jgi.p|Nanoce1779_2|564799, mRNA_3007 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|564799
Unique NamemRNA_3007
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length390
Alignment locationscaffold_7:445290..445679 -

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Properties
Property NameValue
TranscriptId564885
TrackFilteredModels2
ProteinId564799
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:445290..445679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564799gene_3007Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3007CDS_3007Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564799mRNA_3007-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3007 ID=mRNA_3007|Name=jgi.p|Nanoce1779_2|564799|organism=Nannochloropsis oceanica|type=mRNA|length=390bp
ATGATCCTGTCCACGGTGTGTGAGTTGCGTCGAAGCGAGTGGCGATTGCA
TCGTGAATCCCAAAACAAAAGGAGCGTAGAAGTAGCCGGGGGTAGCGAGG
GAGAACAATTGTTTTCTTCAACTTCCGACCAACTGATGAACAAAAACATT
TGGAGCAAGCAGCTGTCGGACCGACGTGGTCAATTCTTATGTCTCGATCT
CTCCGTTCCCGTTTGTTTGCTTGTCAATGGAGACCCAGGGACACGGAGTG
GTAGAGGGGAAGCTACCGTATCTGTGCCTGAACTGATGGGCACGGAGGAG
TACTGCATGGGTCAACCCACTGGAGTGGTTGGATGGGAACATATGACAAG
TCCGGGAGCCCCAGGTCCCGAGACATCGTGTCGCGGCTGA
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protein sequence of jgi.p|Nanoce1779_2|564799

>mRNA_3007-protein ID=mRNA_3007-protein|Name=jgi.p|Nanoce1779_2|564799|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MILSTVCELRRSEWRLHRESQNKRSVEVAGGSEGEQLFSSTSDQLMNKNI
WSKQLSDRRGQFLCLDLSVPVCLLVNGDPGTRSGRGEATVSVPELMGTEE
YCMGQPTGVVGWEHMTSPGAPGPETSCRG*
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mRNA from alignment at scaffold_7:445290..445679-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3007 ID=mRNA_3007|Name=jgi.p|Nanoce1779_2|564799|organism=Nannochloropsis oceanica|type=mRNA|length=390bp|location=Sequence derived from alignment at scaffold_7:445290..445679- (Nannochloropsis oceanica)
ATGATCCTGTCCACGGTGTGTGAGTTGCGTCGAAGCGAGTGGCGATTGCA
TCGTGAATCCCAAAACAAAAGGAGCGTAGAAGTAGCCGGGGGTAGCGAGG
GAGAACAATTGTTTTCTTCAACTTCCGACCAACTGATGAACAAAAACATT
TGGAGCAAGCAGCTGTCGGACCGACGTGGTCAATTCTTATGTCTCGATCT
CTCCGTTCCCGTTTGTTTGCTTGTCAATGGAGACCCAGGGACACGGAGTG
GTAGAGGGGAAGCTACCGTATCTGTGCCTGAACTGATGGGCACGGAGGAG
TACTGCATGGGTCAACCCACTGGAGTGGTTGGATGGGAACATATGACAAG
TCCGGGAGCCCCAGGTCCCGAGACATCGTGTCGCGGCTGA
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Coding sequence (CDS) from alignment at scaffold_7:445290..445679-

>mRNA_3007 ID=mRNA_3007|Name=jgi.p|Nanoce1779_2|564799|organism=Nannochloropsis oceanica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_7:445290..445679- (Nannochloropsis oceanica)
ATGATCCTGTCCACGGTGTGTGAGTTGCGTCGAAGCGAGTGGCGATTGCA
TCGTGAATCCCAAAACAAAAGGAGCGTAGAAGTAGCCGGGGGTAGCGAGG
GAGAACAATTGTTTTCTTCAACTTCCGACCAACTGATGAACAAAAACATT
TGGAGCAAGCAGCTGTCGGACCGACGTGGTCAATTCTTATGTCTCGATCT
CTCCGTTCCCGTTTGTTTGCTTGTCAATGGAGACCCAGGGACACGGAGTG
GTAGAGGGGAAGCTACCGTATCTGTGCCTGAACTGATGGGCACGGAGGAG
TACTGCATGGGTCAACCCACTGGAGTGGTTGGATGGGAACATATGACAAG
TCCGGGAGCCCCAGGTCCCGAGACATCGTGTCGCGGCTGA
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Synonyms
Publications