jgi.p|Nanoce1779_2|629264, mRNA_2990 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|629264
Unique Name	mRNA_2990
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2255
Alignment location	scaffold_7:415080..417334 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	629350
Track	FilteredModels2
ProteinId	629264

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:415080..417334 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629264	gene_2990	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629264	mRNA_2990-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2990	CDS_2990	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:415080..417334-
coding sequence from alignment at scaffold_7:415080..417334-

mRNA sequence

>mRNA_2990 ID=mRNA_2990|Name=jgi.p|Nanoce1779_2|629264|organism=Nannochloropsis oceanica|type=mRNA|length=2255bp
GTGTCATGTGTAATGGTTGGCGTAGACTTGGGTAAGCGTAAATCGGAAGA
AAAGGAGAAGAGATAGTTGAGATGATAATGGCATGCATCGAGGGACCCAA
ATAGAAGGACTCACACCACAACTATTGCATTACTCGAAATCTTCGTACAC
AGCCATAGATGCCAGGTACAATTTTGGCGTAGACAAGCGCGCGGATCCAA
TATCAATGAGGGCGATTGTTTGTCAAGGCCGCCGTCCAATCGCTCTCGAC
CTCCTCCCGACGACTCGGAGGTGAATACTACTAGTATTCACCAGTATAGT
ACAGTACCGCAAAGTGACTACCGACTGAGTGTGCCTTCCCTGGGGTTTCC
GCTTTCTCTCGCCACAGAATGACGTCCGCCACTCCCTCCACCACTATAGC
TACCACCACATTTCCACCTCACCTCGATATTTGGCGTGCCGCCAGGGAAG
GAGATTTACCCTTGCTCTCGTACCTGGTGGAAACAAAAGGGCACAATATC
AATAGGATAAACGAGGTCAACGCTTCTCCATTGTACTACGCAGCGCTTTG
CGGCCATGTGGCGTGCGTAGAGTATATGTTGGGGATGGGGGCTGTCGCGG
ACGAAGGCGACTTTATGGGGGAACGATGCTTTTATGCCGCGCTTAATGAC
CCACTCCGGCGCTTGTTGAGACAGAGCAAAATGACACGCGCACACCGCGA
ACCATTTTTGGAGTGCCTACGATTGCTTTTCGAGCAAAAGGATGGATTAT
GGCCTGATGTGAGCTTTCATTACAACACCTCTAGCAACAGCAGGAACAAA
AGTAACACCACGATTGAAATCAGTAGTGGCAGCAGCAGGGAGAACTCTGG
TCGTGCATTTTGGCAATGCCACCAAGTCGTTCTTCGTACCCGCTGCGAGT
TTTTTGCCCGCCAATTCAAACAAGGGAAATGGAAACGCTGCCGGAGGGGT
AAGCACATATCTCCACCTTTCTCCTCTTTTTCATCTATCGCCGTGCTGCA
TTCCCAAGAGGCATTTGCCTGCGTGTTGCAGTATTTATACACGGCGCGGT
TGGAATTGCCATTATATTTACTGAGGGATTGTGTGAAGCTCAGTCATTTG
CTGCGACTGACTGATTTGAAAGAAGAACTTCAGAAAAAAGTAATCGAATG
CGCAATTAGAGAGGAGGAGGAGGAGGAACAGAGGGCCATGGGTGTGGGAG
GTGGATCCAGTCGCCGTCACTTGCTCAAGCAACAGCAGCAGCGACAAAAA
GTATTGATTATCGAGCCAAGAAAAGAGGCGGTAGTTGAGCACTTCAAGGC
GCTAGCCCGGGAGGTTGTGACGAGGTTCCCTGACGATGCTGACGTTGTCA
TTTTCACGGCGGACGGGAAGAGTTTCGCATTGCACCGGGTAATATTGTGT
GCGCGGAGTCAATATTTTAGGACCATGCTCAAGTCAGGTTTTGCGGAGGG
GCAAGGAGGAGGAGGAGGAGGAGGGGAAGCGGTTCCTGGTGCTGGTGCTG
GTGTTGATGCTGGTGCTGGTTCGGTGGAGGAGGGAATAGGTGGGAGGAGG
AAAGCGAGTAGTATCGCCAGCACGGAGGATGGGAAGGAGGAGGGAGCGGA
GGAGGAGGGAGCGGAGGAGGAGGGAGCGAGCAGCGGGGCGCTTCTCTCCA
TCCATCTCTCCATTTCGTCTGAGGCCTTGCGGAAGGTACTGGAGTATATG
TATTGCGATGAGTGTTTGACCCCTCTTTCTGTCCCCGCTGTCTTCGAGGT
TCTCGACGCTGCAACTCGCTACATGCTATCTGGTCTGAGGAAGCAGTGCA
GCAACGCTCTAATGGAAAACGCCGAAGAAATCGACATCTTTTTCTTGTTG
GAGTTGGGGAGAATGTACGACTTGCCACGCCTTGAAAACTTTGTGATGGA
ACGAATGGCAGATATATTGGAGGAGGTGGTGTGGACGGATGAGTTTTTGG
AAATGGTTAGGAAGAGTGCAGCGACGGTGGACAAAAGAGAGGAGATTGAT
TCTATTCCAGTGGTGGATGAGATACGGTTTTTTGTGTATCGCATGCACAA
GTTTGACAGGAACGGGGAGCTGGAAAGGAAATTGGGGTTGATCAATCAGC
TGTTGGAGAAACTGGGATTGGGTTCGTAATTATAAAAGAATGGTAGGAGG
GAAGGAGAGGCGAGGGATTAGAGAAGATTAGTAGATAAGATGTGAAAATG
AAAATGTATTTGACAAGCGAGAGAGAACTGGGAAGAAATATCCGTTGAGT
TATTA

protein sequence of jgi.p|Nanoce1779_2|629264

>mRNA_2990-protein ID=mRNA_2990-protein|Name=jgi.p|Nanoce1779_2|629264|organism=Nannochloropsis oceanica|type=polypeptide|length=587bp
MTSATPSTTIATTTFPPHLDIWRAAREGDLPLLSYLVETKGHNINRINEV
NASPLYYAALCGHVACVEYMLGMGAVADEGDFMGERCFYAALNDPLRRLL
RQSKMTRAHREPFLECLRLLFEQKDGLWPDVSFHYNTSSNSRNKSNTTIE
ISSGSSRENSGRAFWQCHQVVLRTRCEFFARQFKQGKWKRCRRGKHISPP
FSSFSSIAVLHSQEAFACVLQYLYTARLELPLYLLRDCVKLSHLLRLTDL
KEELQKKVIECAIREEEEEEQRAMGVGGGSSRRHLLKQQQQRQKVLIIEP
RKEAVVEHFKALAREVVTRFPDDADVVIFTADGKSFALHRVILCARSQYF
RTMLKSGFAEGQGGGGGGGEAVPGAGAGVDAGAGSVEEGIGGRRKASSIA
STEDGKEEGAEEEGAEEEGASSGALLSIHLSISSEALRKVLEYMYCDECL
TPLSVPAVFEVLDAATRYMLSGLRKQCSNALMENAEEIDIFFLLELGRMY
DLPRLENFVMERMADILEEVVWTDEFLEMVRKSAATVDKREEIDSIPVVD
EIRFFVYRMHKFDRNGELERKLGLINQLLEKLGLGS*

mRNA from alignment at scaffold_7:415080..417334-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2990 ID=mRNA_2990|Name=jgi.p|Nanoce1779_2|629264|organism=Nannochloropsis oceanica|type=mRNA|length=2255bp|location=Sequence derived from alignment at scaffold_7:415080..417334- (Nannochloropsis oceanica)
GTGTCATGTGTAATGGTTGGCGTAGACTTGGGTAAGCGTAAATCGGAAGA
AAAGGAGAAGAGATAGTTGAGATGATAATGGCATGCATCGAGGGACCCAA
ATAGAAGGACTCACACCACAACTATTGCATTACTCGAAATCTTCGTACAC
AGCCATAGATGCCAGGTACAATTTTGGCGTAGACAAGCGCGCGGATCCAA
TATCAATGAGGGCGATTGTTTGTCAAGGCCGCCGTCCAATCGCTCTCGAC
CTCCTCCCGACGACTCGGAGGTGAATACTACTAGTATTCACCAGTATAGT
ACAGTACCGCAAAGTGACTACCGACTGAGTGTGCCTTCCCTGGGGTTTCC
GCTTTCTCTCGCCACAGAATGACGTCCGCCACTCCCTCCACCACTATAGC
TACCACCACATTTCCACCTCACCTCGATATTTGGCGTGCCGCCAGGGAAG
GAGATTTACCCTTGCTCTCGTACCTGGTGGAAACAAAAGGGCACAATATC
AATAGGATAAACGAGGTCAACGCTTCTCCATTGTACTACGCAGCGCTTTG
CGGCCATGTGGCGTGCGTAGAGTATATGTTGGGGATGGGGGCTGTCGCGG
ACGAAGGCGACTTTATGGGGGAACGATGCTTTTATGCCGCGCTTAATGAC
CCACTCCGGCGCTTGTTGAGACAGAGCAAAATGACACGCGCACACCGCGA
ACCATTTTTGGAGTGCCTACGATTGCTTTTCGAGCAAAAGGATGGATTAT
GGCCTGATGTGAGCTTTCATTACAACACCTCTAGCAACAGCAGGAACAAA
AGTAACACCACGATTGAAATCAGTAGTGGCAGCAGCAGGGAGAACTCTGG
TCGTGCATTTTGGCAATGCCACCAAGTCGTTCTTCGTACCCGCTGCGAGT
TTTTTGCCCGCCAATTCAAACAAGGGAAATGGAAACGCTGCCGGAGGGGT
AAGCACATATCTCCACCTTTCTCCTCTTTTTCATCTATCGCCGTGCTGCA
TTCCCAAGAGGCATTTGCCTGCGTGTTGCAGTATTTATACACGGCGCGGT
TGGAATTGCCATTATATTTACTGAGGGATTGTGTGAAGCTCAGTCATTTG
CTGCGACTGACTGATTTGAAAGAAGAACTTCAGAAAAAAGTAATCGAATG
CGCAATTAGAGAGGAGGAGGAGGAGGAACAGAGGGCCATGGGTGTGGGAG
GTGGATCCAGTCGCCGTCACTTGCTCAAGCAACAGCAGCAGCGACAAAAA
GTATTGATTATCGAGCCAAGAAAAGAGGCGGTAGTTGAGCACTTCAAGGC
GCTAGCCCGGGAGGTTGTGACGAGGTTCCCTGACGATGCTGACGTTGTCA
TTTTCACGGCGGACGGGAAGAGTTTCGCATTGCACCGGGTAATATTGTGT
GCGCGGAGTCAATATTTTAGGACCATGCTCAAGTCAGGTTTTGCGGAGGG
GCAAGGAGGAGGAGGAGGAGGAGGGGAAGCGGTTCCTGGTGCTGGTGCTG
GTGTTGATGCTGGTGCTGGTTCGGTGGAGGAGGGAATAGGTGGGAGGAGG
AAAGCGAGTAGTATCGCCAGCACGGAGGATGGGAAGGAGGAGGGAGCGGA
GGAGGAGGGAGCGGAGGAGGAGGGAGCGAGCAGCGGGGCGCTTCTCTCCA
TCCATCTCTCCATTTCGTCTGAGGCCTTGCGGAAGGTACTGGAGTATATG
TATTGCGATGAGTGTTTGACCCCTCTTTCTGTCCCCGCTGTCTTCGAGGT
TCTCGACGCTGCAACTCGCTACATGCTATCTGGTCTGAGGAAGCAGTGCA
GCAACGCTCTAATGGAAAACGCCGAAGAAATCGACATCTTTTTCTTGTTG
GAGTTGGGGAGAATGTACGACTTGCCACGCCTTGAAAACTTTGTGATGGA
ACGAATGGCAGATATATTGGAGGAGGTGGTGTGGACGGATGAGTTTTTGG
AAATGGTTAGGAAGAGTGCAGCGACGGTGGACAAAAGAGAGGAGATTGAT
TCTATTCCAGTGGTGGATGAGATACGGTTTTTTGTGTATCGCATGCACAA
GTTTGACAGGAACGGGGAGCTGGAAAGGAAATTGGGGTTGATCAATCAGC
TGTTGGAGAAACTGGGATTGGGTTCGTAATTATAAAAGAATGGTAGGAGG
GAAGGAGAGGCGAGGGATTAGAGAAGATTAGTAGATAAGATGTGAAAATG
AAAATGTATTTGACAAGCGAGAGAGAACTGGGAAGAAATATCCGTTGAGT
TATTA

Coding sequence (CDS) from alignment at scaffold_7:415080..417334-

>mRNA_2990 ID=mRNA_2990|Name=jgi.p|Nanoce1779_2|629264|organism=Nannochloropsis oceanica|type=CDS|length=1761bp|location=Sequence derived from alignment at scaffold_7:415080..417334- (Nannochloropsis oceanica)
ATGACGTCCGCCACTCCCTCCACCACTATAGCTACCACCACATTTCCACC
TCACCTCGATATTTGGCGTGCCGCCAGGGAAGGAGATTTACCCTTGCTCT
CGTACCTGGTGGAAACAAAAGGGCACAATATCAATAGGATAAACGAGGTC
AACGCTTCTCCATTGTACTACGCAGCGCTTTGCGGCCATGTGGCGTGCGT
AGAGTATATGTTGGGGATGGGGGCTGTCGCGGACGAAGGCGACTTTATGG
GGGAACGATGCTTTTATGCCGCGCTTAATGACCCACTCCGGCGCTTGTTG
AGACAGAGCAAAATGACACGCGCACACCGCGAACCATTTTTGGAGTGCCT
ACGATTGCTTTTCGAGCAAAAGGATGGATTATGGCCTGATGTGAGCTTTC
ATTACAACACCTCTAGCAACAGCAGGAACAAAAGTAACACCACGATTGAA
ATCAGTAGTGGCAGCAGCAGGGAGAACTCTGGTCGTGCATTTTGGCAATG
CCACCAAGTCGTTCTTCGTACCCGCTGCGAGTTTTTTGCCCGCCAATTCA
AACAAGGGAAATGGAAACGCTGCCGGAGGGGTAAGCACATATCTCCACCT
TTCTCCTCTTTTTCATCTATCGCCGTGCTGCATTCCCAAGAGGCATTTGC
CTGCGTGTTGCAGTATTTATACACGGCGCGGTTGGAATTGCCATTATATT
TACTGAGGGATTGTGTGAAGCTCAGTCATTTGCTGCGACTGACTGATTTG
AAAGAAGAACTTCAGAAAAAAGTAATCGAATGCGCAATTAGAGAGGAGGA
GGAGGAGGAACAGAGGGCCATGGGTGTGGGAGGTGGATCCAGTCGCCGTC
ACTTGCTCAAGCAACAGCAGCAGCGACAAAAAGTATTGATTATCGAGCCA
AGAAAAGAGGCGGTAGTTGAGCACTTCAAGGCGCTAGCCCGGGAGGTTGT
GACGAGGTTCCCTGACGATGCTGACGTTGTCATTTTCACGGCGGACGGGA
AGAGTTTCGCATTGCACCGGGTAATATTGTGTGCGCGGAGTCAATATTTT
AGGACCATGCTCAAGTCAGGTTTTGCGGAGGGGCAAGGAGGAGGAGGAGG
AGGAGGGGAAGCGGTTCCTGGTGCTGGTGCTGGTGTTGATGCTGGTGCTG
GTTCGGTGGAGGAGGGAATAGGTGGGAGGAGGAAAGCGAGTAGTATCGCC
AGCACGGAGGATGGGAAGGAGGAGGGAGCGGAGGAGGAGGGAGCGGAGGA
GGAGGGAGCGAGCAGCGGGGCGCTTCTCTCCATCCATCTCTCCATTTCGT
CTGAGGCCTTGCGGAAGGTACTGGAGTATATGTATTGCGATGAGTGTTTG
ACCCCTCTTTCTGTCCCCGCTGTCTTCGAGGTTCTCGACGCTGCAACTCG
CTACATGCTATCTGGTCTGAGGAAGCAGTGCAGCAACGCTCTAATGGAAA
ACGCCGAAGAAATCGACATCTTTTTCTTGTTGGAGTTGGGGAGAATGTAC
GACTTGCCACGCCTTGAAAACTTTGTGATGGAACGAATGGCAGATATATT
GGAGGAGGTGGTGTGGACGGATGAGTTTTTGGAAATGGTTAGGAAGAGTG
CAGCGACGGTGGACAAAAGAGAGGAGATTGATTCTATTCCAGTGGTGGAT
GAGATACGGTTTTTTGTGTATCGCATGCACAAGTTTGACAGGAACGGGGA
GCTGGAAAGGAAATTGGGGTTGATCAATCAGCTGTTGGAGAAACTGGGAT
TGGGTTCGTAA

Synonyms

Publications