jgi.p|Nanoce1779_2|584115, mRNA_3002 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584115
Unique Name	mRNA_3002
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1888
Alignment location	scaffold_7:438032..440028 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584201
Track	FilteredModels2
ProteinId	584115

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:438032..440028 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584115	gene_3002	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584115	mRNA_3002-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3002	CDS_3002	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:438032..440028+
coding sequence from alignment at scaffold_7:438032..440028+

mRNA sequence

>mRNA_3002 ID=mRNA_3002|Name=jgi.p|Nanoce1779_2|584115|organism=Nannochloropsis oceanica|type=mRNA|length=1888bp
TGTTTTTGTTCATCAGTTGGTCGGAAGTTGAAGAAAACAATTGTTCTCCC
TCGCTACCCCCGGCTACTTCTACGCTCCTTTTGTTTTGGGATTCACGATG
CAATCGCCACTCGCTTCGACGCAACTCACACACCGTGGACAGGATCATGA
TAAAACGCACGCCGCTGGCAAGCCTTTCCTCGGAGGAGACAACACATAGA
GACTATCGGGAAAAGTTGGGGCCTCACCCGTGGTTACCAAGTGTCGTCTC
TAGCCGCGCTCTTTCTACGGCGTCCGAGGTTTCTTGCCGCCTACTATATT
TACGGAAGATGTGCACACGGACTCATGACGTATCGTATTGTTACGGCATT
TGGCTATGTTGGGCTTTGCCAATCATGACCTAACATGATCACCCCCACGG
CCAGCCATTCCTTCCGACCCGGGGGATCTCACTCCTCACGTATTTGGACC
ACGTTGTCAGATCTCTGGTCACCGCGAAAGAGAACTGAGAAAGAGGGCGA
GGAGAGGCATGGCCTTGCGCCCCGGTACCCAACGACAGCACTACCGGACA
ACGCCTGAAGCATTGCAAACGTAGTCAATGGCAGTGCCGGCAGGATCACA
TGTGCAAGCTCTCAGGGTCTTGCAGGGCTGCATGCTCCCTGTAGTGCAAT
GCTACTGCCACTGCATCACCATACTCACTCGTATCCACGTTTTATCCCAA
GCTTACTTGGTGTGCTCATCATTTTCCCCATCTACCGACCCCATCTAGAC
ACAGGTGAGTTTACTCGAATCGACTTTAATTCCGTCCAATCATGAAGACT
GCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTTCTTGGCGCC
CAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCGGGCGATTGA
CCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTCCCCGACATG
GACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGTGGGCTTGAA
CGTTGCCGGTCTGGCCGTCCCTTACATCGCCTTCTTCGTGCCTCGCACGG
GGGGCGGTGCCGGCGGGGGACTGGTCGCCAAAGATGCGCTAGGTGATGAC
GTGAAGGTGTCGGGCTGGTTGGCCACCCATCAGGCGGGCGATCGCTCCCT
AGTGCAGGGCCTTAAGGGCGACGCCACGTATCTGATCGTGAAGGAGGACA
AGACCATTGAGAACTACGGCTTGAACGCCGTCTGCACGCATTTGGGATGT
GTCGTGCCCTGGAACAAGGCCGAGAACAAATTCATGTGCCCGTGCCACGG
CTCCCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCGCCCCGCTCT
CCCTGGCCCTCGCCCACGTCAACGAGAATGACGACAAGGTCGTGCTGACG
CCCTGGACAGAAACGGATTTCCGAACGAACGTAGCCCCTTGGTGGAAGTA
AATCCTCTTGTGGACAACATAAGGGAGCTGCGCATAGAAACTGAGAAGGA
AAGCGAGATACAGACACGTATGGATAGGCAGAGAGGGTGACTTTTATATC
ATTCTTTGTAAGCGATCTCCTTGGTCTGGAGAGTAGACGGTGGCAAAAAG
GAGGACCCCGCCCAGAAGTAAAGCACCGGGGGAGTAGTTGGATGGTTAGA
AAGGAGAGAGTTGATGCCAACCAAGAATGTGTAAATGTGCGTGCATGACT
TTGTTTGTCTCTTTCTGTTGTGTCCGTGCAGTGTCGAATGAAAGTGAGGA
TGGTGCATCTTGGGGACTCCTTTTGATAAAACCTTGTGATATTGCATGCA
TGCTCGCACGGGCAGGGGGAAAGAGGTTGCTTGAAGTTCCCCTAGAACAA
ACTAAAAAACAAAAAGAAAAATATGAGACTTTATACCA

protein sequence of jgi.p|Nanoce1779_2|584115

>mRNA_3002-protein ID=mRNA_3002-protein|Name=jgi.p|Nanoce1779_2|584115|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MKTAVVLATLFCGAQGFLAPSLPTTDVVARSNSGRLTTKMAEVAGEEPFV
PDMDRRKLMNSILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLVAKDAL
GDDVKVSGWLATHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTH
LGCVVPWNKAENKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNENDDKV
VLTPWTETDFRTNVAPWWK*

mRNA from alignment at scaffold_7:438032..440028+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3002 ID=mRNA_3002|Name=jgi.p|Nanoce1779_2|584115|organism=Nannochloropsis oceanica|type=mRNA|length=1997bp|location=Sequence derived from alignment at scaffold_7:438032..440028+ (Nannochloropsis oceanica)
TGTTTTTGTTCATCAGTTGGTCGGAAGTTGAAGAAAACAATTGTTCTCCC
TCGCTACCCCCGGCTACTTCTACGCTCCTTTTGTTTTGGGATTCACGATG
CAATCGCCACTCGCTTCGACGCAACTCACACACCGTGGACAGGATCATGA
TAAAACGCACGCCGCTGGCAAGCCTTTCCTCGGAGGAGACAACACATAGA
GACTATCGGGAAAAGTTGGGGCCTCACCCGTGGTTACCAAGTGTCGTCTC
TAGCCGCGCTCTTTCTACGGCGTCCGAGGTTTCTTGCCGCCTACTATATT
TACGGAAGATGTGCACACGGACTCATGACGTATCGTATTGTTACGGCATT
TGGCTATGTTGGGCTTTGCCAATCATGACCTAACATGATCACCCCCACGG
CCAGCCATTCCTTCCGACCCGGGGGATCTCACTCCTCACGTATTTGGACC
ACGTTGTCAGATCTCTGGTCACCGCGAAAGAGAACTGAGAAAGAGGGCGA
GGAGAGGCATGGCCTTGCGCCCCGGTACCCAACGACAGCACTACCGGACA
ACGCCTGAAGCATTGCAAACGTAGTCAATGGCAGTGCCGGCAGGATCACA
TGTGCAAGCTCTCAGGGTCTTGCAGGGCTGCATGCTCCCTGTAGTGCAAT
GCTACTGCCACTGCATCACCATACTCACTCGTATCCACGTTTTATCCCAA
GCTTACTTGGTGTGCTCATCATTTTCCCCATCTACCGACCCCATCTAGAC
ACAGGTGAGTTTACTCGAATCGACTTTAATTCCGTCCAATCATGAAGACT
GCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTTCTTGGCGCC
CAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCGGGCGATTGA
CCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTCCCCGACATG
GACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGTGGGCTTGAA
CGTTGCCGGTCTGGCCGTCCCTTACATCGCCTTCTTCGTGCCTCGCACGG
GGGGCGGTGCCGGCGGGGGACTGGTCGCCAAAGATGCGCTAGGTGATGAC
GTGAAGGTGTCGGGCTGGTTGGCCACCCATCAGGCGGGCGATCGCTCCCT
AGTGCAGGGCCTTAAGGGCGACGCCACGTATCTGATCGTGAAGGAGGACA
AGACCATTGAGAACTACGGCTTGAACGCCGTCTGCACGCATTTGGGATGT
GTCGTGCCCTGGAACAAGGCCGAGAACAAATTCATGTGCCCGTGCCACGG
CTCCCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCGCCCCGCTCT
CCCTGGCCCTCGCCCACGTCAACGAGAATGACGACAAGGTCGTGCTGACG
CCCTGGACAGAAACGGATTTCCGAACGAACGTAGCCCCTTGGTACGTACC
GACCGGTGCAGTGATGTATTGTGGTTGGGTGGGCAACTTGTGGCTGTGCC
GCTCAGATGCATTCACCTCTTTCCTCTTTCCTCTCCCCCTCACGACACAG
GTGGAAGTAAATCCTCTTGTGGACAACATAAGGGAGCTGCGCATAGAAAC
TGAGAAGGAAAGCGAGATACAGACACGTATGGATAGGCAGAGAGGGTGAC
TTTTATATCATTCTTTGTAAGCGATCTCCTTGGTCTGGAGAGTAGACGGT
GGCAAAAAGGAGGACCCCGCCCAGAAGTAAAGCACCGGGGGAGTAGTTGG
ATGGTTAGAAAGGAGAGAGTTGATGCCAACCAAGAATGTGTAAATGTGCG
TGCATGACTTTGTTTGTCTCTTTCTGTTGTGTCCGTGCAGTGTCGAATGA
AAGTGAGGATGGTGCATCTTGGGGACTCCTTTTGATAAAACCTTGTGATA
TTGCATGCATGCTCGCACGGGCAGGGGGAAAGAGGTTGCTTGAAGTTCCC
CTAGAACAAACTAAAAAACAAAAAGAAAAATATGAGACTTTATACCA

Coding sequence (CDS) from alignment at scaffold_7:438032..440028+

>mRNA_3002 ID=mRNA_3002|Name=jgi.p|Nanoce1779_2|584115|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_7:438032..440028+ (Nannochloropsis oceanica)
ATGAAGACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTT
CTTGGCGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCG
GGCGATTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTC
CCCGACATGGACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGT
GGGCTTGAACGTTGCCGGTCTGGCCGTCCCTTACATCGCCTTCTTCGTGC
CTCGCACGGGGGGCGGTGCCGGCGGGGGACTGGTCGCCAAAGATGCGCTA
GGTGATGACGTGAAGGTGTCGGGCTGGTTGGCCACCCATCAGGCGGGCGA
TCGCTCCCTAGTGCAGGGCCTTAAGGGCGACGCCACGTATCTGATCGTGA
AGGAGGACAAGACCATTGAGAACTACGGCTTGAACGCCGTCTGCACGCAT
TTGGGATGTGTCGTGCCCTGGAACAAGGCCGAGAACAAATTCATGTGCCC
GTGCCACGGCTCCCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCG
CCCCGCTCTCCCTGGCCCTCGCCCACGTCAACGAGAATGACGACAAGGTC
GTGCTGACGCCCTGGACAGAAACGGATTTCCGAACGAACGTAGCCCCTTG
GTGGAAGTAAATGAAGACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCG
CTCAAGGCTTCTTGGCGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGC
AGCAACAGCGGGCGATTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGA
GCCTTTTGTCCCCGACATGGACCGCCGCAAGCTCATGAATAGCATTTTGT
TGGGCTCCGTGGGCTTGAACGTTGCCGGTCTGGCCGTCCCTTACATCGCC
TTCTTCGTGCCTCGCACGGGGGGCGGTGCCGGCGGGGGACTGGTCGCCAA
AGATGCGCTAGGTGATGACGTGAAGGTGTCGGGCTGGTTGGCCACCCATC
AGGCGGGCGATCGCTCCCTAGTGCAGGGCCTTAAGGGCGACGCCACGTAT
CTGATCGTGAAGGAGGACAAGACCATTGAGAACTACGGCTTGAACGCCGT
CTGCACGCATTTGGGATGTGTCGTGCCCTGGAACAAGGCCGAGAACAAAT
TCATGTGCCCGTGCCACGGCTCCCAGTACGACAAGACCGGCAAGGTCGTG
CGTGGCCCCGCCCCGCTCTCCCTGGCCCTCGCCCACGTCAACGAGAATGA
CGACAAGGTCGTGCTGACGCCCTGGACAGAAACGGATTTCCGAACGAACG
TAGCCCCTTGGTGGAAGTAA

Synonyms

Publications