCCGCCGGCTGCACCATCT
CAATTTTATTATAGAGCAAGGCGTCTACTCCTTTGAGGAAGCAATGGAGC
TGATCTCCACGCAATCGCGCTTTTTGGAAATGAATTTCTCATTTGTTTAC
AAAGATGGCGATCTTCTTGTCATGAACAAGCCGAGCGATGTGCGCATGGA
CGTGCCGCAGCGGGACGGCGGAGAAAGGAAGTGGCCGACAGAATTCACCT
GCTCCGATTGGCTCGACATACCGGGCCTGGTCGACCCTCCTCTTGATAAA
AAGCGTTTCTGCCACAACTTGGACTCAGCCACTTCGGGCATACTGTGCGT
TGCTCGCAATCAGGCAGCCGCTGCCAGGGTTGTGGATCTTTTTGCGAAGC
GGAAGGTAAAAAAAGAATATTTAGCAGTAGTTTTTGGCCATGTAGCCGCA
CCCCCGGGTAGCAACAACACAATTTTCATCGACGCGCCCATCGAAACAGA
CCCGACAAGCGACTTCAGAATGCGCATCGGCCCCGACGGAAAGGCGGCCC
AAACACAAGTACACGTTCTAGGTCAAGGCTATCTCACTCTGCAAGGACCT
CATTACAATGCCCCTGTTTCCAAGCTTCTACTCAAGCCGATCACTGGAAG
AAGACATCAGTTGAGGGTCCACACCCTGTCGCTAGGACACGGAATTGTCG
GTGATTCCTACGTGGAGGACTGGTCGACGTATCGGTTGATGCTCCACGCG
CACAAACTGTTTTTGCCCATCTCTGCCGAAAAACAATTGCACTTGGAGAC
GCCAGACCCTTTCATAGGGCTCTTATCCTCTTCTCCGCTCGGTGAAGGCT
AGTGGAAAGTAGATTTCAAAAAGTATGCAGCCCCCTCAATGGAAAAGTAG
AGAAATGTAAGCCAATAAAGAAACAAAGTACCACCAGATGTTATA

protein sequence of jgi.p|Nanoce1779_2|576860

>mRNA_301-protein ID=mRNA_301-protein|Name=jgi.p|Nanoce1779_2|576860|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MSHFPRCFVVVNVLLLLRHPATAFIPRADHHCSSELKHSGLKACQLHTAH
VSWLYDFTHGPEPFVLQAQARDGNSDLDKCARALDLSAAAQGSTVEEVLQ
LAGVPSRNVARALEAFIGLQDCDPHAETLRRLHHLNFIIEQGVYSFEEAM
ELISTQSRFLEMNFSFVYKDGDLLVMNKPSDVRMDVPQRDGGERKWPTEF
TCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFA
KRKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIETDPTSDFRMRIGPDGKA
AQTQVHVLGQGYLTLQGPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGI
VGDSYVEDWSTYRLMLHAHKLFLPISAEKQLHLETPDPFIGLLSSSPLGE
G*

mRNA from alignment at scaffold_3:741475..742911+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_301 ID=mRNA_301|Name=jgi.p|Nanoce1779_2|576860|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp|location=Sequence derived from alignment at scaffold_3:741475..742911+ (Nannochloropsis oceanica)
ACAGACCGATATACTACGAGAGAGAAGTAGGGCTGCAGCAATTTGTATGT
CGCATTTTCCAAGGTGCTTTGTTGTGGTAAACGTCCTCCTGCTTTTGCGT
CATCCGGCCACTGCGTTCATTCCACGTGCCGACCACCACTGCAGCAGCGA
GCTCAAGCACTCAGGATTAAAGGCATGCCAGCTCCATACTGCCCACGTTT
CTTGGCTGTATGATTTCACACATGGTCCAGAACCTTTCGTTCTCCAAGCA
CAGGCCAGAGATGGCAATTCTGATCTCGATAAGTGCGCTCGTGCCCTAGA
CTTATCGGCTGCAGCCCAAGGCTCGACGGTGGAAGAGGTATTGCAATTGG
CGGGCGTGCCGTCCAGAAACGTGGCGCGGGCTTTAGAAGCCTTTATCGGC
TTGCAGGACTGCGATCCACATGCCGAAACACTCCGCCGGCTGCACCATCT
CAATTTTATTATAGAGCAAGGCGTCTACTCCTTTGAGGAAGCAATGGAGC
TGATCTCCACGCAATCGCGCTTTTTGGAAATGAATTTCTCATTTGTTTAC
AAAGATGGCGATCTTCTTGTCATGAACAAGCCGAGCGATGTGCGCATGGA
CGTGCCGCAGCGGGACGGCGGAGAAAGGAAGTGGCCGACAGAATTCACCT
GCTCCGATTGGCTCGACATACCGGGCCTGGTCGACCCTCCTCTTGATAAA
AAGCGTTTCTGCCACAACTTGGACTCAGCCACTTCGGGCATACTGTGCGT
TGCTCGCAATCAGGCAGCCGCTGCCAGGGTTGTGGATCTTTTTGCGAAGC
GGAAGGTAAAAAAAGAATGTACGTTTGTTTTTCATCTCTCTTGTCTTGCC
TCTCTTATGCACTCAATCCCACCAAGCGCACACACACCCATCCACCCACC
AAATGGACAGATTTAGCAGTAGTTTTTGGCCATGTAGCCGCACCCCCGGG
TAGCAACAACACAATTTTCATCGACGCGCCCATCGAAACAGACCCGACAA
GCGACTTCAGAATGCGCATCGGCCCCGACGGAAAGGCGGCCCAAACACAA
GTACACGTTCTAGGTCAAGGCTATCTCACTCTGCAAGGACCTCATTACAA
TGCCCCTGTTTCCAAGCTTCTACTCAAGCCGATCACTGGAAGAAGACATC
AGTTGAGGGTCCACACCCTGTCGCTAGGACACGGAATTGTCGGTGATTCC
TACGTGGAGGACTGGTCGACGTATCGGTTGATGCTCCACGCGCACAAACT
GTTTTTGCCCATCTCTGCCGAAAAACAATTGCACTTGGAGACGCCAGACC
CTTTCATAGGGCTCTTATCCTCTTCTCCGCTCGGTGAAGGCTAGTGGAAA
GTAGATTTCAAAAAGTATGCAGCCCCCTCAATGGAAAAGTAGAGAAATGT
AAGCCAATAAAGAAACAAAGTACCACCAGATGTTATA

Coding sequence (CDS) from alignment at scaffold_3:741475..742911+

>mRNA_301 ID=mRNA_301|Name=jgi.p|Nanoce1779_2|576860|organism=Nannochloropsis oceanica|type=CDS|length=2412bp|location=Sequence derived from alignment at scaffold_3:741475..742911+ (Nannochloropsis oceanica)
ATGTCGCATTTTCCAAGGTGCTTTGTTGTGGTAAACGTCCTCCTGCTTTT
GCGTCATCCGGCCACTGCGTTCATTCCACGTGCCGACCACCACTGCAGCA
GCGAGCTCAAGCACTCAGGATTAAAGGCATGCCAGCTCCATACTGCCCAC
GTTTCTTGGCTGTATGATTTCACACATGGTCCAGAACCTTTCGTTCTCCA
AGCACAGGCCAGAGATGGCAATTCTGATCTCGATAAGTGCGCTCGTGCCC
TAGACTTATCGGCTGCAGCCCAAGGCTCGACGGTGGAAGAGGTATTGCAA
TTGGCGGGCGTGCCGTCCAGAAACGTGGCGCGGGCTTTAGAAGCCTTTAT
CGGCTTGCAGGACTGCGATCCACATGCCGAAACACTCCGCCGGCTGCACC
ATCTCAATTTTATTATAGAGCAAGGCGTCTACTCCTTTGAGGAAGCAATG
GAGCTGATCTCCACGCAATCGCGCTTTTTGGAAATGAATTTCTCATTTGT
TTACAAAGATGGCGATCTTCTTGTCATGAACAAGCCGAGCGATGTGCGCA
TGGACGTGCCGCAGCGGGACGGCGGAGAAAGGAAGTGGCCGACAGAATTC
ACCTGCTCCGATTGGCTCGACATACCGGGCCTGGTCGACCCTCCTCTTGA
TAAAAAGCGTTTCTGCCACAACTTGGACTCAGCCACTTCGGGCATACTGT
GCGTTGCTCGCAATCAGGCAGCCGCTGCCAGGGTTGTGGATCTTTTTGCG
AAGCGGAAGGTAAAAAAAGAATATTTAGCAGTAGTTTTTGGCCATGTAGC
CGCACCCCCGGGTAGCAACAACACAATTTTCATCGACGCGCCCATCGAAA
CAGACCCGACAAGCGACTTCAGAATGCGCATCGGCCCCGACGGAAAGGCG
GCCCAAACACAAGTACACGTTCTAGGTCAAGGCTATCTCACTCTGCAAGG
ACCTCATTACAATGCCCCTGTTTCCAAGCTTCTACTCAAGCCGATCACTG
GAAGAAGACATCAGTTGAGGGTCCACACCCTGTCGCTAGGACACGGAATT
GTCGGTGATTCCTACGTGGAGGACTGGTCGACGTATCGGTTGATGCTCCA
CGCGCACAAACTGTTTTTGCCCATCTCTGCCGAAAAACAATTGCACTTGG
AGACGCCAGACCCTTTCATAGGGCTCTTATCCTCTTCTCCGCTCGGTGAA
GGCTAGATGTCGCATTTTCCAAGGTGCTTTGTTGTGGTAAACGTCCTCCT
GCTTTTGCGTCATCCGGCCACTGCGTTCATTCCACGTGCCGACCACCACT
GCAGCAGCGAGCTCAAGCACTCAGGATTAAAGGCATGCCAGCTCCATACT
GCCCACGTTTCTTGGCTGTATGATTTCACACATGGTCCAGAACCTTTCGT
TCTCCAAGCACAGGCCAGAGATGGCAATTCTGATCTCGATAAGTGCGCTC
GTGCCCTAGACTTATCGGCTGCAGCCCAAGGCTCGACGGTGGAAGAGGTA
TTGCAATTGGCGGGCGTGCCGTCCAGAAACGTGGCGCGGGCTTTAGAAGC
CTTTATCGGCTTGCAGGACTGCGATCCACATGCCGAAACACTCCGCCGGC
TGCACCATCTCAATTTTATTATAGAGCAAGGCGTCTACTCCTTTGAGGAA
GCAATGGAGCTGATCTCCACGCAATCGCGCTTTTTGGAAATGAATTTCTC
ATTTGTTTACAAAGATGGCGATCTTCTTGTCATGAACAAGCCGAGCGATG
TGCGCATGGACGTGCCGCAGCGGGACGGCGGAGAAAGGAAGTGGCCGACA
GAATTCACCTGCTCCGATTGGCTCGACATACCGGGCCTGGTCGACCCTCC
TCTTGATAAAAAGCGTTTCTGCCACAACTTGGACTCAGCCACTTCGGGCA
TACTGTGCGTTGCTCGCAATCAGGCAGCCGCTGCCAGGGTTGTGGATCTT
TTTGCGAAGCGGAAGGTAAAAAAAGAATATTTAGCAGTAGTTTTTGGCCA
TGTAGCCGCACCCCCGGGTAGCAACAACACAATTTTCATCGACGCGCCCA
TCGAAACAGACCCGACAAGCGACTTCAGAATGCGCATCGGCCCCGACGGA
AAGGCGGCCCAAACACAAGTACACGTTCTAGGTCAAGGCTATCTCACTCT
GCAAGGACCTCATTACAATGCCCCTGTTTCCAAGCTTCTACTCAAGCCGA
TCACTGGAAGAAGACATCAGTTGAGGGTCCACACCCTGTCGCTAGGACAC
GGAATTGTCGGTGATTCCTACGTGGAGGACTGGTCGACGTATCGGTTGAT
GCTCCACGCGCACAAACTGTTTTTGCCCATCTCTGCCGAAAAACAATTGC
ACTTGGAGACGCCAGACCCTTTCATAGGGCTCTTATCCTCTTCTCCGCTC
GGTGAAGGCTAG

Synonyms

Publications