jgi.p|Nanoce1779_2|584110, mRNA_3000 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584110
Unique Name	mRNA_3000
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1142
Alignment location	scaffold_7:433778..437528 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584196
Track	FilteredModels2
ProteinId	584110

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:433778..437528 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584110	gene_3000	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584110	mRNA_3000-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3000	CDS_3000	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:433778..437528+
coding sequence from alignment at scaffold_7:433778..437528+

mRNA sequence

>mRNA_3000 ID=mRNA_3000|Name=jgi.p|Nanoce1779_2|584110|organism=Nannochloropsis oceanica|type=mRNA|length=1142bp
AGACACAGGTGAGTTTACTCGAATCGACTTTAATTCCGTCCAATCATGAA
GACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTTCTTGG
CGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCGGGCGA
TTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTCCCCGA
CATGGACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGTGGGCT
TGAACGTTGCCGGTCTGGCCGTCCCTTACATCGCCTTCTTCGTGCCTCGC
ACGGGGGGCGGTGCCGGCGGGGGACTGGTCGCCAAAGATGCGCTAGGTGA
TGACGTGAAGGTGTCGGGCTGGTTGGCCACCCATCAGGCGGGCGATCGCT
CCCTAGTGCAGGGCCTTAAGGGCGACGCCACGTATCTGATCGTGAAGGAG
GACAAGACCATTGAGAACTACGGCTTGAACGCCGTCTGCACGCATTTGGG
ATGTGTCGTGCCCTGGAACAAGGCCGAGAACAAATTCATGTGCCCGTGCC
ACGGCTCCCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCGCCCCG
CTCTCCCTGGCCCTCGCCCACGTCAACGAGAATGACGACAAGGTCGTGCT
GACGCCCTGGACAGAAACGGATTTCCGAACGAACGTAGCCCCTTGGTGGA
AGTAAATCCTCTTGTGGACAACATAAGGGAGCTGCGCATAGAAACTGAGA
AGGAAAGCGAGATACAGACACGTATGGATAGGCAGAGAGGGTGACTTTTA
TATCATTCTTTGTAAGCGATCTCCTTGGTCTGGAGTGTAGACGGTGGCAA
AAAGGAGGACCCCGCCCAGAAGTAAAGCACCGGGGGAGTAGTTGGATGGT
TAGAAAGGAGAGAGTTGATGCCAACCAAGAATGTGTAAATGTGCGTGCAT
GACTTTGTTTGTCTCTTTCTGTTGTGTCCGTGCAGTGTCGAATGAAAGTG
AGGATGGTGCATCTTGGGGACTCCTTTTGATAAAACCTTGTGATATTGCA
TGCATGCTCGCACGGGCAGGGGGAAAGAGGTTGCTTGAAGTTCCCCTAGA
ACAAACTAAAAAACAAAAAGAAAAATATGAGACTTTATACCA

protein sequence of jgi.p|Nanoce1779_2|584110

>mRNA_3000-protein ID=mRNA_3000-protein|Name=jgi.p|Nanoce1779_2|584110|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MKTAVVLATLFCGAQGFLAPSLPTTDVVARSNSGRLTTKMAEVAGEEPFV
PDMDRRKLMNSILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLVAKDAL
GDDVKVSGWLATHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTH
LGCVVPWNKAENKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNENDDKV
VLTPWTETDFRTNVAPWWK*

mRNA from alignment at scaffold_7:433778..437528+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3000 ID=mRNA_3000|Name=jgi.p|Nanoce1779_2|584110|organism=Nannochloropsis oceanica|type=mRNA|length=3751bp|location=Sequence derived from alignment at scaffold_7:433778..437528+ (Nannochloropsis oceanica)
AGACACAGGTGAGTTTACTCGAATCGACTTTAATTCCGTCCAATCATGAA
GACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTTCTTGG
CGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCGGGCGA
TTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTCCCCGA
CATGGACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGTGGGCT
TGAACGTTGCCGGTCTGGCCGTCCCTTACATCGCCTTCTTCGTGCCTCGC
ACGGGGGGCGGTGCCGGCGGGGGACTGGTCGCCAAAGATGCGCTAGGTGA
TGACGTGAAGGTGTCGGGCTGGTTGGCCACCCATCAGGCGGGCGATCGCT
CCCTAGTGCAGGGCCTTAAGGGCGACGCCACGTATCTGATCGTGAAGGAG
GACAAGACCATTGAGAACTACGGCTTGAACGCCGTCTGCACGCATTTGGG
ATGTGTCGTGCCCTGGAACAAGGCCGAGAACAAATTCATGTGCCCGTGCC
ACGGCTCCCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCGCCCCG
CTCTCCCTGGCCCTCGCCCACGTCAACGAGAATGACGACAAGGTCGTGCT
GACGCCCTGGACAGAAACGGATTTCCGAACGAACGTAGCCCCTTGGTACG
TACCGACCGGTGCAGTGATGTATTGTGGTTGGGTGGGCAACTTGTGGCTG
TGCCGCTCAGATGCATTCACCTCTTTCCTCTTTCCTCTCCCCCTCACGAC
ACAGGTGGAAGTAAATCCTCTTGTGGACAACATAAGGGAGCTGCGCATAG
AAACTGAGAAGGAAAGCGAGATACAGACACGTATGGATAGGCAGAGAGGG
TGACTTTTATATCATTCTTTGTAAGCGATCTCCTTGGTCTGGAGAGTAGA
CGGTGGCAAAAAGGAGGACCCCGCCCAGAAGTAAAGCACCGGGGGAGTAG
TTGGATGGTTAGAAAGGAGAGAGTTGATGCCAACCAAGAATGTGTAAATG
TGCGTGCATGACTTTGTTTGTCTCTTTCTGTTGTGTCCGTGCAGTGTCGA
ATGAAAGTGAGGATGGTGCATCTTGGGGACTCCTTTTGATAAAACCTTGT
GATATTGCATGCATGCTCGCACGGGCAGGGGGAAAGAGGTTGCTTGAAGT
TCCCCTAGAACAAACTAAAAAACAAAAAGAAAAATATGAGACTTTATACC
ATCTCTAAAATTGAGAAAGTGTATTGTTTTTGCATCATTGCGTGAATCCA
CAAAGTGGGTTGTACAGGCCGGTCAGCGGGGTTGGATTCCCCTCCATGTC
CCGCCGCCCCCCTCCTTTTTCCTTCGAGACGTGGTTAGTGACTTGTTTTC
TCGCTCTGTAAGGTGACCTCCTTCCAATTCAATTGATGCATGGCCCTTGC
TCCACCTCGATTACTCGCCTCTCGTCACATGCGCTAGGGGACATGAATGA
GACCTGGACATGTCAGCCGCGACACGATGTCTCGGGACCTGGGGCTCCCG
GACTTGTCATATGTTCCCATCCAACCACTCCAGTGGGTTGACCCATGCAG
TACTCCTCCGTGCCCATCAGTTCAGGCACAGATACGGTAGCTTCCCCTCT
ACCACTCCGTGTCCCTGGGTCTCCATTGACAAGCAAACAAACGGGAACGG
AGAGATCGAGACATAAGAATTGACCACGTCGGTCCGACAGCTGCTTGCTC
CAAATGTTTTTGTTCATCAGTTGGTCGGAAGTTGAAGAAAACAATTGTTC
TCCCTCGCTACCCCCGGCTACTTCTACGCTCCTTTTGTTTTGGGATTCAC
GATGCAATCGCCACTCGCTTCGACGCAACTCACACACCGTGGACAGGATC
ATGATAAAACGCACGCCGCTGGCAAGCCTTTCCTCGGAGGAGACAACACA
TAGAGACTATCGGGAAAAGTTGGGGCCTCACCCGTGGTTACCAAGTGTCG
TCTCTAGCCGCGCTCTTTCTACGGCGTCCGAGGTTTCTTGCCGCCTACTA
TATTTACGGAAGATGTGCACACGGACTCATGACGTATCGTATTGTTACGG
CATTTGGCTATGTTGGGCTTTGCCAATCATGACCTAACATGATCACCCCC
ACGGCCAGCCATTCCTTCCGACCCGGGGGATCTCACTCCTCACGTATTTG
GACCACGTTGTCAGATCTCTGGTCACCGCGAAAGAGAACTGAGAAAGAGG
GCGAGGAGAGGCATGGCCTTGCGCCCCGGTACCCAACGACAGCACTACCG
GACAACGCCTGAAGCATTGCAAACGTAGTCAATGGCAGTGCCGGCAGGAT
CACATGTGCAAGCTCTCAGGGTCTTGCAGGGCTGCATGCTCCCTGTAGTG
CAATGCTACTGCCACTGCATCACCATACTCACTCGTATCCACGTTTTATC
CCAAGCTTACTTGGTGTGCTCATCATTTTCCCCATCTACCGACCCCATCT
AGACACAGGTGTGTTTACTCGAATCGACTTTAATTCCGTCCAATCATGAA
GACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTTCTTGG
CGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCGGGCGA
TTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTCCCCGA
CATGGACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGTGGGCT
TGAACGTTGCCGGTCTGGCCGTCCCTTACATCGCCTTCTTCGTGCCTCGC
ACGGGGGGCGGTGCCGGCGGGGGACTGGTCGCCAAAGATGCGCTAGGTGA
TGACGTGAAGGTGTCGGGCTGGTTGGCCACCCATCAGGCGGGCGATCGCT
CCCTAGTGCAGGGCCTTAAGGGCGACGCCACGTATCTGATCGTGAAGGAG
GACAAGACCATTGAGAACTACGGCTTGAACGCCGTCTGCACGCATTTGGG
ATGTGTCGTGCCCTGGAACAAGGCCGAGAACAAATTCATGTGCCCGTGCC
ACGGCTCCCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCGCCCCG
CTCTCCCTGGCCCTCGCCCACGTCAACGAGAATGACGACAAGGTCGTGCT
GACGCCCTGGACAGAAACGGATTTCCGAACGAACGTAGCCCCTTGGTACG
TACCGACCGGTGCAGTGATGTATTGTGGTTGGGTGGGCAACTTGTGGCTG
TGCCGCTCAGATGCATTCACCTCTTTCCTCTTTCCTCTCCCCCTCACGAC
ACAGGTGGAAGTAAATCCTCTTGTGGACAACATAAGGGAGCTGCGCATAG
AAACTGAGAAGGAAAGCGAGATACAGACACGTATGGATAGGCAGAGAGGG
TGACTTTTATATCATTCTTTGTAAGCGATCTCCTTGGTCTGGAGTGTAGA
CGGTGGCAAAAAGGAGGACCCCGCCCAGAAGTAAAGCACCGGGGGAGTAG
TTGGATGGTTAGAAAGGAGAGAGTTGATGCCAACCAAGAATGTGTAAATG
TGCGTGCATGACTTTGTTTGTCTCTTTCTGTTGTGTCCGTGCAGTGTCGA
ATGAAAGTGAGGATGGTGCATCTTGGGGACTCCTTTTGATAAAACCTTGT
GATATTGCATGCATGCTCGCACGGGCAGGGGGAAAGAGGTTGCTTGAAGT
TCCCCTAGAACAAACTAAAAAACAAAAAGAAAAATATGAGACTTTATACC
A

Coding sequence (CDS) from alignment at scaffold_7:433778..437528+

>mRNA_3000 ID=mRNA_3000|Name=jgi.p|Nanoce1779_2|584110|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_7:433778..437528+ (Nannochloropsis oceanica)
ATGAAGACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTT
CTTGGCGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCG
GGCGATTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTC
CCCGACATGGACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGT
GGGCTTGAACGTTGCCGGTCTGGCCGTCCCTTACATCGCCTTCTTCGTGC
CTCGCACGGGGGGCGGTGCCGGCGGGGGACTGGTCGCCAAAGATGCGCTA
GGTGATGACGTGAAGGTGTCGGGCTGGTTGGCCACCCATCAGGCGGGCGA
TCGCTCCCTAGTGCAGGGCCTTAAGGGCGACGCCACGTATCTGATCGTGA
AGGAGGACAAGACCATTGAGAACTACGGCTTGAACGCCGTCTGCACGCAT
TTGGGATGTGTCGTGCCCTGGAACAAGGCCGAGAACAAATTCATGTGCCC
GTGCCACGGCTCCCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCG
CCCCGCTCTCCCTGGCCCTCGCCCACGTCAACGAGAATGACGACAAGGTC
GTGCTGACGCCCTGGACAGAAACGGATTTCCGAACGAACGTAGCCCCTTG
GTGGAAGTAAATGAAGACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCG
CTCAAGGCTTCTTGGCGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGC
AGCAACAGCGGGCGATTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGA
GCCTTTTGTCCCCGACATGGACCGCCGCAAGCTCATGAATAGCATTTTGT
TGGGCTCCGTGGGCTTGAACGTTGCCGGTCTGGCCGTCCCTTACATCGCC
TTCTTCGTGCCTCGCACGGGGGGCGGTGCCGGCGGGGGACTGGTCGCCAA
AGATGCGCTAGGTGATGACGTGAAGGTGTCGGGCTGGTTGGCCACCCATC
AGGCGGGCGATCGCTCCCTAGTGCAGGGCCTTAAGGGCGACGCCACGTAT
CTGATCGTGAAGGAGGACAAGACCATTGAGAACTACGGCTTGAACGCCGT
CTGCACGCATTTGGGATGTGTCGTGCCCTGGAACAAGGCCGAGAACAAAT
TCATGTGCCCGTGCCACGGCTCCCAGTACGACAAGACCGGCAAGGTCGTG
CGTGGCCCCGCCCCGCTCTCCCTGGCCCTCGCCCACGTCAACGAGAATGA
CGACAAGGTCGTGCTGACGCCCTGGACAGAAACGGATTTCCGAACGAACG
TAGCCCCTTGGTGGAAGTAA

Synonyms

Publications