jgi.p|Nanoce1779_2|584134, mRNA_3009 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584134
Unique NamemRNA_3009
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1595
Alignment locationscaffold_7:448720..450445 +

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Properties
Property NameValue
TranscriptId584220
TrackFilteredModels2
ProteinId584134
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:448720..450445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584134gene_3009Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584134mRNA_3009-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3009CDS_3009Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3009 ID=mRNA_3009|Name=jgi.p|Nanoce1779_2|584134|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp
AGACACAGGTGTGTTTACTCGAATCGACTTTAATTCCGTCCAATCATGAA
GACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTTCTTGG
CGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCGGGCGA
TTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTCCCCGA
CATGGACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGTGGGCT
TGAGCATTGCCGGTCTGGCCGTCCCTTACCTCTCCTTCTTCGTGCCTCGC
ACGGGCGGAGGTAGCGCTGGGGGAGCATTAGCCGCCACGGATGCACTAGG
CCGTAATGTGACGTTTCCGGGCTGGTTGGCCACCCATCAGGCGGGCGATC
GCTCCTTAGTACACGGCCTCAGCGGCGATCCCACGTACCTGATCGTGAAG
GAGGACAAGACCATTGAGAAATATGCCGTGAATGCGATCTGCACGCATTT
GGGGTGCATCGTGCCCTGGAACAAGGCTCAGAACAAATTCATGTGCCCGT
GCCACGGCTCGCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCGCC
CCGCTCTCCCTGGCCCTCGCCCACGTCAACGAGGAGGATAAGAAGGTTGT
CGTGCTGACGCCCTGGACAGAAACGGATTTCCGAACAAACGAGGACCCCT
GGTGGAAGTAAATCCTCTGGTGGGTCATGTAAAGTAGATTCGTATAGGAA
AAGAGAAGGAAAGCGAGATGCGGGCACGCAATTGATAGGCAGAGAGGATA
ACTCCCATTTCAATCTTTGAAAACGGCCTCCTCTGTAAAGCACCGGGGGA
GGAGTTTGATGGGTAGAAAGGAGAGTAGTGGAACCAACCAAAAATGTGTG
GATATGCGTGCATGACTTTGTTTCTTTCTCTTTTGTCCGTGCAGTGCCGA
ATGAAAGTGAGGGTGGTCTGCGTCTTGGGACTCCTTTTGATTAAACCTTG
TGATATTGCATGCACGCTAGCACGGTGAGGGCGAAGGAAGAGGTTGCCTC
GCTCCTCGAGACTTATCATGAATTTAAATAATTTAAAATTGGGCCTTACA
CAATCTAAAAGCTGCGAAAATGATGATTTTGGTTTGTATTAAGCGTTTTG
CTCTATTCCGAGCCTGAGAAGTTGAAGAAAGCGCCGGCAATGTTCTTCGT
TACCCGCGACTGCTCTTCTCCTTTTATAGTGACGCAGCTAATGGTAGGCC
ACCTATGGGTCATCAATGCCTTGATACGTTTTAATTCATGCATGACGCCC
GAGCTACCATTATGTATCTTTTATCTGCCCTTATCTATCGAAATAAGTGA
TTTGGACCGTATAAATCGCTGTAAACGAGAAGATGGAAGGGAAAGGAAAG
GGGCGACAAGGAAGGCCCAAATGCGTGTTCAATACCCTAAATTCGATTTC
CGCAAGGGGACGTCTTAGTTCCTGTTCGAACCCCCCCAAGAATGATTTTG
TGATGATGAACTGACTGAGATGACAAAACAGCTGCGAGTAACGTGACAAA
GATAAGGAAAAGTAAGGAGTAAGACTACAGTGCGCACTCGCCTGG
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protein sequence of jgi.p|Nanoce1779_2|584134

>mRNA_3009-protein ID=mRNA_3009-protein|Name=jgi.p|Nanoce1779_2|584134|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MKTAVVLATLFCGAQGFLAPSLPTTDVVARSNSGRLTTKMAEVAGEEPFV
PDMDRRKLMNSILLGSVGLSIAGLAVPYLSFFVPRTGGGSAGGALAATDA
LGRNVTFPGWLATHQAGDRSLVHGLSGDPTYLIVKEDKTIEKYAVNAICT
HLGCIVPWNKAQNKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNEEDKK
VVVLTPWTETDFRTNEDPWWK*
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mRNA from alignment at scaffold_7:448720..450445+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3009 ID=mRNA_3009|Name=jgi.p|Nanoce1779_2|584134|organism=Nannochloropsis oceanica|type=mRNA|length=1726bp|location=Sequence derived from alignment at scaffold_7:448720..450445+ (Nannochloropsis oceanica)
AGACACAGGTGTGTTTACTCGAATCGACTTTAATTCCGTCCAATCATGAA
GACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTTCTTGG
CGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCGGGCGA
TTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTCCCCGA
CATGGACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGTGGGCT
TGAGCATTGCCGGTCTGGCCGTCCCTTACCTCTCCTTCTTCGTGCCTCGC
ACGGGCGGAGGTAGCGCTGGGGGAGCATTAGCCGCCACGGATGCACTAGG
CCGTAATGTGACGTTTCCGGGCTGGTTGGCCACCCATCAGGCGGGCGATC
GCTCCTTAGTACACGGCCTCAGCGGCGATCCCACGTACCTGATCGTGAAG
GAGGACAAGACCATTGAGAAATATGCCGTGAATGCGATCTGCACGCATTT
GGGGTGCATCGTGCCCTGGAACAAGGCTCAGAACAAATTCATGTGCCCGT
GCCACGGCTCGCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCGCC
CCGCTCTCCCTGGCCCTCGCCCACGTCAACGAGGAGGATAAGAAGGTTGT
CGTGCTGACGCCCTGGACAGAAACGGATTTCCGAACAAACGAGGACCCCT
GGTACGTACCGGTGTAGTGGTTTGTTGTGGTGTGGTAGTTTGTGGTTGGG
TGGGCAACTTGTGGCCGTGCCATTTAGGTGTATTCACTTTTTATTTTCCT
TTGCCTATCATCCCTTCTTCTTCTCGTCATAGGTGGAAGTAAATCCTCTG
GTGGGTCATGTAAAGTAGATTCGTATAGGAAAAGAGAAGGAAAGCGAGAT
GCGGGCACGCAATTGATAGGCAGAGAGGATAACTCCCATTTCAATCTTTG
AAAACGGCCTCCTCTGTAAAGCACCGGGGGAGGAGTTTGATGGGTAGAAA
GGAGAGTAGTGGAACCAACCAAAAATGTGTGGATATGCGTGCATGACTTT
GTTTCTTTCTCTTTTGTCCGTGCAGTGCCGAATGAAAGTGAGGGTGGTCT
GCGTCTTGGGACTCCTTTTGATTAAACCTTGTGATATTGCATGCACGCTA
GCACGGTGAGGGCGAAGGAAGAGGTTGCCTCGCTCCTCGAGACTTATCAT
GAATTTAAATAATTTAAAATTGGGCCTTACACAATCTAAAAGCTGCGAAA
ATGATGATTTTGGTTTGTATTAAGCGTTTTGCTCTATTCCGAGCCTGAGA
AGTTGAAGAAAGCGCCGGCAATGTTCTTCGTTACCCGCGACTGCTCTTCT
CCTTTTATAGTGACGCAGCTAATGGTAGGCCACCTATGGGTCATCAATGC
CTTGATACGTTTTAATTCATGCATGACGCCCGAGCTACCATTATGTATCT
TTTATCTGCCCTTATCTATCGAAATAAGTGATTTGGACCGTATAAATCGC
TGTAAACGAGAAGATGGAAGGGAAAGGAAAGGGGCGACAAGGAAGGCCCA
AATGCGTGTTCAATACCCTAAATTCGATTTCCGCAAGGGGACGTCTTAGT
TCCTGTTCGAACCCCCCCAAGAATGATTTTGTGATGATGAACTGACTGAG
ATGACAAAACAGCTGCGAGTAACGTGACAAAGATAAGGAAAAGTAAGGAG
TAAGACTACAGTGCGCACTCGCCTGG
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Coding sequence (CDS) from alignment at scaffold_7:448720..450445+

>mRNA_3009 ID=mRNA_3009|Name=jgi.p|Nanoce1779_2|584134|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_7:448720..450445+ (Nannochloropsis oceanica)
ATGAAGACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTT
CTTGGCGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCG
GGCGATTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTC
CCCGACATGGACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGT
GGGCTTGAGCATTGCCGGTCTGGCCGTCCCTTACCTCTCCTTCTTCGTGC
CTCGCACGGGCGGAGGTAGCGCTGGGGGAGCATTAGCCGCCACGGATGCA
CTAGGCCGTAATGTGACGTTTCCGGGCTGGTTGGCCACCCATCAGGCGGG
CGATCGCTCCTTAGTACACGGCCTCAGCGGCGATCCCACGTACCTGATCG
TGAAGGAGGACAAGACCATTGAGAAATATGCCGTGAATGCGATCTGCACG
CATTTGGGGTGCATCGTGCCCTGGAACAAGGCTCAGAACAAATTCATGTG
CCCGTGCCACGGCTCGCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCC
CCGCCCCGCTCTCCCTGGCCCTCGCCCACGTCAACGAGGAGGATAAGAAG
GTTGTCGTGCTGACGCCCTGGACAGAAACGGATTTCCGAACAAACGAGGA
CCCCTGGTGGAAGTAAATGAAGACTGCCGTCGTATTGGCCACCCTCTTTT
GCGGCGCTCAAGGCTTCTTGGCGCCCAGCTTGCCCACGACGGATGTTGTT
GCCCGCAGCAACAGCGGGCGATTGACCACCAAGATGGCTGAGGTGGCGGG
CGAGGAGCCTTTTGTCCCCGACATGGACCGCCGCAAGCTCATGAATAGCA
TTTTGTTGGGCTCCGTGGGCTTGAGCATTGCCGGTCTGGCCGTCCCTTAC
CTCTCCTTCTTCGTGCCTCGCACGGGCGGAGGTAGCGCTGGGGGAGCATT
AGCCGCCACGGATGCACTAGGCCGTAATGTGACGTTTCCGGGCTGGTTGG
CCACCCATCAGGCGGGCGATCGCTCCTTAGTACACGGCCTCAGCGGCGAT
CCCACGTACCTGATCGTGAAGGAGGACAAGACCATTGAGAAATATGCCGT
GAATGCGATCTGCACGCATTTGGGGTGCATCGTGCCCTGGAACAAGGCTC
AGAACAAATTCATGTGCCCGTGCCACGGCTCGCAGTACGACAAGACCGGC
AAGGTCGTGCGTGGCCCCGCCCCGCTCTCCCTGGCCCTCGCCCACGTCAA
CGAGGAGGATAAGAAGGTTGTCGTGCTGACGCCCTGGACAGAAACGGATT
TCCGAACAAACGAGGACCCCTGGTGGAAGTAA
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Synonyms
Publications