jgi.p|Nanoce1779_2|584101, mRNA_2997 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584101
Unique Name	mRNA_2997
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2411
Alignment location	scaffold_7:428088..430498 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584187
Track	FilteredModels2
ProteinId	584101

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:428088..430498 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584101	gene_2997	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584101	mRNA_2997-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2997	CDS_2997	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:428088..430498-
coding sequence from alignment at scaffold_7:428088..430498-

mRNA sequence

>mRNA_2997 ID=mRNA_2997|Name=jgi.p|Nanoce1779_2|584101|organism=Nannochloropsis oceanica|type=mRNA|length=2411bp
ACAGCAACCTTTCCACACATATCAAGCAGCCATACAAACGAAGTCATGGA
CTTTTCATCGTCCTCGAAGGCGGCCAGCTGCCTGGTCAAGCGCCTACAGC
AAGCGGGAACGTCTTCCTCCCTGCTCCTGCCGGCCGCTCAACTCCTGTCT
TCGACGCTCATGGCCAAGCCTAGCTTCATGCCCGAGGACGTCGAGGCACC
GGTACAGACCCTTTTGCTTGGCGCATCAAATGAGGCCAAGCGATGGGACT
GTTTGTGCGTAGGACTCTTGGTGTGCAACGATGCCATAGCTCGCATGGCC
CCCGCCCCGGCACTGTCGCCCGCCATTCGAGAGACGCTTTATTCAATCAT
TGCCCGGCACTTGGAACATGACGAACCGCGTGTGCGCGGCCTGGTGGCAA
AGACTTTGGGCTTGCTTTGCACTTTGCCGGCCGTGGGCACGGACGCGTAT
GTGCATTTCCAGGCCCAGTTGTGGGCGAGCGTCGATTCACAACTTGTCCG
GCGCGCCACCGAGACGCGACCGACGAACCTGGGTGCGCTGAGGGACATTC
CCTTGGACGATGTGACGGGCTGGCGAGCGCTTGAAACATCGCTTTTGGCA
TTGCAGGCGGTGGTGGAAGGTTGCGGGCCTGAGTTGGTGCGGCAAGGATT
GCTCTCTTCTAATGACTGGCTGGACAAAGCCGTCTACGCGGCAGCTGCCC
ACACCAATCGTTACGTTCGTGAAGCTGCAATGAAGATGGTGCATGTCCTC
GTGGAGCATTGCTTCAGTGACACCAACGAAGAGTTGCTGCCGCTGCCATC
GCTGGCTGTGGTGGCTGCGGAGGGCTTGGCTGATGCCTGGCCTCAGGTCG
TGCATGCTGCTGCTTGTGCCACGCGTAGCCTTTTGGCTGCCGCGCAAATG
GCAGGGAATGAAGACATATTTGATGTGTTGTTACCGCCATTGTGTCAGAG
TCGGTATTATGTTCCGGAGGGGGTTCAAGTGCATGCACAGGAGACGTGGG
TGGCTTTGTTTGCCACTGCGCGAGGGAAGGCGGGAAGTGGACGGGAAACA
GTAGCGAGGTATGTGGGGGAGATGGTGGAGTATCACTGCTATGCTGTTAC
TCACGGCCGTAGTCACTTTGCGAGGGTTGCGGCGTGTTATGCTTTGAAGG
AGTTGGCGGCAAAGTTGGAAGGGGAGGTGGTGCAGCCGTTTGCAGAGCGG
ATGCTGGCGACCGTGCTTCCGTGTTTGGAGGACCATCATTGGGAGGTGCG
GTCGGCGGGTTGTGTAACACTGGCGCAGTTGTTTGAAAACTTTCCGGGGA
TGGTGGTGGGGAAGGAGGAAAAGGTGGTGGGGTTGTGTTTTGCCCGGTTG
GAGGATGAGTCGTGGTCGATCCGGGAAGAGGCTGCGTGGGTTCTGGCCGC
GCTTGTTCGATTTGGTGGAGAAGAAAATGGGATACAAAGTCAGTTAGCGG
CCCGGTTGATGACTTCATTGGAGGCGGTGCGTGCCCAGCCGGTTCAGACG
AAGGAGGAGCAGCTGAAGCTTTACAATGATCCGCAGGCGCACACCGGACG
ACCTACCCTTGGGTGCTGTGGGGGAGAGGTAGCGCAGCCGGCTTCTGCTG
CAGTCCATGGCCACTCGGACACTCCCTCCTCGTCGCCTTGCCGTTACAAG
GCGCAACCGTGGGAGGTCTCGGAGGGGGCTTTGTACCTTTTCCGAGAGCT
GTGTGCCGAGGACGTGCGCCCGGGCGGGAAGGAGGGTGTATTTGCGGAGA
CTTACCTACCTATGTTAGCTGAGCTTGGGCGCCTGCAGCACTTTGCAGAT
GCCGACCGCTTGCGTCAGAGCCTATGGCGGGTCTTACCTGATGCGATGCA
GAAATTGGGAAAGTCAGTTCTGAAGCGGCATCTAGAGCTGTTCACCCCTG
CCTTGCTCGATGCTTTGGCTTCCCCGTTGGTTAGCCCGCTGACCCGTCAC
AACGCTGTCAAGTGCCTGGAGGAATTGAGCCGACAGATTGGACCTTCTAT
TTTCCTTGGGCGGCTTTCAGAGGAGGAGCGGGGGCTCTACCTGCGTCATG
CTTCCTTTTCCTCTTCCTTGTTATATCCGTCAGCAGTTGCTGTTGGTGAG
GTGGTGCCTGCGGCGATGCGGCAGTCTCGACCGAGCGTTGTGGGCATGTG
AAAGGAAGAGTATGAATCCCCTTCCTCCCCCCTTATCCCTCAGAGCTGTG
CATGCGTGGAAAGGAAACGCGGATTATAAATTGAAACAGTTGGAAATGCG
GTAGATGGTGTGAGAAGGTAATGTGCGGGATTGGGTGTATAAATTGAAGA
CGACACAACAGAACAACGGCAAGCAAACGAAACAGAAAGATTGACCAAAA
AAACAATCATTTAGGAAAAAGCAAGAAAGGGTAAAACGCACTTCGATATG
ACAAAAGGTCT

protein sequence of jgi.p|Nanoce1779_2|584101

>mRNA_2997-protein ID=mRNA_2997-protein|Name=jgi.p|Nanoce1779_2|584101|organism=Nannochloropsis oceanica|type=polypeptide|length=702bp
MDFSSSSKAASCLVKRLQQAGTSSSLLLPAAQLLSSTLMAKPSFMPEDVE
APVQTLLLGASNEAKRWDCLCVGLLVCNDAIARMAPAPALSPAIRETLYS
IIARHLEHDEPRVRGLVAKTLGLLCTLPAVGTDAYVHFQAQLWASVDSQL
VRRATETRPTNLGALRDIPLDDVTGWRALETSLLALQAVVEGCGPELVRQ
GLLSSNDWLDKAVYAAAAHTNRYVREAAMKMVHVLVEHCFSDTNEELLPL
PSLAVVAAEGLADAWPQVVHAAACATRSLLAAAQMAGNEDIFDVLLPPLC
QSRYYVPEGVQVHAQETWVALFATARGKAGSGRETVARYVGEMVEYHCYA
VTHGRSHFARVAACYALKELAAKLEGEVVQPFAERMLATVLPCLEDHHWE
VRSAGCVTLAQLFENFPGMVVGKEEKVVGLCFARLEDESWSIREEAAWVL
AALVRFGGEENGIQSQLAARLMTSLEAVRAQPVQTKEEQLKLYNDPQAHT
GRPTLGCCGGEVAQPASAAVHGHSDTPSSSPCRYKAQPWEVSEGALYLFR
ELCAEDVRPGGKEGVFAETYLPMLAELGRLQHFADADRLRQSLWRVLPDA
MQKLGKSVLKRHLELFTPALLDALASPLVSPLTRHNAVKCLEELSRQIGP
SIFLGRLSEEERGLYLRHASFSSSLLYPSAVAVGEVVPAAMRQSRPSVVG
M*

mRNA from alignment at scaffold_7:428088..430498-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2997 ID=mRNA_2997|Name=jgi.p|Nanoce1779_2|584101|organism=Nannochloropsis oceanica|type=mRNA|length=2411bp|location=Sequence derived from alignment at scaffold_7:428088..430498- (Nannochloropsis oceanica)
ACAGCAACCTTTCCACACATATCAAGCAGCCATACAAACGAAGTCATGGA
CTTTTCATCGTCCTCGAAGGCGGCCAGCTGCCTGGTCAAGCGCCTACAGC
AAGCGGGAACGTCTTCCTCCCTGCTCCTGCCGGCCGCTCAACTCCTGTCT
TCGACGCTCATGGCCAAGCCTAGCTTCATGCCCGAGGACGTCGAGGCACC
GGTACAGACCCTTTTGCTTGGCGCATCAAATGAGGCCAAGCGATGGGACT
GTTTGTGCGTAGGACTCTTGGTGTGCAACGATGCCATAGCTCGCATGGCC
CCCGCCCCGGCACTGTCGCCCGCCATTCGAGAGACGCTTTATTCAATCAT
TGCCCGGCACTTGGAACATGACGAACCGCGTGTGCGCGGCCTGGTGGCAA
AGACTTTGGGCTTGCTTTGCACTTTGCCGGCCGTGGGCACGGACGCGTAT
GTGCATTTCCAGGCCCAGTTGTGGGCGAGCGTCGATTCACAACTTGTCCG
GCGCGCCACCGAGACGCGACCGACGAACCTGGGTGCGCTGAGGGACATTC
CCTTGGACGATGTGACGGGCTGGCGAGCGCTTGAAACATCGCTTTTGGCA
TTGCAGGCGGTGGTGGAAGGTTGCGGGCCTGAGTTGGTGCGGCAAGGATT
GCTCTCTTCTAATGACTGGCTGGACAAAGCCGTCTACGCGGCAGCTGCCC
ACACCAATCGTTACGTTCGTGAAGCTGCAATGAAGATGGTGCATGTCCTC
GTGGAGCATTGCTTCAGTGACACCAACGAAGAGTTGCTGCCGCTGCCATC
GCTGGCTGTGGTGGCTGCGGAGGGCTTGGCTGATGCCTGGCCTCAGGTCG
TGCATGCTGCTGCTTGTGCCACGCGTAGCCTTTTGGCTGCCGCGCAAATG
GCAGGGAATGAAGACATATTTGATGTGTTGTTACCGCCATTGTGTCAGAG
TCGGTATTATGTTCCGGAGGGGGTTCAAGTGCATGCACAGGAGACGTGGG
TGGCTTTGTTTGCCACTGCGCGAGGGAAGGCGGGAAGTGGACGGGAAACA
GTAGCGAGGTATGTGGGGGAGATGGTGGAGTATCACTGCTATGCTGTTAC
TCACGGCCGTAGTCACTTTGCGAGGGTTGCGGCGTGTTATGCTTTGAAGG
AGTTGGCGGCAAAGTTGGAAGGGGAGGTGGTGCAGCCGTTTGCAGAGCGG
ATGCTGGCGACCGTGCTTCCGTGTTTGGAGGACCATCATTGGGAGGTGCG
GTCGGCGGGTTGTGTAACACTGGCGCAGTTGTTTGAAAACTTTCCGGGGA
TGGTGGTGGGGAAGGAGGAAAAGGTGGTGGGGTTGTGTTTTGCCCGGTTG
GAGGATGAGTCGTGGTCGATCCGGGAAGAGGCTGCGTGGGTTCTGGCCGC
GCTTGTTCGATTTGGTGGAGAAGAAAATGGGATACAAAGTCAGTTAGCGG
CCCGGTTGATGACTTCATTGGAGGCGGTGCGTGCCCAGCCGGTTCAGACG
AAGGAGGAGCAGCTGAAGCTTTACAATGATCCGCAGGCGCACACCGGACG
ACCTACCCTTGGGTGCTGTGGGGGAGAGGTAGCGCAGCCGGCTTCTGCTG
CAGTCCATGGCCACTCGGACACTCCCTCCTCGTCGCCTTGCCGTTACAAG
GCGCAACCGTGGGAGGTCTCGGAGGGGGCTTTGTACCTTTTCCGAGAGCT
GTGTGCCGAGGACGTGCGCCCGGGCGGGAAGGAGGGTGTATTTGCGGAGA
CTTACCTACCTATGTTAGCTGAGCTTGGGCGCCTGCAGCACTTTGCAGAT
GCCGACCGCTTGCGTCAGAGCCTATGGCGGGTCTTACCTGATGCGATGCA
GAAATTGGGAAAGTCAGTTCTGAAGCGGCATCTAGAGCTGTTCACCCCTG
CCTTGCTCGATGCTTTGGCTTCCCCGTTGGTTAGCCCGCTGACCCGTCAC
AACGCTGTCAAGTGCCTGGAGGAATTGAGCCGACAGATTGGACCTTCTAT
TTTCCTTGGGCGGCTTTCAGAGGAGGAGCGGGGGCTCTACCTGCGTCATG
CTTCCTTTTCCTCTTCCTTGTTATATCCGTCAGCAGTTGCTGTTGGTGAG
GTGGTGCCTGCGGCGATGCGGCAGTCTCGACCGAGCGTTGTGGGCATGTG
AAAGGAAGAGTATGAATCCCCTTCCTCCCCCCTTATCCCTCAGAGCTGTG
CATGCGTGGAAAGGAAACGCGGATTATAAATTGAAACAGTTGGAAATGCG
GTAGATGGTGTGAGAAGGTAATGTGCGGGATTGGGTGTATAAATTGAAGA
CGACACAACAGAACAACGGCAAGCAAACGAAACAGAAAGATTGACCAAAA
AAACAATCATTTAGGAAAAAGCAAGAAAGGGTAAAACGCACTTCGATATG
ACAAAAGGTCT

Coding sequence (CDS) from alignment at scaffold_7:428088..430498-

>mRNA_2997 ID=mRNA_2997|Name=jgi.p|Nanoce1779_2|584101|organism=Nannochloropsis oceanica|type=CDS|length=2106bp|location=Sequence derived from alignment at scaffold_7:428088..430498- (Nannochloropsis oceanica)
ATGGACTTTTCATCGTCCTCGAAGGCGGCCAGCTGCCTGGTCAAGCGCCT
ACAGCAAGCGGGAACGTCTTCCTCCCTGCTCCTGCCGGCCGCTCAACTCC
TGTCTTCGACGCTCATGGCCAAGCCTAGCTTCATGCCCGAGGACGTCGAG
GCACCGGTACAGACCCTTTTGCTTGGCGCATCAAATGAGGCCAAGCGATG
GGACTGTTTGTGCGTAGGACTCTTGGTGTGCAACGATGCCATAGCTCGCA
TGGCCCCCGCCCCGGCACTGTCGCCCGCCATTCGAGAGACGCTTTATTCA
ATCATTGCCCGGCACTTGGAACATGACGAACCGCGTGTGCGCGGCCTGGT
GGCAAAGACTTTGGGCTTGCTTTGCACTTTGCCGGCCGTGGGCACGGACG
CGTATGTGCATTTCCAGGCCCAGTTGTGGGCGAGCGTCGATTCACAACTT
GTCCGGCGCGCCACCGAGACGCGACCGACGAACCTGGGTGCGCTGAGGGA
CATTCCCTTGGACGATGTGACGGGCTGGCGAGCGCTTGAAACATCGCTTT
TGGCATTGCAGGCGGTGGTGGAAGGTTGCGGGCCTGAGTTGGTGCGGCAA
GGATTGCTCTCTTCTAATGACTGGCTGGACAAAGCCGTCTACGCGGCAGC
TGCCCACACCAATCGTTACGTTCGTGAAGCTGCAATGAAGATGGTGCATG
TCCTCGTGGAGCATTGCTTCAGTGACACCAACGAAGAGTTGCTGCCGCTG
CCATCGCTGGCTGTGGTGGCTGCGGAGGGCTTGGCTGATGCCTGGCCTCA
GGTCGTGCATGCTGCTGCTTGTGCCACGCGTAGCCTTTTGGCTGCCGCGC
AAATGGCAGGGAATGAAGACATATTTGATGTGTTGTTACCGCCATTGTGT
CAGAGTCGGTATTATGTTCCGGAGGGGGTTCAAGTGCATGCACAGGAGAC
GTGGGTGGCTTTGTTTGCCACTGCGCGAGGGAAGGCGGGAAGTGGACGGG
AAACAGTAGCGAGGTATGTGGGGGAGATGGTGGAGTATCACTGCTATGCT
GTTACTCACGGCCGTAGTCACTTTGCGAGGGTTGCGGCGTGTTATGCTTT
GAAGGAGTTGGCGGCAAAGTTGGAAGGGGAGGTGGTGCAGCCGTTTGCAG
AGCGGATGCTGGCGACCGTGCTTCCGTGTTTGGAGGACCATCATTGGGAG
GTGCGGTCGGCGGGTTGTGTAACACTGGCGCAGTTGTTTGAAAACTTTCC
GGGGATGGTGGTGGGGAAGGAGGAAAAGGTGGTGGGGTTGTGTTTTGCCC
GGTTGGAGGATGAGTCGTGGTCGATCCGGGAAGAGGCTGCGTGGGTTCTG
GCCGCGCTTGTTCGATTTGGTGGAGAAGAAAATGGGATACAAAGTCAGTT
AGCGGCCCGGTTGATGACTTCATTGGAGGCGGTGCGTGCCCAGCCGGTTC
AGACGAAGGAGGAGCAGCTGAAGCTTTACAATGATCCGCAGGCGCACACC
GGACGACCTACCCTTGGGTGCTGTGGGGGAGAGGTAGCGCAGCCGGCTTC
TGCTGCAGTCCATGGCCACTCGGACACTCCCTCCTCGTCGCCTTGCCGTT
ACAAGGCGCAACCGTGGGAGGTCTCGGAGGGGGCTTTGTACCTTTTCCGA
GAGCTGTGTGCCGAGGACGTGCGCCCGGGCGGGAAGGAGGGTGTATTTGC
GGAGACTTACCTACCTATGTTAGCTGAGCTTGGGCGCCTGCAGCACTTTG
CAGATGCCGACCGCTTGCGTCAGAGCCTATGGCGGGTCTTACCTGATGCG
ATGCAGAAATTGGGAAAGTCAGTTCTGAAGCGGCATCTAGAGCTGTTCAC
CCCTGCCTTGCTCGATGCTTTGGCTTCCCCGTTGGTTAGCCCGCTGACCC
GTCACAACGCTGTCAAGTGCCTGGAGGAATTGAGCCGACAGATTGGACCT
TCTATTTTCCTTGGGCGGCTTTCAGAGGAGGAGCGGGGGCTCTACCTGCG
TCATGCTTCCTTTTCCTCTTCCTTGTTATATCCGTCAGCAGTTGCTGTTG
GTGAGGTGGTGCCTGCGGCGATGCGGCAGTCTCGACCGAGCGTTGTGGGC
ATGTGA

Synonyms

Publications