jgi.p|Nanoce1779_2|584098, mRNA_2996 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584098
Unique Name	mRNA_2996
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2387
Alignment location	scaffold_7:425701..428087 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584184
Track	FilteredModels2
ProteinId	584098

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:425701..428087 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584098	gene_2996	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584098	mRNA_2996-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2996	CDS_2996	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:425701..428087+
coding sequence from alignment at scaffold_7:425701..428087+

mRNA sequence

>mRNA_2996 ID=mRNA_2996|Name=jgi.p|Nanoce1779_2|584098|organism=Nannochloropsis oceanica|type=mRNA|length=2387bp
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAGCCACCACCACCGCCGCTTC
ATCAGCACCAACACCACCAGCTTCCGCAGCAACATAAGCAGCAGGAGCAA
GACCACCACATGCCTCCACCCGTTGCGGAGGAGTCCATTGTCCCTAACAA
TGAGTGCGAGTTGCAGCAGCAGAACGAGGCATCGAAGGGAAATGGTGTTC
TATTGCATCATGGCGAGAGTCCTCAGGACATAGGAGGAAGAGGAAACGGT
GCTGCGTCAGCCGCGTCAGGAGGTCCCCTCATAGAAGAGCAGCAGCAGCC
TGTGGTGCTGATGATGGAGGGAGGAGAAGCAGGGATCATCCCCCCCCGCC
GGGAAGGGTTAAACAGAGCCGAGCTTATCGAGCTGTTGGAAGAACAATAC
GAAGAAGCACAGCGGATCGTAAGGCAATCCAAGAAAAGTCGGTACTTGCG
TTCTTTCCGCGAATTCTTAGGGATGGGTAACCATGAAGACAACGTCCCCC
GAAATATGAACCATTGGACAGACCGCATAGGGGGAGGGTACAAAAAATGG
GTTGGGTCGGGGAGGGCCGGTAGCTCCCATGCACGCACCCGGGGATATGT
TGGCGCAGCGAGAAGTATGTTGAGGGCAGTGAAGAGGCATGGATGGGTGA
TAGAGGCAGTAGGGGGGAGTATGGTGACGAGGGGGGAGGTTTTGAGAGCG
ATCGAAAAGCGTAAGGCGGAGCTGCAACAGGTGTGTGATAAGGCGGATGA
GGAGCGGTTACAGGCTTTTTGTCGGTATTTGAGTGGTGGAGGAGGAGGGG
GAGAAGGGAAGGGAGGGGGGAAAGAGGAGGAAGAGGAGTTTCATTTCTCG
TCGGGGGCGTCGTCGTTTGGTATGGATGCGGAGGAAGAGGAGGAAACGGA
GAAGGTGCTAGAGGAGATCAAAGAAGGAGGAGCAGGAAAAGCAACAGGAA
GAGGGGTTGGTGAAATTGCCTCGAAAGTGAGTGCCACTACGATTTCCTCC
GCCGCTGCTGGGCAAATGGTGCTGCCACAGCTGCTGCTGCTGCAGCATGA
GCGAAGGAATGGGTCGGATGGAGGGTTGGTTGGAAGCGTCGACGTTGCGA
CCGAAGGAGGGGAGCGAGTGGTGATGTCATCACAGAAGGACGCGAGTGGA
GGGGGGCAATATGTTCAGAGGGCAGTTGTCCATCACCAACAACAACAATC
ACCACTACAGCAACCACAGCAGCACCAACACCAATATCAACAAGCACCAT
CATCACAACAACAGCAGCAACAAGAAGAGCCGCACCAGCAGCAGCAGCAG
CAGCCATCCACGTCAAGCCCCAAACCAGCCGTGGGGGAAGGACAAAAGAG
AAAGCGACTGATTGTAGAGAGGGAGAGGGGACTGCAGAAACGAATCATGA
TGCTCGAGCAAGAGGTGGATCGCACGACACGTGAGCGGGACAAGGCCCAA
AGACGCGCGCAGAGACTGGAGGAGGAACTAAAGCACCTGCGAGATCGCTT
ACCGCCATTGCCGCCCGTCATGATCAGCTCCCCATCCACAGGTGACTCTC
ATCTGGCCATGTCGATAAATGTTGTTTCGATGCAGCAGCAGCAGCAAATG
TTTGCTGTCGGTACAGCGGAGGGAGATAGCGGTGGAAAGGCGGAGGTGCA
GCAGAACAGAGTCGCTGTTGAAGGGGAGGGGAGGGAACAAGGAAGTGAGA
GAGATGAAGGACAAGATGCAAGAGTAGAGATTATTTGCCCGGGCCACAAG
AAGCAGAAGCAGCAGCAGGAAAAGCGTCACCACGTGGCGCAGAGGGAGTA
CCACGACCATCACCACCACCAGGAGCAACAAGAGCAGCTGCATCAAGGCA
TTCATATATTGGAGGGGCACAAGCATCAGCTGCACCGGCAGCACCAGTCG
CACGCAGAGGAGCCGGAGCAGCACCACCTCCTTCACCATAGGCATATGGA
CAACACTCGATTTGACATGTCCCTCCGCCGGCATCCAAACGGGGAGGAAG
AATTAGAGGAGAGGGAGGAGGATGGGGAAGAGGAAGGGGTGCGTGCTATT
CACGAGGATGCGATAGTTGTGATGGGCGGCGGAAGGGCTGATTTGGATGG
ACATGTTGAGACGGAGGATGGCAATATGACGCAGCAAGGTTGGGCGGATC
CGCAGGATGATATTTGAAAGGACGGAGAGCATGCGGCGGAGGTGTTGTGA
GTGTATATTATGTGAGGTGGAGCAAAGAAGAAGGGTGGAAGAGGACTGAA
GTGTGAGGGTTTGGAACATCACACCAAATGGAGCAAAGTTGAGGCTGCCT
TGCATTCCACACTATCGAGGAGGTTGTAAAATAGATT

protein sequence of jgi.p|Nanoce1779_2|584098

>mRNA_2996-protein ID=mRNA_2996-protein|Name=jgi.p|Nanoce1779_2|584098|organism=Nannochloropsis oceanica|type=polypeptide|length=686bp
MPPPVAEESIVPNNECELQQQNEASKGNGVLLHHGESPQDIGGRGNGAAS
AASGGPLIEEQQQPVVLMMEGGEAGIIPPRREGLNRAELIELLEEQYEEA
QRIVRQSKKSRYLRSFREFLGMGNHEDNVPRNMNHWTDRIGGGYKKWVGS
GRAGSSHARTRGYVGAARSMLRAVKRHGWVIEAVGGSMVTRGEVLRAIEK
RKAELQQVCDKADEERLQAFCRYLSGGGGGGEGKGGGKEEEEEFHFSSGA
SSFGMDAEEEEETEKVLEEIKEGGAGKATGRGVGEIASKVSATTISSAAA
GQMVLPQLLLLQHERRNGSDGGLVGSVDVATEGGERVVMSSQKDASGGGQ
YVQRAVVHHQQQQSPLQQPQQHQHQYQQAPSSQQQQQQEEPHQQQQQQPS
TSSPKPAVGEGQKRKRLIVERERGLQKRIMMLEQEVDRTTRERDKAQRRA
QRLEEELKHLRDRLPPLPPVMISSPSTGDSHLAMSINVVSMQQQQQMFAV
GTAEGDSGGKAEVQQNRVAVEGEGREQGSERDEGQDARVEIICPGHKKQK
QQQEKRHHVAQREYHDHHHHQEQQEQLHQGIHILEGHKHQLHRQHQSHAE
EPEQHHLLHHRHMDNTRFDMSLRRHPNGEEELEEREEDGEEEGVRAIHED
AIVVMGGGRADLDGHVETEDGNMTQQGWADPQDDI*

mRNA from alignment at scaffold_7:425701..428087+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2996 ID=mRNA_2996|Name=jgi.p|Nanoce1779_2|584098|organism=Nannochloropsis oceanica|type=mRNA|length=2387bp|location=Sequence derived from alignment at scaffold_7:425701..428087+ (Nannochloropsis oceanica)
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAGCCACCACCACCGCCGCTTC
ATCAGCACCAACACCACCAGCTTCCGCAGCAACATAAGCAGCAGGAGCAA
GACCACCACATGCCTCCACCCGTTGCGGAGGAGTCCATTGTCCCTAACAA
TGAGTGCGAGTTGCAGCAGCAGAACGAGGCATCGAAGGGAAATGGTGTTC
TATTGCATCATGGCGAGAGTCCTCAGGACATAGGAGGAAGAGGAAACGGT
GCTGCGTCAGCCGCGTCAGGAGGTCCCCTCATAGAAGAGCAGCAGCAGCC
TGTGGTGCTGATGATGGAGGGAGGAGAAGCAGGGATCATCCCCCCCCGCC
GGGAAGGGTTAAACAGAGCCGAGCTTATCGAGCTGTTGGAAGAACAATAC
GAAGAAGCACAGCGGATCGTAAGGCAATCCAAGAAAAGTCGGTACTTGCG
TTCTTTCCGCGAATTCTTAGGGATGGGTAACCATGAAGACAACGTCCCCC
GAAATATGAACCATTGGACAGACCGCATAGGGGGAGGGTACAAAAAATGG
GTTGGGTCGGGGAGGGCCGGTAGCTCCCATGCACGCACCCGGGGATATGT
TGGCGCAGCGAGAAGTATGTTGAGGGCAGTGAAGAGGCATGGATGGGTGA
TAGAGGCAGTAGGGGGGAGTATGGTGACGAGGGGGGAGGTTTTGAGAGCG
ATCGAAAAGCGTAAGGCGGAGCTGCAACAGGTGTGTGATAAGGCGGATGA
GGAGCGGTTACAGGCTTTTTGTCGGTATTTGAGTGGTGGAGGAGGAGGGG
GAGAAGGGAAGGGAGGGGGGAAAGAGGAGGAAGAGGAGTTTCATTTCTCG
TCGGGGGCGTCGTCGTTTGGTATGGATGCGGAGGAAGAGGAGGAAACGGA
GAAGGTGCTAGAGGAGATCAAAGAAGGAGGAGCAGGAAAAGCAACAGGAA
GAGGGGTTGGTGAAATTGCCTCGAAAGTGAGTGCCACTACGATTTCCTCC
GCCGCTGCTGGGCAAATGGTGCTGCCACAGCTGCTGCTGCTGCAGCATGA
GCGAAGGAATGGGTCGGATGGAGGGTTGGTTGGAAGCGTCGACGTTGCGA
CCGAAGGAGGGGAGCGAGTGGTGATGTCATCACAGAAGGACGCGAGTGGA
GGGGGGCAATATGTTCAGAGGGCAGTTGTCCATCACCAACAACAACAATC
ACCACTACAGCAACCACAGCAGCACCAACACCAATATCAACAAGCACCAT
CATCACAACAACAGCAGCAACAAGAAGAGCCGCACCAGCAGCAGCAGCAG
CAGCCATCCACGTCAAGCCCCAAACCAGCCGTGGGGGAAGGACAAAAGAG
AAAGCGACTGATTGTAGAGAGGGAGAGGGGACTGCAGAAACGAATCATGA
TGCTCGAGCAAGAGGTGGATCGCACGACACGTGAGCGGGACAAGGCCCAA
AGACGCGCGCAGAGACTGGAGGAGGAACTAAAGCACCTGCGAGATCGCTT
ACCGCCATTGCCGCCCGTCATGATCAGCTCCCCATCCACAGGTGACTCTC
ATCTGGCCATGTCGATAAATGTTGTTTCGATGCAGCAGCAGCAGCAAATG
TTTGCTGTCGGTACAGCGGAGGGAGATAGCGGTGGAAAGGCGGAGGTGCA
GCAGAACAGAGTCGCTGTTGAAGGGGAGGGGAGGGAACAAGGAAGTGAGA
GAGATGAAGGACAAGATGCAAGAGTAGAGATTATTTGCCCGGGCCACAAG
AAGCAGAAGCAGCAGCAGGAAAAGCGTCACCACGTGGCGCAGAGGGAGTA
CCACGACCATCACCACCACCAGGAGCAACAAGAGCAGCTGCATCAAGGCA
TTCATATATTGGAGGGGCACAAGCATCAGCTGCACCGGCAGCACCAGTCG
CACGCAGAGGAGCCGGAGCAGCACCACCTCCTTCACCATAGGCATATGGA
CAACACTCGATTTGACATGTCCCTCCGCCGGCATCCAAACGGGGAGGAAG
AATTAGAGGAGAGGGAGGAGGATGGGGAAGAGGAAGGGGTGCGTGCTATT
CACGAGGATGCGATAGTTGTGATGGGCGGCGGAAGGGCTGATTTGGATGG
ACATGTTGAGACGGAGGATGGCAATATGACGCAGCAAGGTTGGGCGGATC
CGCAGGATGATATTTGAAAGGACGGAGAGCATGCGGCGGAGGTGTTGTGA
GTGTATATTATGTGAGGTGGAGCAAAGAAGAAGGGTGGAAGAGGACTGAA
GTGTGAGGGTTTGGAACATCACACCAAATGGAGCAAAGTTGAGGCTGCCT
TGCATTCCACACTATCGAGGAGGTTGTAAAATAGATT

Coding sequence (CDS) from alignment at scaffold_7:425701..428087+

>mRNA_2996 ID=mRNA_2996|Name=jgi.p|Nanoce1779_2|584098|organism=Nannochloropsis oceanica|type=CDS|length=2058bp|location=Sequence derived from alignment at scaffold_7:425701..428087+ (Nannochloropsis oceanica)
ATGCCTCCACCCGTTGCGGAGGAGTCCATTGTCCCTAACAATGAGTGCGA
GTTGCAGCAGCAGAACGAGGCATCGAAGGGAAATGGTGTTCTATTGCATC
ATGGCGAGAGTCCTCAGGACATAGGAGGAAGAGGAAACGGTGCTGCGTCA
GCCGCGTCAGGAGGTCCCCTCATAGAAGAGCAGCAGCAGCCTGTGGTGCT
GATGATGGAGGGAGGAGAAGCAGGGATCATCCCCCCCCGCCGGGAAGGGT
TAAACAGAGCCGAGCTTATCGAGCTGTTGGAAGAACAATACGAAGAAGCA
CAGCGGATCGTAAGGCAATCCAAGAAAAGTCGGTACTTGCGTTCTTTCCG
CGAATTCTTAGGGATGGGTAACCATGAAGACAACGTCCCCCGAAATATGA
ACCATTGGACAGACCGCATAGGGGGAGGGTACAAAAAATGGGTTGGGTCG
GGGAGGGCCGGTAGCTCCCATGCACGCACCCGGGGATATGTTGGCGCAGC
GAGAAGTATGTTGAGGGCAGTGAAGAGGCATGGATGGGTGATAGAGGCAG
TAGGGGGGAGTATGGTGACGAGGGGGGAGGTTTTGAGAGCGATCGAAAAG
CGTAAGGCGGAGCTGCAACAGGTGTGTGATAAGGCGGATGAGGAGCGGTT
ACAGGCTTTTTGTCGGTATTTGAGTGGTGGAGGAGGAGGGGGAGAAGGGA
AGGGAGGGGGGAAAGAGGAGGAAGAGGAGTTTCATTTCTCGTCGGGGGCG
TCGTCGTTTGGTATGGATGCGGAGGAAGAGGAGGAAACGGAGAAGGTGCT
AGAGGAGATCAAAGAAGGAGGAGCAGGAAAAGCAACAGGAAGAGGGGTTG
GTGAAATTGCCTCGAAAGTGAGTGCCACTACGATTTCCTCCGCCGCTGCT
GGGCAAATGGTGCTGCCACAGCTGCTGCTGCTGCAGCATGAGCGAAGGAA
TGGGTCGGATGGAGGGTTGGTTGGAAGCGTCGACGTTGCGACCGAAGGAG
GGGAGCGAGTGGTGATGTCATCACAGAAGGACGCGAGTGGAGGGGGGCAA
TATGTTCAGAGGGCAGTTGTCCATCACCAACAACAACAATCACCACTACA
GCAACCACAGCAGCACCAACACCAATATCAACAAGCACCATCATCACAAC
AACAGCAGCAACAAGAAGAGCCGCACCAGCAGCAGCAGCAGCAGCCATCC
ACGTCAAGCCCCAAACCAGCCGTGGGGGAAGGACAAAAGAGAAAGCGACT
GATTGTAGAGAGGGAGAGGGGACTGCAGAAACGAATCATGATGCTCGAGC
AAGAGGTGGATCGCACGACACGTGAGCGGGACAAGGCCCAAAGACGCGCG
CAGAGACTGGAGGAGGAACTAAAGCACCTGCGAGATCGCTTACCGCCATT
GCCGCCCGTCATGATCAGCTCCCCATCCACAGGTGACTCTCATCTGGCCA
TGTCGATAAATGTTGTTTCGATGCAGCAGCAGCAGCAAATGTTTGCTGTC
GGTACAGCGGAGGGAGATAGCGGTGGAAAGGCGGAGGTGCAGCAGAACAG
AGTCGCTGTTGAAGGGGAGGGGAGGGAACAAGGAAGTGAGAGAGATGAAG
GACAAGATGCAAGAGTAGAGATTATTTGCCCGGGCCACAAGAAGCAGAAG
CAGCAGCAGGAAAAGCGTCACCACGTGGCGCAGAGGGAGTACCACGACCA
TCACCACCACCAGGAGCAACAAGAGCAGCTGCATCAAGGCATTCATATAT
TGGAGGGGCACAAGCATCAGCTGCACCGGCAGCACCAGTCGCACGCAGAG
GAGCCGGAGCAGCACCACCTCCTTCACCATAGGCATATGGACAACACTCG
ATTTGACATGTCCCTCCGCCGGCATCCAAACGGGGAGGAAGAATTAGAGG
AGAGGGAGGAGGATGGGGAAGAGGAAGGGGTGCGTGCTATTCACGAGGAT
GCGATAGTTGTGATGGGCGGCGGAAGGGCTGATTTGGATGGACATGTTGA
GACGGAGGATGGCAATATGACGCAGCAAGGTTGGGCGGATCCGCAGGATG
ATATTTGA

Synonyms

Publications