jgi.p|Nanoce1779_2|584079, mRNA_2989 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584079
Unique NamemRNA_2989
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1290
Alignment locationscaffold_7:413810..415099 +

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Properties
Property NameValue
TranscriptId584165
TrackFilteredModels2
ProteinId584079
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:413810..415099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584079gene_2989Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584079mRNA_2989-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2989CDS_2989Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2989 ID=mRNA_2989|Name=jgi.p|Nanoce1779_2|584079|organism=Nannochloropsis oceanica|type=mRNA|length=1290bp
GAGGAAATTGGATGAAATCCTTCCGCGCGGTATAGCTACCGCATCGATTT
CTTGCCCATATCCTCGCTCTCCGGCCCAATCTCCACACTTATCTCTCAGC
ACACTCACGACAGGCCACGGCAATGGAGCTGCCGACACATCTTTTTACAC
CTCATTGAAACGATGCCGGTCCTACCACTGACCTCTGAAGGCGCCTCGAC
ACGGCCTCCGTCGTCCTCCTGGCTGTCACGCCTACAATCGAGCGCATGGG
GCGGCGGCAATGAAAGCAGCACATTACCGACGGAAAAGGACCCACAACCG
CCGCAGCAGCAGGCCGGGGTAGGATCTGCAAGTGAGGTGGAGAGAGATGT
GCTTGTCGGTTCGCATGACGAGACCACCAAAAGCACCAATGGAAGCCCCA
TCTTCTCTACCTCCTCCTCCCAAGAGGTCTGGCGGGACAAGCTGCACAAG
GCCCTGCGGGCCAAGGTGATGCTTGTAAGCAACGCCTGGACGGCTACCTT
GGTCCTAACAATTCTACTAGCGGTGGTCTTTCGAGCGCTGCAGCCTACGG
AGGAACCAGGTATCGGTGTGGCGCACTACGCATGGCGTGTTGATCCCCTA
GACCCAGGGCAGCGAAGCCTGGCTGAGCTAGATTTGGATGTGCGTGTGAC
GGGTAGTTTCAGCATGGAATTTGATCCGAGTATAGTGGAGTTGTACCCGA
TGGACGCGGATGAATTGGTGAGTGTAGAGCATCGTGAGGAGGCGGCGTTG
GCTGCTTTGAAACTAGCTGAGGTACCGATCCCGAACTGGAGCTTGACCCG
TGGGCATAACATTGGCATAGTCTCCGCCAAAAAGCCCAGTGGATACTTTT
CTACGGGTCAGAATATTCCAGGTAGGGGACGGGCGGGAGGTGACGACGAA
ATCAAGGAGGTAATTTTGACAGTTAATATGTATGGGTTTGTGACCGTGTT
TGCTTCTTTACCGTCGCGGATTTTCATGAAGTGCTATGTGATGACGGATC
TGGCGAGTGTAAAGGGGCCGAGATGTGAGTCGGTGTACCTGCCGCATATA
AAGAGAGGGGCGGTTGAGGAGGGTGAAGGAGAGGCAGGGAATGGAAGATA
GGATGGAATAGAGTGAGGAAGATGCTACTGTCAGCAAAACAAATATGTTC
GTGTGCATGAAAAGAAACGTAAAATATAAAACCCAGGACAATCTCAATTC
AATTCAAATAAATTAGAAAATAACAAGGATCGAACATGATGGTCGAAAGG
CAATGGACGTCTTTAAGAAGTAATAACTCAACGGATATTT
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protein sequence of jgi.p|Nanoce1779_2|584079

>mRNA_2989-protein ID=mRNA_2989-protein|Name=jgi.p|Nanoce1779_2|584079|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MPVLPLTSEGASTRPPSSSWLSRLQSSAWGGGNESSTLPTEKDPQPPQQQ
AGVGSASEVERDVLVGSHDETTKSTNGSPIFSTSSSQEVWRDKLHKALRA
KVMLVSNAWTATLVLTILLAVVFRALQPTEEPGIGVAHYAWRVDPLDPGQ
RSLAELDLDVRVTGSFSMEFDPSIVELYPMDADELVSVEHREEAALAALK
LAEVPIPNWSLTRGHNIGIVSAKKPSGYFSTGQNIPGRGRAGGDDEIKEV
ILTVNMYGFVTVFASLPSRIFMKCYVMTDLASVKGPRCESVYLPHIKRGA
VEEGEGEAGNGR*
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mRNA from alignment at scaffold_7:413810..415099+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2989 ID=mRNA_2989|Name=jgi.p|Nanoce1779_2|584079|organism=Nannochloropsis oceanica|type=mRNA|length=1290bp|location=Sequence derived from alignment at scaffold_7:413810..415099+ (Nannochloropsis oceanica)
GAGGAAATTGGATGAAATCCTTCCGCGCGGTATAGCTACCGCATCGATTT
CTTGCCCATATCCTCGCTCTCCGGCCCAATCTCCACACTTATCTCTCAGC
ACACTCACGACAGGCCACGGCAATGGAGCTGCCGACACATCTTTTTACAC
CTCATTGAAACGATGCCGGTCCTACCACTGACCTCTGAAGGCGCCTCGAC
ACGGCCTCCGTCGTCCTCCTGGCTGTCACGCCTACAATCGAGCGCATGGG
GCGGCGGCAATGAAAGCAGCACATTACCGACGGAAAAGGACCCACAACCG
CCGCAGCAGCAGGCCGGGGTAGGATCTGCAAGTGAGGTGGAGAGAGATGT
GCTTGTCGGTTCGCATGACGAGACCACCAAAAGCACCAATGGAAGCCCCA
TCTTCTCTACCTCCTCCTCCCAAGAGGTCTGGCGGGACAAGCTGCACAAG
GCCCTGCGGGCCAAGGTGATGCTTGTAAGCAACGCCTGGACGGCTACCTT
GGTCCTAACAATTCTACTAGCGGTGGTCTTTCGAGCGCTGCAGCCTACGG
AGGAACCAGGTATCGGTGTGGCGCACTACGCATGGCGTGTTGATCCCCTA
GACCCAGGGCAGCGAAGCCTGGCTGAGCTAGATTTGGATGTGCGTGTGAC
GGGTAGTTTCAGCATGGAATTTGATCCGAGTATAGTGGAGTTGTACCCGA
TGGACGCGGATGAATTGGTGAGTGTAGAGCATCGTGAGGAGGCGGCGTTG
GCTGCTTTGAAACTAGCTGAGGTACCGATCCCGAACTGGAGCTTGACCCG
TGGGCATAACATTGGCATAGTCTCCGCCAAAAAGCCCAGTGGATACTTTT
CTACGGGTCAGAATATTCCAGGTAGGGGACGGGCGGGAGGTGACGACGAA
ATCAAGGAGGTAATTTTGACAGTTAATATGTATGGGTTTGTGACCGTGTT
TGCTTCTTTACCGTCGCGGATTTTCATGAAGTGCTATGTGATGACGGATC
TGGCGAGTGTAAAGGGGCCGAGATGTGAGTCGGTGTACCTGCCGCATATA
AAGAGAGGGGCGGTTGAGGAGGGTGAAGGAGAGGCAGGGAATGGAAGATA
GGATGGAATAGAGTGAGGAAGATGCTACTGTCAGCAAAACAAATATGTTC
GTGTGCATGAAAAGAAACGTAAAATATAAAACCCAGGACAATCTCAATTC
AATTCAAATAAATTAGAAAATAACAAGGATCGAACATGATGGTCGAAAGG
CAATGGACGTCTTTAAGAAGTAATAACTCAACGGATATTT
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Coding sequence (CDS) from alignment at scaffold_7:413810..415099+

>mRNA_2989 ID=mRNA_2989|Name=jgi.p|Nanoce1779_2|584079|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at scaffold_7:413810..415099+ (Nannochloropsis oceanica)
ATGCCGGTCCTACCACTGACCTCTGAAGGCGCCTCGACACGGCCTCCGTC
GTCCTCCTGGCTGTCACGCCTACAATCGAGCGCATGGGGCGGCGGCAATG
AAAGCAGCACATTACCGACGGAAAAGGACCCACAACCGCCGCAGCAGCAG
GCCGGGGTAGGATCTGCAAGTGAGGTGGAGAGAGATGTGCTTGTCGGTTC
GCATGACGAGACCACCAAAAGCACCAATGGAAGCCCCATCTTCTCTACCT
CCTCCTCCCAAGAGGTCTGGCGGGACAAGCTGCACAAGGCCCTGCGGGCC
AAGGTGATGCTTGTAAGCAACGCCTGGACGGCTACCTTGGTCCTAACAAT
TCTACTAGCGGTGGTCTTTCGAGCGCTGCAGCCTACGGAGGAACCAGGTA
TCGGTGTGGCGCACTACGCATGGCGTGTTGATCCCCTAGACCCAGGGCAG
CGAAGCCTGGCTGAGCTAGATTTGGATGTGCGTGTGACGGGTAGTTTCAG
CATGGAATTTGATCCGAGTATAGTGGAGTTGTACCCGATGGACGCGGATG
AATTGGTGAGTGTAGAGCATCGTGAGGAGGCGGCGTTGGCTGCTTTGAAA
CTAGCTGAGGTACCGATCCCGAACTGGAGCTTGACCCGTGGGCATAACAT
TGGCATAGTCTCCGCCAAAAAGCCCAGTGGATACTTTTCTACGGGTCAGA
ATATTCCAGGTAGGGGACGGGCGGGAGGTGACGACGAAATCAAGGAGGTA
ATTTTGACAGTTAATATGTATGGGTTTGTGACCGTGTTTGCTTCTTTACC
GTCGCGGATTTTCATGAAGTGCTATGTGATGACGGATCTGGCGAGTGTAA
AGGGGCCGAGATGTGAGTCGGTGTACCTGCCGCATATAAAGAGAGGGGCG
GTTGAGGAGGGTGAAGGAGAGGCAGGGAATGGAAGATAG
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Synonyms
Publications