jgi.p|Nanoce1779_2|584104, mRNA_2998 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584104
Unique NamemRNA_2998
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1545
Alignment locationscaffold_7:430875..432528 +

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Properties
Property NameValue
TranscriptId584190
TrackFilteredModels2
ProteinId584104
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:430875..432528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584104gene_2998Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584104mRNA_2998-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2998CDS_2998Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2998 ID=mRNA_2998|Name=jgi.p|Nanoce1779_2|584104|organism=Nannochloropsis oceanica|type=mRNA|length=1545bp
CGGCTCTTGGCCTTGCTGGGCTTTGCCAATCATGACCTAACATGATCACC
CCCACGGCCAGCCATTCCTTCCGACCCGGGGGATCTCACTCCTCACGCAT
TTGGACCACGTTGTCAGATCTCTTGTCACCGCGAAAGAGAACTGAGAAAG
AGGGCGAGGAGAGGCATGGCCTTGCGCCCCGGTACCCAACGACAGCACTA
CCGGACAACGCCTGAAGCATTGCAAACGTAGTCAATGGCAGTGCCGGCAG
GATCACATGTGCAAGCTCTCAGGGTCTTGCAGGGCTGCATGCTCCCTGTA
GTGCAATGCTACTGCCACTGCATCACCATACTCACTCGTATCCACGTTTT
ATCCCAAGCTTACTTGGTGTGCTCATCATTTTCCCCATCTACCGACCCCA
TCTAGACACAGGTGTGTTTACTCGAATCGACTTTAATTCCGTCCAATCAT
GAAGACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTTCT
TGGCGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCGGG
CGATTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTCCC
CGACATGGACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGTGG
GCTTGAACGTTGCCGGTCTGGCCGTCCCTTACATCGCCTTCTTCGTGCCT
CGCACGGGGGGCGGTGCCGGCGGGGGACTGGTCGCCAAAGATGCGCTAGG
TGATGACGTGAAGGTGTCGGGCTGGTTGGCCACCCATCAGGCGGGCGATC
GCTCCCTAGTGCAGGGCCTTAAGGGCGACGCCACGTATCTGATCGTGAAG
GAGGACAAGACCATTGAGAACTACGGCTTGAACGCCGTCTGCACGCATTT
GGGATGTGTCGTGCCCTGGAACAAGGCCGAGAACAAATTCATGTGCCCGT
GCCACGGCTCCCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCGCC
CCGCTCTCCCTGGCCCTCGCCCACGTCAACGAGAATGACGACAAGGTCGT
GCTGACGCCCTGGACAGAAACGGATTTCCGAACGAACGTAGCCCCTTGGT
GGAAGTAAATCCTCTTGTGGACAACATAAGGGAGCTGCGCATAGAAACTG
AGAAGGAAAGCGAGATACAGACACGTATGGATAGGCAGAGAGGGTGACTT
TTATATCATTCTTTGTAAGCGATCTCCTTGGTCTGGAGTGTAGACGGTGG
CAAAAAGGAGGACCCCGCCCAGAAGTAAAGCACCGGGGGAGTAGTTGGAT
GGTTAGAAAGGAGAGAGTTGATGCCAACCAAGAATGTGTAAATGTGCGTG
CATGACTTTGTTTGTCTCTTTCTGTTGTGTCCGTGCAGTGTCGAATGAAA
GTGAGGATGGTGCATCTTGGGGACTCCTTTTGATAAAACCTTGTGATATT
GCATGCATGCTCGCACGGGCAGGGGGAAAGAGGTTGCTTGAAGTTCCCCT
AGAACAAACTAAAAAACAAAAAGAAAAATATGAGACTTTATACCA
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protein sequence of jgi.p|Nanoce1779_2|584104

>mRNA_2998-protein ID=mRNA_2998-protein|Name=jgi.p|Nanoce1779_2|584104|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MKTAVVLATLFCGAQGFLAPSLPTTDVVARSNSGRLTTKMAEVAGEEPFV
PDMDRRKLMNSILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLVAKDAL
GDDVKVSGWLATHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTH
LGCVVPWNKAENKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNENDDKV
VLTPWTETDFRTNVAPWWK*
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mRNA from alignment at scaffold_7:430875..432528+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2998 ID=mRNA_2998|Name=jgi.p|Nanoce1779_2|584104|organism=Nannochloropsis oceanica|type=mRNA|length=1654bp|location=Sequence derived from alignment at scaffold_7:430875..432528+ (Nannochloropsis oceanica)
CGGCTCTTGGCCTTGCTGGGCTTTGCCAATCATGACCTAACATGATCACC
CCCACGGCCAGCCATTCCTTCCGACCCGGGGGATCTCACTCCTCACGCAT
TTGGACCACGTTGTCAGATCTCTTGTCACCGCGAAAGAGAACTGAGAAAG
AGGGCGAGGAGAGGCATGGCCTTGCGCCCCGGTACCCAACGACAGCACTA
CCGGACAACGCCTGAAGCATTGCAAACGTAGTCAATGGCAGTGCCGGCAG
GATCACATGTGCAAGCTCTCAGGGTCTTGCAGGGCTGCATGCTCCCTGTA
GTGCAATGCTACTGCCACTGCATCACCATACTCACTCGTATCCACGTTTT
ATCCCAAGCTTACTTGGTGTGCTCATCATTTTCCCCATCTACCGACCCCA
TCTAGACACAGGTGTGTTTACTCGAATCGACTTTAATTCCGTCCAATCAT
GAAGACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTTCT
TGGCGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCGGG
CGATTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTCCC
CGACATGGACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGTGG
GCTTGAACGTTGCCGGTCTGGCCGTCCCTTACATCGCCTTCTTCGTGCCT
CGCACGGGGGGCGGTGCCGGCGGGGGACTGGTCGCCAAAGATGCGCTAGG
TGATGACGTGAAGGTGTCGGGCTGGTTGGCCACCCATCAGGCGGGCGATC
GCTCCCTAGTGCAGGGCCTTAAGGGCGACGCCACGTATCTGATCGTGAAG
GAGGACAAGACCATTGAGAACTACGGCTTGAACGCCGTCTGCACGCATTT
GGGATGTGTCGTGCCCTGGAACAAGGCCGAGAACAAATTCATGTGCCCGT
GCCACGGCTCCCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCGCC
CCGCTCTCCCTGGCCCTCGCCCACGTCAACGAGAATGACGACAAGGTCGT
GCTGACGCCCTGGACAGAAACGGATTTCCGAACGAACGTAGCCCCTTGGT
ACGTACCGACCGGTGCAGTGATGTATTGTGGTTGGGTGGGCAACTTGTGG
CTGTGCCGCTCAGATGCATTCACCTCTTTCCTCTTTCCTCTCCCCCTCAC
GACACAGGTGGAAGTAAATCCTCTTGTGGACAACATAAGGGAGCTGCGCA
TAGAAACTGAGAAGGAAAGCGAGATACAGACACGTATGGATAGGCAGAGA
GGGTGACTTTTATATCATTCTTTGTAAGCGATCTCCTTGGTCTGGAGTGT
AGACGGTGGCAAAAAGGAGGACCCCGCCCAGAAGTAAAGCACCGGGGGAG
TAGTTGGATGGTTAGAAAGGAGAGAGTTGATGCCAACCAAGAATGTGTAA
ATGTGCGTGCATGACTTTGTTTGTCTCTTTCTGTTGTGTCCGTGCAGTGT
CGAATGAAAGTGAGGATGGTGCATCTTGGGGACTCCTTTTGATAAAACCT
TGTGATATTGCATGCATGCTCGCACGGGCAGGGGGAAAGAGGTTGCTTGA
AGTTCCCCTAGAACAAACTAAAAAACAAAAAGAAAAATATGAGACTTTAT
ACCA
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Coding sequence (CDS) from alignment at scaffold_7:430875..432528+

>mRNA_2998 ID=mRNA_2998|Name=jgi.p|Nanoce1779_2|584104|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_7:430875..432528+ (Nannochloropsis oceanica)
ATGAAGACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTT
CTTGGCGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCG
GGCGATTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTC
CCCGACATGGACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGT
GGGCTTGAACGTTGCCGGTCTGGCCGTCCCTTACATCGCCTTCTTCGTGC
CTCGCACGGGGGGCGGTGCCGGCGGGGGACTGGTCGCCAAAGATGCGCTA
GGTGATGACGTGAAGGTGTCGGGCTGGTTGGCCACCCATCAGGCGGGCGA
TCGCTCCCTAGTGCAGGGCCTTAAGGGCGACGCCACGTATCTGATCGTGA
AGGAGGACAAGACCATTGAGAACTACGGCTTGAACGCCGTCTGCACGCAT
TTGGGATGTGTCGTGCCCTGGAACAAGGCCGAGAACAAATTCATGTGCCC
GTGCCACGGCTCCCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCG
CCCCGCTCTCCCTGGCCCTCGCCCACGTCAACGAGAATGACGACAAGGTC
GTGCTGACGCCCTGGACAGAAACGGATTTCCGAACGAACGTAGCCCCTTG
GTGGAAGTAAATGAAGACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCG
CTCAAGGCTTCTTGGCGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGC
AGCAACAGCGGGCGATTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGA
GCCTTTTGTCCCCGACATGGACCGCCGCAAGCTCATGAATAGCATTTTGT
TGGGCTCCGTGGGCTTGAACGTTGCCGGTCTGGCCGTCCCTTACATCGCC
TTCTTCGTGCCTCGCACGGGGGGCGGTGCCGGCGGGGGACTGGTCGCCAA
AGATGCGCTAGGTGATGACGTGAAGGTGTCGGGCTGGTTGGCCACCCATC
AGGCGGGCGATCGCTCCCTAGTGCAGGGCCTTAAGGGCGACGCCACGTAT
CTGATCGTGAAGGAGGACAAGACCATTGAGAACTACGGCTTGAACGCCGT
CTGCACGCATTTGGGATGTGTCGTGCCCTGGAACAAGGCCGAGAACAAAT
TCATGTGCCCGTGCCACGGCTCCCAGTACGACAAGACCGGCAAGGTCGTG
CGTGGCCCCGCCCCGCTCTCCCTGGCCCTCGCCCACGTCAACGAGAATGA
CGACAAGGTCGTGCTGACGCCCTGGACAGAAACGGATTTCCGAACGAACG
TAGCCCCTTGGTGGAAGTAA
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Synonyms
Publications