Properties
| Property Name | Value |
|---|
| TranscriptId | 584202 |
| Track | FilteredModels2 |
| ProteinId | 584116 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:438032..442528 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3004 ID=mRNA_3004|Name=jgi.p|Nanoce1779_2|584116|organism=Nannochloropsis oceanica|type=mRNA|length=1830bp
TGTTTTTGTTCATCAGTTGGTCGGAAGTTGAAGAAAACAATTGTTCTCCC
TCGCTACCCCCAACAACTCACACACCGTGGACAGGATCATGATAAAACGC
ACGCCGCTGGCAAGCCTTTCCTCGGAGGAGACAACACATAGAGACTATCG
GGAAAAGTTGGGGCCTCACCCGTGGTTACCAAGTGTCGTCTCTAGCCGCG
CTCTTTCTACGGCGTCCGAGGTTTCTTGCCGCCTACTATATTTACGGAAG
ATGTGCACACGGACTCATGACGTATCGTATTGTTACGGCATTTGGCTATG
TTGGGCTTTGCCAATCATGACCTAACATGATCACCCCCACGGCCAGCCAT
TCCTTCCGACCCGGGGGATCTCACTCCTCACGTATTTGGACCACGTTGTC
AGATCTCTGGTCACCGCGAAAGAGAACTGAGAAAGAGGGCGAGGAGAGGC
ATGGCCTTGCGCCCCGGTACCCAACGACAGCACTACCGGACAACGCCTGA
AGCATTGCAAACGTAGTCAATGGCAGTGCCGGCAGGATCACATGTGCAAG
CTCTCAGGGTCTTGCAGGGCTGCATGCTCCCTGTAGTGCAATGCTACTGC
CACTGCATCACCATACTCACTCGTATCCACGTTTTATCCCAAGCTTACTT
GGTGTGCTCATCATTTTCCCCATCTACCGACCCCATCTAGACACAGGTGT
GTTTACTCGAATCGACTTTAATTCCGTCCAATCATGAAGACTGCCGTCGT
ATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTTCTTGGCGCCCAGCTTGC
CCACGACGGATGTTGTTGCCCGCAGCAACAGCGGGCGATTGACCACCAAG
ATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTCCCCGACATGGACCGCCG
CAAGCTCATGAATAGCATTTTGTTGGGCTCCGTGGGCTTGAACGTTGCCG
GTCTGGCCGTCCCTTACATCGCCTTCTTCGTGCCTCGCACGGGGGGCGGT
GCCGGCGGGGGACTGGTCGCCAAAGATGCGCTAGGTGATGACGTGAAGGT
GTCGGGCTGGTTGGCCACCCATCAGGCGGGCGATCGCTCCCTAGTGCAGG
GCCTTAAGGGCGACGCCACGTATCTGATCGTGAAGGAGGACAAGACCATT
GAGAACTACGGCTTGAACGCCGTCTGCACGCATTTGGGATGTGTCGTGCC
CTGGAACAAGGCCGAGAACAAATTCATGTGCCCGTGCCACGGCTCCCAGT
ACGACAAGACCGGCAAGGTCGTGCGTGGCCCCGCCCCGCTCTCCCTGGCC
CTCGCCCACGTCAACGAGAATGACGACAAGGTCGTGCTGACGCCCTGGAC
AGAAACGGATTTCCGAACGAACGTAGCCCCTTGGTGGAAGTAAATCCTCT
TGTGGACAACATAAGGGAGCTGCGCATAGAAACTGAGAAGGAAAGCGAGA
TACAGACACGTATGGATAGGCAGAGAGGGTGACTTTTATATCATTCTTTG
TAAGCGATCTCCTTGGTCTGGAGAGTAGACGGTGGCAAAAAGGAGGACCC
CGCCCAGAAGTAAAGCACCGGGGGAGTAGTTGGATGGTTAGAAAGGAGAG
AGTTGATGCCAACCAAGAATGTGTAAATGTGCGTGCATGACTTTGTTTGT
CTCTTTCTGTTGTGTCCGTGCAGTGTCGAATGAAAGTGAGGATGGTGCAT
CTTGGGGACTCCTTTTGATAAAACCTTGTGATATTGCATGCATGCTCGCA
CGGGCAGGGGGAAAGAGGTTGCTTGAAGTTCCCCTAGAACAAACTAAAAA
ACAAAAAGAAAAATATGAGACTTTATACCA back to topprotein sequence of jgi.p|Nanoce1779_2|584116 >mRNA_3004-protein ID=mRNA_3004-protein|Name=jgi.p|Nanoce1779_2|584116|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MKTAVVLATLFCGAQGFLAPSLPTTDVVARSNSGRLTTKMAEVAGEEPFV
PDMDRRKLMNSILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLVAKDAL
GDDVKVSGWLATHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTH
LGCVVPWNKAENKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNENDDKV
VLTPWTETDFRTNVAPWWK* back to topmRNA from alignment at scaffold_7:438032..442528+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3004 ID=mRNA_3004|Name=jgi.p|Nanoce1779_2|584116|organism=Nannochloropsis oceanica|type=mRNA|length=4497bp|location=Sequence derived from alignment at scaffold_7:438032..442528+ (Nannochloropsis oceanica)
TGTTTTTGTTCATCAGTTGGTCGGAAGTTGAAGAAAACAATTGTTCTCCC
TCGCTACCCCCGGCTACTTCTACGCTCCTTTTGTTTTGGGATTCACGATG
CAATCGCCACTCGCTTCGACGCAACTCACACACCGTGGACAGGATCATGA
TAAAACGCACGCCGCTGGCAAGCCTTTCCTCGGAGGAGACAACACATAGA
GACTATCGGGAAAAGTTGGGGCCTCACCCGTGGTTACCAAGTGTCGTCTC
TAGCCGCGCTCTTTCTACGGCGTCCGAGGTTTCTTGCCGCCTACTATATT
TACGGAAGATGTGCACACGGACTCATGACGTATCGTATTGTTACGGCATT
TGGCTATGTTGGGCTTTGCCAATCATGACCTAACATGATCACCCCCACGG
CCAGCCATTCCTTCCGACCCGGGGGATCTCACTCCTCACGTATTTGGACC
ACGTTGTCAGATCTCTGGTCACCGCGAAAGAGAACTGAGAAAGAGGGCGA
GGAGAGGCATGGCCTTGCGCCCCGGTACCCAACGACAGCACTACCGGACA
ACGCCTGAAGCATTGCAAACGTAGTCAATGGCAGTGCCGGCAGGATCACA
TGTGCAAGCTCTCAGGGTCTTGCAGGGCTGCATGCTCCCTGTAGTGCAAT
GCTACTGCCACTGCATCACCATACTCACTCGTATCCACGTTTTATCCCAA
GCTTACTTGGTGTGCTCATCATTTTCCCCATCTACCGACCCCATCTAGAC
ACAGGTGAGTTTACTCGAATCGACTTTAATTCCGTCCAATCATGAAGACT
GCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTTCTTGGCGCC
CAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCGGGCGATTGA
CCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTCCCCGACATG
GACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGTGGGCTTGAA
CGTTGCCGGTCTGGCCGTCCCTTACATCGCCTTCTTCGTGCCTCGCACGG
GGGGCGGTGCCGGCGGGGGACTGGTCGCCAAAGATGCGCTAGGTGATGAC
GTGAAGGTGTCGGGCTGGTTGGCCACCCATCAGGCGGGCGATCGCTCCCT
AGTGCAGGGCCTTAAGGGCGACGCCACGTATCTGATCGTGAAGGAGGACA
AGACCATTGAGAACTACGGCTTGAACGCCGTCTGCACGCATTTGGGATGT
GTCGTGCCCTGGAACAAGGCCGAGAACAAATTCATGTGCCCGTGCCACGG
CTCCCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCGCCCCGCTCT
CCCTGGCCCTCGCCCACGTCAACGAGAATGACGACAAGGTCGTGCTGACG
CCCTGGACAGAAACGGATTTCCGAACGAACGTAGCCCCTTGGTACGTACC
GACCGGTGCAGTGATGTATTGTGGTTGGGTGGGCAACTTGTGGCTGTGCC
GCTCAGATGCATTCACCTCTTTCCTCTTTCCTCTCCCCCTCACGACACAG
GTGGAAGTAAATCCTCTTGTGGACAACATAAGGGAGCTGCGCATAGAAAC
TGAGAAGGAAAGCGAGATACAGACACGTATGGATAGGCAGAGAGGGTGAC
TTTTATATCATTCTTTGTAAGCGATCTCCTTGGTCTGGAGAGTAGACGGT
GGCAAAAAGGAGGACCCCGCCCAGAAGTAAAGCACCGGGGGAGTAGTTGG
ATGGTTAGAAAGGAGAGAGTTGATGCCAACCAAGAATGTGTAAATGTGCG
TGCATGACTTTGTTTGTCTCTTTCTGTTGTGTCCGTGCAGTGTCGAATGA
AAGTGAGGATGGTGCATCTTGGGGACTCCTTTTGATAAAACCTTGTGATA
TTGCATGCATGCTCGCACGGGCAGGGGGAAAGAGGTTGCTTGAAGTTCCC
CTAGAACAAACTAAAAAACAAAAAGAAAAATATGAGACTTTATACCATCT
CTAAAATTGAGAAAGTGTATTGTTTTTGCATCATTGCGTGAATCCACAAA
GTGGGTTGTACAGGCCGGTCAGCGGGGTTGGATTCCCCTCCATGTCCCGC
CGCCCCCCTCCTTTTTCCTTCGAGACGTGGTTAGTGACTTGTTTTCTCGC
TCTGTAAGGTGACCTCCTTCCAATTCAATCGATGCATGGCCCTTGCTCCA
CCTCGATTACTCGCCTCTCGTCACATGCGCTAGGGGACATGAATGAGACC
TGGACATGTCAGCCGCGACACGATGTCTCGGGACCTGGGGCTCCCGGACT
TGTCATATGTTCCCATCCAACCACTCCAGTGGGTTGACCCATGCAGTACT
CCTCCGTGCCCATCAGTTCAGGCACAGATACGGTAGCTTCCCCTCTACCA
CTCCGTGTCCCTGGGTCTCCATTGACAAGCAAACAAACGGGAACGGAGAG
ATCGAGACATAAGAATTGACCACGTCGGTCCGACAGCTGCTTGCTCCAAA
TGTTTTTGTTCATCAGTTGGTCGGAAGTTGAAGAAAACAATTGTTCTCCC
TCGCTACCCCCGGCTACTTCTACGCTCCTTTTGTTTTGGGATTCACGATG
CAATCGCCACTCGCTTCGACGCAACTCACACACCGTGGACAGGATCATGA
TAAAACGCACGCCGCTGGCAAGCCTTTCCTCGGAGGAGACAACACATAGA
GACTATCGGGAAAAGTTGGGGCCTCACCCGTGGTTACCAAGTGTCGTCTC
TAGCCGCGCTCTTTCTACGGCGTCCGAGGTTTCTTGCCGCCTACTATATT
TACGGAAGATGTGCACACGGACTCATGACGTATCGTATTGTTACGGCATT
TGGCTATGTTGGGCTTTGCCAATCATGACCTAACATGATCACCCCCACGG
CCAGCCATTCCTTCCGACCCGGGGGATCTCACTCCTCACGTATTTGGACC
ACGTTGTCAGATCTCTGGTCACCGCGAAAGAGAACTGAGAAAGAGGGCGA
GGAGAGGCATGGCCTTGCGCCCCGGTACCCAACGACAGCACTACCGGACA
ACGCCTGAAGCATTGCAAACGTAGTCAATGGCAGTGCCGGCAGGATCACA
TGTGCAAGCTCTCAGGGTCTTGCAGGGCTGCATGCTCCCTGTAGTGCAAT
GCTACTGCCACTGCATCACCATACTCACTCGTATCCACGTTTTATCCCAA
GCTTACTTGGTGTGCTCATCATTTTCCCCATCTACCGACCCCATCTAGAC
ACAGGTGTGTTTACTCGAATCGACTTTAATTCCGTCCAATCATGAAGACT
GCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTTCTTGGCGCC
CAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCGGGCGATTGA
CCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTCCCCGACATG
GACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGTGGGCTTGAA
CGTTGCCGGTCTGGCCGTCCCTTACATCGCCTTCTTCGTGCCTCGCACGG
GGGGCGGTGCCGGCGGGGGACTGGTCGCCAAAGATGCGCTAGGTGATGAC
GTGAAGGTGTCGGGCTGGTTGGCCACCCATCAGGCGGGCGATCGCTCCCT
AGTGCAGGGCCTTAAGGGCGACGCCACGTATCTGATCGTGAAGGAGGACA
AGACCATTGAGAACTACGGCTTGAACGCCGTCTGCACGCATTTGGGATGT
GTCGTGCCCTGGAACAAGGCCGAGAACAAATTCATGTGCCCGTGCCACGG
CTCCCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCGCCCCGCTCT
CCCTGGCCCTCGCCCACGTCAACGAGAATGACGACAAGGTCGTGCTGACG
CCCTGGACAGAAACGGATTTCCGAACGAACGTAGCCCCTTGGTACGTACC
GACCGGTGCAGTGATGTATTGTGGTTGGGTGGGCAACTTGTGGCTGTGCC
GCTCAGATGCATTCACCTCTTTCCTCTTTCCTCTCCCCCTCACGACACAG
GTGGAAGTAAATCCTCTTGTGGACAACATAAGGGAGCTGCGCATAGAAAC
TGAGAAGGAAAGCGAGATACAGACACGTATGGATAGGCAGAGAGGGTGAC
TTTTATATCATTCTTTGTAAGCGATCTCCTTGGTCTGGAGAGTAGACGGT
GGCAAAAAGGAGGACCCCGCCCAGAAGTAAAGCACCGGGGGAGTAGTTGG
ATGGTTAGAAAGGAGAGAGTTGATGCCAACCAAGAATGTGTAAATGTGCG
TGCATGACTTTGTTTGTCTCTTTCTGTTGTGTCCGTGCAGTGTCGAATGA
AAGTGAGGATGGTGCATCTTGGGGACTCCTTTTGATAAAACCTTGTGATA
TTGCATGCATGCTCGCACGGGCAGGGGGAAAGAGGTTGCTTGAAGTTCCC
CTAGAACAAACTAAAAAACAAAAAGAAAAATATGAGACTTTATACCA back to topCoding sequence (CDS) from alignment at scaffold_7:438032..442528+ >mRNA_3004 ID=mRNA_3004|Name=jgi.p|Nanoce1779_2|584116|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_7:438032..442528+ (Nannochloropsis oceanica)
ATGAAGACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTT
CTTGGCGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCG
GGCGATTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTC
CCCGACATGGACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGT
GGGCTTGAACGTTGCCGGTCTGGCCGTCCCTTACATCGCCTTCTTCGTGC
CTCGCACGGGGGGCGGTGCCGGCGGGGGACTGGTCGCCAAAGATGCGCTA
GGTGATGACGTGAAGGTGTCGGGCTGGTTGGCCACCCATCAGGCGGGCGA
TCGCTCCCTAGTGCAGGGCCTTAAGGGCGACGCCACGTATCTGATCGTGA
AGGAGGACAAGACCATTGAGAACTACGGCTTGAACGCCGTCTGCACGCAT
TTGGGATGTGTCGTGCCCTGGAACAAGGCCGAGAACAAATTCATGTGCCC
GTGCCACGGCTCCCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCG
CCCCGCTCTCCCTGGCCCTCGCCCACGTCAACGAGAATGACGACAAGGTC
GTGCTGACGCCCTGGACAGAAACGGATTTCCGAACGAACGTAGCCCCTTG
GTGGAAGTAAATGAAGACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCG
CTCAAGGCTTCTTGGCGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGC
AGCAACAGCGGGCGATTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGA
GCCTTTTGTCCCCGACATGGACCGCCGCAAGCTCATGAATAGCATTTTGT
TGGGCTCCGTGGGCTTGAACGTTGCCGGTCTGGCCGTCCCTTACATCGCC
TTCTTCGTGCCTCGCACGGGGGGCGGTGCCGGCGGGGGACTGGTCGCCAA
AGATGCGCTAGGTGATGACGTGAAGGTGTCGGGCTGGTTGGCCACCCATC
AGGCGGGCGATCGCTCCCTAGTGCAGGGCCTTAAGGGCGACGCCACGTAT
CTGATCGTGAAGGAGGACAAGACCATTGAGAACTACGGCTTGAACGCCGT
CTGCACGCATTTGGGATGTGTCGTGCCCTGGAACAAGGCCGAGAACAAAT
TCATGTGCCCGTGCCACGGCTCCCAGTACGACAAGACCGGCAAGGTCGTG
CGTGGCCCCGCCCCGCTCTCCCTGGCCCTCGCCCACGTCAACGAGAATGA
CGACAAGGTCGTGCTGACGCCCTGGACAGAAACGGATTTCCGAACGAACG
TAGCCCCTTGGTGGAAGTAA back to top
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