jgi.p|Nanoce1779_2|576854, mRNA_300 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576854
Unique NamemRNA_300
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1060
Alignment locationscaffold_3:740294..741353 -

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Properties
Property NameValue
TranscriptId576940
TrackFilteredModels2
ProteinId576854
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:740294..741353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576854gene_300Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576854mRNA_300-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_300CDS_300Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_300 ID=mRNA_300|Name=jgi.p|Nanoce1779_2|576854|organism=Nannochloropsis oceanica|type=mRNA|length=1060bp
AGATACCAATGTCTCTTAACCTGGCAAATGGTGCGGTCGTCAAGGCTGAA
GGAGTCTCACACCTGTCTACAGTGTCTCCAAGACTATTAGCAGCCCTTCC
CGCCACAGCTAAGAGACCAATCGCAGGCGCTTATCACGATCATGACTTTG
ACTTTGAAGAGCTCAAAGCCTTAGTCGAGCCGACCCTTCAGAGAGTTCCT
CTACTACTTTCAGGAGACCGAATGCGGCCAGAACCCACGCCTTGCGAGGC
CTGGGACGGGTTTTTTATTCTTCATGCCAGGAAATCTAGTTTTTTCAAGA
CCAGGCGATACTTGGCATTGGAGTTCCCAGAGCTACTCGATGGCATGGGT
ACGTCCACCACGACTCTGCTAGAACTCGGATGTGGGTATGGCTCATCTCT
TGCGGCTGTATTGGATGCAAACTCATCCATTCTTTGCTTTGCGTGTGATT
TGAGCGCCACGGCATTGAGCCTCCTGGATCAAACTCTTGGTCCTGTTCAC
AAGCAGCGATTGGTAACATTTGTGTGTGACGTGGTCGAACAGGACTTCCC
TCACGATGTGGTGCTTCCGGGAAGCATGGATATTGTGCTGATGACGTTTA
TGCTTTCCGCCGTTGGTACACGGGAGGCGCATCACGCTGTTTTCCAACGG
TCTCATGCCGTGCTCCGCCCTGGAGGCTTACTTTTGTTTCGTGACTACGG
ATGGTGCGACGCCAAGATGCTGCAAGGCCGGAAACGGCTAAATACACAGT
TATTCATGCGTGCTGACGGTACGCTTGCCTATTTCTTTAAGGAGGAAGAG
GTGCGGCAGTTGGCCAAAGCGTCGGGATTTCGGGTGCTGGAATGCAAATA
TGCAACTGTGCTATCAAAAAACAGGCGAAAGGGTACGGCCATTCAGCGTG
TCTTTTTGCACGCCAAGCTACAGAGAGATTGGAAGTGATGCAGCTATGAA
GAATAAGAGAAAGTATAACAGCAAAACGCACACGTTATGTGTGGATTTTA
AAGTGTAATTATAAAAGCCAATGACAGTAGAAGGAAGGCTGTCTTGGAAT
ATGTAGTATA
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protein sequence of jgi.p|Nanoce1779_2|576854

>mRNA_300-protein ID=mRNA_300-protein|Name=jgi.p|Nanoce1779_2|576854|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MSLNLANGAVVKAEGVSHLSTVSPRLLAALPATAKRPIAGAYHDHDFDFE
ELKALVEPTLQRVPLLLSGDRMRPEPTPCEAWDGFFILHARKSSFFKTRR
YLALEFPELLDGMGTSTTTLLELGCGYGSSLAAVLDANSSILCFACDLSA
TALSLLDQTLGPVHKQRLVTFVCDVVEQDFPHDVVLPGSMDIVLMTFMLS
AVGTREAHHAVFQRSHAVLRPGGLLLFRDYGWCDAKMLQGRKRLNTQLFM
RADGTLAYFFKEEEVRQLAKASGFRVLECKYATVLSKNRRKGTAIQRVFL
HAKLQRDWK*
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mRNA from alignment at scaffold_3:740294..741353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_300 ID=mRNA_300|Name=jgi.p|Nanoce1779_2|576854|organism=Nannochloropsis oceanica|type=mRNA|length=1060bp|location=Sequence derived from alignment at scaffold_3:740294..741353- (Nannochloropsis oceanica)
AGATACCAATGTCTCTTAACCTGGCAAATGGTGCGGTCGTCAAGGCTGAA
GGAGTCTCACACCTGTCTACAGTGTCTCCAAGACTATTAGCAGCCCTTCC
CGCCACAGCTAAGAGACCAATCGCAGGCGCTTATCACGATCATGACTTTG
ACTTTGAAGAGCTCAAAGCCTTAGTCGAGCCGACCCTTCAGAGAGTTCCT
CTACTACTTTCAGGAGACCGAATGCGGCCAGAACCCACGCCTTGCGAGGC
CTGGGACGGGTTTTTTATTCTTCATGCCAGGAAATCTAGTTTTTTCAAGA
CCAGGCGATACTTGGCATTGGAGTTCCCAGAGCTACTCGATGGCATGGGT
ACGTCCACCACGACTCTGCTAGAACTCGGATGTGGGTATGGCTCATCTCT
TGCGGCTGTATTGGATGCAAACTCATCCATTCTTTGCTTTGCGTGTGATT
TGAGCGCCACGGCATTGAGCCTCCTGGATCAAACTCTTGGTCCTGTTCAC
AAGCAGCGATTGGTAACATTTGTGTGTGACGTGGTCGAACAGGACTTCCC
TCACGATGTGGTGCTTCCGGGAAGCATGGATATTGTGCTGATGACGTTTA
TGCTTTCCGCCGTTGGTACACGGGAGGCGCATCACGCTGTTTTCCAACGG
TCTCATGCCGTGCTCCGCCCTGGAGGCTTACTTTTGTTTCGTGACTACGG
ATGGTGCGACGCCAAGATGCTGCAAGGCCGGAAACGGCTAAATACACAGT
TATTCATGCGTGCTGACGGTACGCTTGCCTATTTCTTTAAGGAGGAAGAG
GTGCGGCAGTTGGCCAAAGCGTCGGGATTTCGGGTGCTGGAATGCAAATA
TGCAACTGTGCTATCAAAAAACAGGCGAAAGGGTACGGCCATTCAGCGTG
TCTTTTTGCACGCCAAGCTACAGAGAGATTGGAAGTGATGCAGCTATGAA
GAATAAGAGAAAGTATAACAGCAAAACGCACACGTTATGTGTGGATTTTA
AAGTGTAATTATAAAAGCCAATGACAGTAGAAGGAAGGCTGTCTTGGAAT
ATGTAGTATA
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Coding sequence (CDS) from alignment at scaffold_3:740294..741353-

>mRNA_300 ID=mRNA_300|Name=jgi.p|Nanoce1779_2|576854|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_3:740294..741353- (Nannochloropsis oceanica)
ATGTCTCTTAACCTGGCAAATGGTGCGGTCGTCAAGGCTGAAGGAGTCTC
ACACCTGTCTACAGTGTCTCCAAGACTATTAGCAGCCCTTCCCGCCACAG
CTAAGAGACCAATCGCAGGCGCTTATCACGATCATGACTTTGACTTTGAA
GAGCTCAAAGCCTTAGTCGAGCCGACCCTTCAGAGAGTTCCTCTACTACT
TTCAGGAGACCGAATGCGGCCAGAACCCACGCCTTGCGAGGCCTGGGACG
GGTTTTTTATTCTTCATGCCAGGAAATCTAGTTTTTTCAAGACCAGGCGA
TACTTGGCATTGGAGTTCCCAGAGCTACTCGATGGCATGGGTACGTCCAC
CACGACTCTGCTAGAACTCGGATGTGGGTATGGCTCATCTCTTGCGGCTG
TATTGGATGCAAACTCATCCATTCTTTGCTTTGCGTGTGATTTGAGCGCC
ACGGCATTGAGCCTCCTGGATCAAACTCTTGGTCCTGTTCACAAGCAGCG
ATTGGTAACATTTGTGTGTGACGTGGTCGAACAGGACTTCCCTCACGATG
TGGTGCTTCCGGGAAGCATGGATATTGTGCTGATGACGTTTATGCTTTCC
GCCGTTGGTACACGGGAGGCGCATCACGCTGTTTTCCAACGGTCTCATGC
CGTGCTCCGCCCTGGAGGCTTACTTTTGTTTCGTGACTACGGATGGTGCG
ACGCCAAGATGCTGCAAGGCCGGAAACGGCTAAATACACAGTTATTCATG
CGTGCTGACGGTACGCTTGCCTATTTCTTTAAGGAGGAAGAGGTGCGGCA
GTTGGCCAAAGCGTCGGGATTTCGGGTGCTGGAATGCAAATATGCAACTG
TGCTATCAAAAAACAGGCGAAAGGGTACGGCCATTCAGCGTGTCTTTTTG
CACGCCAAGCTACAGAGAGATTGGAAGTGA
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Synonyms
Publications