jgi.p|Nanoce1779_2|392394, mRNA_2993 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|392394
Unique NamemRNA_2993
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1180
Alignment locationscaffold_7:421052..422231 +

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Properties
Property NameValue
TranscriptId392480
TrackFilteredModels2
ProteinId392394
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:421052..422231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|392394gene_2993Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|392394mRNA_2993-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2993CDS_2993Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2993 ID=mRNA_2993|Name=jgi.p|Nanoce1779_2|392394|organism=Nannochloropsis oceanica|type=mRNA|length=1180bp
CTTGAGGTTGGTCAAATTTTGTCGTCAGGAATCCTTTAATCTCGTGCGGA
ACGTCGATGTGCACGTTCCCAGGGCCTGAAGTATGTTCCGGAGCTCCGTG
TGGAATATATATAAAATATAAGTGTTCGCTAGACATGCTACAAGGCGCGA
AACACGTAGAGGGCTGTATTCCACCAACCCATAGCGTATGCACTCAGTCG
GCATTCTCATATGTACAAGGGGATTCTTGCTAAAGTTTGTAATCTGCATA
CACGAAAATGGGGCTTCTTAACATGCTGTCGTCGAGCGTGCATCAGACCG
GCCTGGCTATTTACATCATCGCTCAATCAGTCTTCAGTGGCGTTATAGGA
GGAGAGTCCGAGGGCTTTGTCCCGAGCAAGAAAGATGCCAAGCCCCATCG
ACACCATTTCCCGCACCCTCGCTCGCCTTCGCCCGCAATGACGCCAGAAA
AAGGCTTGCACGCCCCGGTTGAGATAAAGGAGCAACAACATGGGGCTTTG
GGTGGAGTGATGTTTCGAATGAGGAAAGGAGTCAGAGCCGCCGTCCCGTC
GTGGGGCAAGGATGAGCCAGTCGAAATGCCCACGCTTATTATCCCTGGTG
CCGGTGCCACGACGACGCAGACAGAGACGACACAAGCTGAGCAACGCCCC
ACGGAAAGCGAGGAAGGCGGGCAATCTAAGCTTTCGTTTGCTCGAGAGGC
GCAAGGCGACAAAAAGGTAGATACGGCGGCGGAGCAGCAGGAGACGAAGA
TGGGCACTATTGCAGAGAGGAAGGTAGACTTGATGCTGCCGAGGGAGAGG
GAACGGCGATATGAGTACGAAGAAGGGAAGCTGACGGCCTTGAGCCCCCT
TAAGGATCGACCATTTAAGTCAATCACAGTGCATGAATCGAAGGAGGGGG
GATCTTGGGCCGCCCCCGCGGAGATTCATTCAATGTCTTCATACCGGTCT
GGGGCTTTTCGCAAGCGACATGCTCCCACCGGTGGCTTCACAGGTGGCCC
GCCCCAGATTGATTCTAACGCGAAGGAGTTGAAGTGCATTATCATGTAAA
ATGTCAAAGAGAGCGGAAGAAAAGTTGAGAAAACCAGTAAAAGCAAAATA
TGCACACGTTAGAGGGAGGATGGAAGAGAAGGGGTATGCACAGACAAAAT
ATAGACAAACAGAGAAAAAATCGGTAAAAA
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protein sequence of jgi.p|Nanoce1779_2|392394

>mRNA_2993-protein ID=mRNA_2993-protein|Name=jgi.p|Nanoce1779_2|392394|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MGLLNMLSSSVHQTGLAIYIIAQSVFSGVIGGESEGFVPSKKDAKPHRHH
FPHPRSPSPAMTPEKGLHAPVEIKEQQHGALGGVMFRMRKGVRAAVPSWG
KDEPVEMPTLIIPGAGATTTQTETTQAEQRPTESEEGGQSKLSFAREAQG
DKKVDTAAEQQETKMGTIAERKVDLMLPRERERRYEYEEGKLTALSPLKD
RPFKSITVHESKEGGSWAAPAEIHSMSSYRSGAFRKRHAPTGGFTGGPPQ
IDSNAKELKCIIM*
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mRNA from alignment at scaffold_7:421052..422231+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2993 ID=mRNA_2993|Name=jgi.p|Nanoce1779_2|392394|organism=Nannochloropsis oceanica|type=mRNA|length=1180bp|location=Sequence derived from alignment at scaffold_7:421052..422231+ (Nannochloropsis oceanica)
CTTGAGGTTGGTCAAATTTTGTCGTCAGGAATCCTTTAATCTCGTGCGGA
ACGTCGATGTGCACGTTCCCAGGGCCTGAAGTATGTTCCGGAGCTCCGTG
TGGAATATATATAAAATATAAGTGTTCGCTAGACATGCTACAAGGCGCGA
AACACGTAGAGGGCTGTATTCCACCAACCCATAGCGTATGCACTCAGTCG
GCATTCTCATATGTACAAGGGGATTCTTGCTAAAGTTTGTAATCTGCATA
CACGAAAATGGGGCTTCTTAACATGCTGTCGTCGAGCGTGCATCAGACCG
GCCTGGCTATTTACATCATCGCTCAATCAGTCTTCAGTGGCGTTATAGGA
GGAGAGTCCGAGGGCTTTGTCCCGAGCAAGAAAGATGCCAAGCCCCATCG
ACACCATTTCCCGCACCCTCGCTCGCCTTCGCCCGCAATGACGCCAGAAA
AAGGCTTGCACGCCCCGGTTGAGATAAAGGAGCAACAACATGGGGCTTTG
GGTGGAGTGATGTTTCGAATGAGGAAAGGAGTCAGAGCCGCCGTCCCGTC
GTGGGGCAAGGATGAGCCAGTCGAAATGCCCACGCTTATTATCCCTGGTG
CCGGTGCCACGACGACGCAGACAGAGACGACACAAGCTGAGCAACGCCCC
ACGGAAAGCGAGGAAGGCGGGCAATCTAAGCTTTCGTTTGCTCGAGAGGC
GCAAGGCGACAAAAAGGTAGATACGGCGGCGGAGCAGCAGGAGACGAAGA
TGGGCACTATTGCAGAGAGGAAGGTAGACTTGATGCTGCCGAGGGAGAGG
GAACGGCGATATGAGTACGAAGAAGGGAAGCTGACGGCCTTGAGCCCCCT
TAAGGATCGACCATTTAAGTCAATCACAGTGCATGAATCGAAGGAGGGGG
GATCTTGGGCCGCCCCCGCGGAGATTCATTCAATGTCTTCATACCGGTCT
GGGGCTTTTCGCAAGCGACATGCTCCCACCGGTGGCTTCACAGGTGGCCC
GCCCCAGATTGATTCTAACGCGAAGGAGTTGAAGTGCATTATCATGTAAA
ATGTCAAAGAGAGCGGAAGAAAAGTTGAGAAAACCAGTAAAAGCAAAATA
TGCACACGTTAGAGGGAGGATGGAAGAGAAGGGGTATGCACAGACAAAAT
ATAGACAAACAGAGAAAAAATCGGTAAAAA
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Coding sequence (CDS) from alignment at scaffold_7:421052..422231+

>mRNA_2993 ID=mRNA_2993|Name=jgi.p|Nanoce1779_2|392394|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_7:421052..422231+ (Nannochloropsis oceanica)
ATGGGGCTTCTTAACATGCTGTCGTCGAGCGTGCATCAGACCGGCCTGGC
TATTTACATCATCGCTCAATCAGTCTTCAGTGGCGTTATAGGAGGAGAGT
CCGAGGGCTTTGTCCCGAGCAAGAAAGATGCCAAGCCCCATCGACACCAT
TTCCCGCACCCTCGCTCGCCTTCGCCCGCAATGACGCCAGAAAAAGGCTT
GCACGCCCCGGTTGAGATAAAGGAGCAACAACATGGGGCTTTGGGTGGAG
TGATGTTTCGAATGAGGAAAGGAGTCAGAGCCGCCGTCCCGTCGTGGGGC
AAGGATGAGCCAGTCGAAATGCCCACGCTTATTATCCCTGGTGCCGGTGC
CACGACGACGCAGACAGAGACGACACAAGCTGAGCAACGCCCCACGGAAA
GCGAGGAAGGCGGGCAATCTAAGCTTTCGTTTGCTCGAGAGGCGCAAGGC
GACAAAAAGGTAGATACGGCGGCGGAGCAGCAGGAGACGAAGATGGGCAC
TATTGCAGAGAGGAAGGTAGACTTGATGCTGCCGAGGGAGAGGGAACGGC
GATATGAGTACGAAGAAGGGAAGCTGACGGCCTTGAGCCCCCTTAAGGAT
CGACCATTTAAGTCAATCACAGTGCATGAATCGAAGGAGGGGGGATCTTG
GGCCGCCCCCGCGGAGATTCATTCAATGTCTTCATACCGGTCTGGGGCTT
TTCGCAAGCGACATGCTCCCACCGGTGGCTTCACAGGTGGCCCGCCCCAG
ATTGATTCTAACGCGAAGGAGTTGAAGTGCATTATCATGTAA
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Synonyms
Publications