jgi.p|Nanoce1779_2|584078, mRNA_2988 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584078
Unique NamemRNA_2988
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1975
Alignment locationscaffold_7:411698..413672 -

Link to JBrowse

Properties
Property NameValue
TranscriptId584164
TrackFilteredModels2
ProteinId584078
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:411698..413672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584078gene_2988Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584078mRNA_2988-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2988CDS_2988Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2988 ID=mRNA_2988|Name=jgi.p|Nanoce1779_2|584078|organism=Nannochloropsis oceanica|type=mRNA|length=1975bp
CGTGGAACTATGTTGCCACGGCACGCTCGGGGCCTAGTCAAGGACACTCT
CTCCAGAACCACCAACAGCAGCAGCAGGAGCAGCAGCACTATTACACCGA
CAAGGACATCTCGGCTGCCGGCTCACGACCAGCGGACGCTCAAAGATTTT
CTCGCCGCGTCGCATCAAGAAGTCGCATCGACAGCCTACCAAGATAGCTC
TGAGATGAGTGTGCCCACCACGGGCACCACATCCTCCTTCCCAGCCAATC
CCCGGCCCAAAACCTTCACCATTGAAAGCTATGGATGCCAACAAAATGCG
GCCGATTCAGAAGTTGTGCGTGCCATCATGGAGGGGGCCAAGTATAAATG
GGTTGAGGGAGGTGGAGAGCAAGGCCATCACATTGGATGCGACATCGTCT
TCCTCAATACCTGTGCCATTCGTGACAACGCCGAACAACGTATTTGGGGC
CGAATTAAGCACCTTAAACATCCACCTCGGCGGCCACGAAGCGCCACCCC
GGCACCAAGCCGAAGACAAGCACAGGTTTGGCCTCCTCTAAGAGCACTCG
AATACAAAAAGCCCGTGATTGGTTTGTTGGGGTGTATGGCCGAGCGACTC
AAGAAGAAGCTACTGGAAGAGGAAGCGATAGATTTAGTTGTGGGACCCGA
CGCATATAGAGACTTGCCCCGGTTGCTGGACGTGGTGGAGGCGGGGGAGA
AGGGGGTGAATGTGCAATTATCGATGGATGAGACCTATGCGGAAATCAAA
CCTTCGCGTATCTCTCCCGATAACAAAAGCGCCTTTGTCTCAATCATGCG
TGGTTGCAATAACCTTTGCTCATACTGCATTGTCCCCCATACCCGGGGAC
GGGAACGCTCGCGGCCGTTACACAGTATTTTGGAAGAAGTGAGGAGGCTG
GCAGGACAGGGCGTGAAGGAGGTGGTGTTGTTGGGTCAGAATGTGAATTC
GTTCCATGACACCAGCACAAGTACCGCGTCGGTGATTAGTGGGGGGAGGT
ATGAGGCTTCGGAAGGGTTCTCGAACATGTACAAGAGTAGAGATAAGGCC
GGGGCCCGATTCATGGACCTGCTCGAGGCAGTATCAAGGGTGGACGAGGA
GGTGCGCATTCGTTTCACCTCTCCCCACCCAAAGGATTTCCCTCTGCCGT
TACTACAGCTCATTGCCGAACGGCCCTCGATATGTGCGTCATTGCATTTG
CCTGCTCAAAGTGGCAGCAGCACAGTATTGCATCGGATGCGGAGAGGCTA
TACTCGAGAGGCCTACCTGGCCTTGGTTGAGCGGGCGAGGGAGGTGATTC
CCAACGTTTCCTTGTCGTCTGATTTTATCGCGGGGTTTTGTGAGGAAACG
GAGGATGAACACCTAGAGACCTTAAGCTTGATTGAAGCCGTCGGCTATGA
TCAAGCTTTTTTGTTTGCGTATTCCTTGCGGGAGAGGACGCATGCCGCCT
ACCATCTACAAGACAATGTGCCTGAATCCGACAAACAACGACGGCTGGCA
GAGATAATTGCTACTTTTCGTCGTGTTGCCGCCGCGCGTAATGCCGCTGA
GGTTGGGCGGGAGCATCTGTTACTGGTGGAGGGACCGAGCAAGCGATCGA
CCCCGGATAGTCCCACATGGACGGGAAGGAGTGATACGAATAAACGCTGC
ATTTTTCCGTATCGGGACGTGCCTGCGAGCGTGAGGAATGGAGAGGGGAG
GGGACCAATGGTGTCTTTGCAGCCAGGGGATTATGTCTGGGTGCGCGTGA
CCGAGGCCAAGGCGCAGACACTCTTTTGTGACGAGATTTTAGGCCGGAGC
AGTGTGCGGGAGTTTGCTGCTGCGGTTCCTGGCCCTGCTGTTGCCGGCCA
TGGCGCATGGACGAGAACGGGGCATAGAGAGGTGGATGCCGGGGCGTGTA
AACTAGGCTATGTTTTGTCGGAAGTGGAATACAGTATTTAGGGGGAAAAG
GCAAATCAAATTATAAAACAAAGAG
back to top

protein sequence of jgi.p|Nanoce1779_2|584078

>mRNA_2988-protein ID=mRNA_2988-protein|Name=jgi.p|Nanoce1779_2|584078|organism=Nannochloropsis oceanica|type=polypeptide|length=644bp
MLPRHARGLVKDTLSRTTNSSSRSSSTITPTRTSRLPAHDQRTLKDFLAA
SHQEVASTAYQDSSEMSVPTTGTTSSFPANPRPKTFTIESYGCQQNAADS
EVVRAIMEGAKYKWVEGGGEQGHHIGCDIVFLNTCAIRDNAEQRIWGRIK
HLKHPPRRPRSATPAPSRRQAQVWPPLRALEYKKPVIGLLGCMAERLKKK
LLEEEAIDLVVGPDAYRDLPRLLDVVEAGEKGVNVQLSMDETYAEIKPSR
ISPDNKSAFVSIMRGCNNLCSYCIVPHTRGRERSRPLHSILEEVRRLAGQ
GVKEVVLLGQNVNSFHDTSTSTASVISGGRYEASEGFSNMYKSRDKAGAR
FMDLLEAVSRVDEEVRIRFTSPHPKDFPLPLLQLIAERPSICASLHLPAQ
SGSSTVLHRMRRGYTREAYLALVERAREVIPNVSLSSDFIAGFCEETEDE
HLETLSLIEAVGYDQAFLFAYSLRERTHAAYHLQDNVPESDKQRRLAEII
ATFRRVAAARNAAEVGREHLLLVEGPSKRSTPDSPTWTGRSDTNKRCIFP
YRDVPASVRNGEGRGPMVSLQPGDYVWVRVTEAKAQTLFCDEILGRSSVR
EFAAAVPGPAVAGHGAWTRTGHREVDAGACKLGYVLSEVEYSI*
back to top

mRNA from alignment at scaffold_7:411698..413672-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2988 ID=mRNA_2988|Name=jgi.p|Nanoce1779_2|584078|organism=Nannochloropsis oceanica|type=mRNA|length=1975bp|location=Sequence derived from alignment at scaffold_7:411698..413672- (Nannochloropsis oceanica)
CGTGGAACTATGTTGCCACGGCACGCTCGGGGCCTAGTCAAGGACACTCT
CTCCAGAACCACCAACAGCAGCAGCAGGAGCAGCAGCACTATTACACCGA
CAAGGACATCTCGGCTGCCGGCTCACGACCAGCGGACGCTCAAAGATTTT
CTCGCCGCGTCGCATCAAGAAGTCGCATCGACAGCCTACCAAGATAGCTC
TGAGATGAGTGTGCCCACCACGGGCACCACATCCTCCTTCCCAGCCAATC
CCCGGCCCAAAACCTTCACCATTGAAAGCTATGGATGCCAACAAAATGCG
GCCGATTCAGAAGTTGTGCGTGCCATCATGGAGGGGGCCAAGTATAAATG
GGTTGAGGGAGGTGGAGAGCAAGGCCATCACATTGGATGCGACATCGTCT
TCCTCAATACCTGTGCCATTCGTGACAACGCCGAACAACGTATTTGGGGC
CGAATTAAGCACCTTAAACATCCACCTCGGCGGCCACGAAGCGCCACCCC
GGCACCAAGCCGAAGACAAGCACAGGTTTGGCCTCCTCTAAGAGCACTCG
AATACAAAAAGCCCGTGATTGGTTTGTTGGGGTGTATGGCCGAGCGACTC
AAGAAGAAGCTACTGGAAGAGGAAGCGATAGATTTAGTTGTGGGACCCGA
CGCATATAGAGACTTGCCCCGGTTGCTGGACGTGGTGGAGGCGGGGGAGA
AGGGGGTGAATGTGCAATTATCGATGGATGAGACCTATGCGGAAATCAAA
CCTTCGCGTATCTCTCCCGATAACAAAAGCGCCTTTGTCTCAATCATGCG
TGGTTGCAATAACCTTTGCTCATACTGCATTGTCCCCCATACCCGGGGAC
GGGAACGCTCGCGGCCGTTACACAGTATTTTGGAAGAAGTGAGGAGGCTG
GCAGGACAGGGCGTGAAGGAGGTGGTGTTGTTGGGTCAGAATGTGAATTC
GTTCCATGACACCAGCACAAGTACCGCGTCGGTGATTAGTGGGGGGAGGT
ATGAGGCTTCGGAAGGGTTCTCGAACATGTACAAGAGTAGAGATAAGGCC
GGGGCCCGATTCATGGACCTGCTCGAGGCAGTATCAAGGGTGGACGAGGA
GGTGCGCATTCGTTTCACCTCTCCCCACCCAAAGGATTTCCCTCTGCCGT
TACTACAGCTCATTGCCGAACGGCCCTCGATATGTGCGTCATTGCATTTG
CCTGCTCAAAGTGGCAGCAGCACAGTATTGCATCGGATGCGGAGAGGCTA
TACTCGAGAGGCCTACCTGGCCTTGGTTGAGCGGGCGAGGGAGGTGATTC
CCAACGTTTCCTTGTCGTCTGATTTTATCGCGGGGTTTTGTGAGGAAACG
GAGGATGAACACCTAGAGACCTTAAGCTTGATTGAAGCCGTCGGCTATGA
TCAAGCTTTTTTGTTTGCGTATTCCTTGCGGGAGAGGACGCATGCCGCCT
ACCATCTACAAGACAATGTGCCTGAATCCGACAAACAACGACGGCTGGCA
GAGATAATTGCTACTTTTCGTCGTGTTGCCGCCGCGCGTAATGCCGCTGA
GGTTGGGCGGGAGCATCTGTTACTGGTGGAGGGACCGAGCAAGCGATCGA
CCCCGGATAGTCCCACATGGACGGGAAGGAGTGATACGAATAAACGCTGC
ATTTTTCCGTATCGGGACGTGCCTGCGAGCGTGAGGAATGGAGAGGGGAG
GGGACCAATGGTGTCTTTGCAGCCAGGGGATTATGTCTGGGTGCGCGTGA
CCGAGGCCAAGGCGCAGACACTCTTTTGTGACGAGATTTTAGGCCGGAGC
AGTGTGCGGGAGTTTGCTGCTGCGGTTCCTGGCCCTGCTGTTGCCGGCCA
TGGCGCATGGACGAGAACGGGGCATAGAGAGGTGGATGCCGGGGCGTGTA
AACTAGGCTATGTTTTGTCGGAAGTGGAATACAGTATTTAGGGGGAAAAG
GCAAATCAAATTATAAAACAAAGAG
back to top

Coding sequence (CDS) from alignment at scaffold_7:411698..413672-

>mRNA_2988 ID=mRNA_2988|Name=jgi.p|Nanoce1779_2|584078|organism=Nannochloropsis oceanica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_7:411698..413672- (Nannochloropsis oceanica)
ATGTTGCCACGGCACGCTCGGGGCCTAGTCAAGGACACTCTCTCCAGAAC
CACCAACAGCAGCAGCAGGAGCAGCAGCACTATTACACCGACAAGGACAT
CTCGGCTGCCGGCTCACGACCAGCGGACGCTCAAAGATTTTCTCGCCGCG
TCGCATCAAGAAGTCGCATCGACAGCCTACCAAGATAGCTCTGAGATGAG
TGTGCCCACCACGGGCACCACATCCTCCTTCCCAGCCAATCCCCGGCCCA
AAACCTTCACCATTGAAAGCTATGGATGCCAACAAAATGCGGCCGATTCA
GAAGTTGTGCGTGCCATCATGGAGGGGGCCAAGTATAAATGGGTTGAGGG
AGGTGGAGAGCAAGGCCATCACATTGGATGCGACATCGTCTTCCTCAATA
CCTGTGCCATTCGTGACAACGCCGAACAACGTATTTGGGGCCGAATTAAG
CACCTTAAACATCCACCTCGGCGGCCACGAAGCGCCACCCCGGCACCAAG
CCGAAGACAAGCACAGGTTTGGCCTCCTCTAAGAGCACTCGAATACAAAA
AGCCCGTGATTGGTTTGTTGGGGTGTATGGCCGAGCGACTCAAGAAGAAG
CTACTGGAAGAGGAAGCGATAGATTTAGTTGTGGGACCCGACGCATATAG
AGACTTGCCCCGGTTGCTGGACGTGGTGGAGGCGGGGGAGAAGGGGGTGA
ATGTGCAATTATCGATGGATGAGACCTATGCGGAAATCAAACCTTCGCGT
ATCTCTCCCGATAACAAAAGCGCCTTTGTCTCAATCATGCGTGGTTGCAA
TAACCTTTGCTCATACTGCATTGTCCCCCATACCCGGGGACGGGAACGCT
CGCGGCCGTTACACAGTATTTTGGAAGAAGTGAGGAGGCTGGCAGGACAG
GGCGTGAAGGAGGTGGTGTTGTTGGGTCAGAATGTGAATTCGTTCCATGA
CACCAGCACAAGTACCGCGTCGGTGATTAGTGGGGGGAGGTATGAGGCTT
CGGAAGGGTTCTCGAACATGTACAAGAGTAGAGATAAGGCCGGGGCCCGA
TTCATGGACCTGCTCGAGGCAGTATCAAGGGTGGACGAGGAGGTGCGCAT
TCGTTTCACCTCTCCCCACCCAAAGGATTTCCCTCTGCCGTTACTACAGC
TCATTGCCGAACGGCCCTCGATATGTGCGTCATTGCATTTGCCTGCTCAA
AGTGGCAGCAGCACAGTATTGCATCGGATGCGGAGAGGCTATACTCGAGA
GGCCTACCTGGCCTTGGTTGAGCGGGCGAGGGAGGTGATTCCCAACGTTT
CCTTGTCGTCTGATTTTATCGCGGGGTTTTGTGAGGAAACGGAGGATGAA
CACCTAGAGACCTTAAGCTTGATTGAAGCCGTCGGCTATGATCAAGCTTT
TTTGTTTGCGTATTCCTTGCGGGAGAGGACGCATGCCGCCTACCATCTAC
AAGACAATGTGCCTGAATCCGACAAACAACGACGGCTGGCAGAGATAATT
GCTACTTTTCGTCGTGTTGCCGCCGCGCGTAATGCCGCTGAGGTTGGGCG
GGAGCATCTGTTACTGGTGGAGGGACCGAGCAAGCGATCGACCCCGGATA
GTCCCACATGGACGGGAAGGAGTGATACGAATAAACGCTGCATTTTTCCG
TATCGGGACGTGCCTGCGAGCGTGAGGAATGGAGAGGGGAGGGGACCAAT
GGTGTCTTTGCAGCCAGGGGATTATGTCTGGGTGCGCGTGACCGAGGCCA
AGGCGCAGACACTCTTTTGTGACGAGATTTTAGGCCGGAGCAGTGTGCGG
GAGTTTGCTGCTGCGGTTCCTGGCCCTGCTGTTGCCGGCCATGGCGCATG
GACGAGAACGGGGCATAGAGAGGTGGATGCCGGGGCGTGTAAACTAGGCT
ATGTTTTGTCGGAAGTGGAATACAGTATTTAG
back to top
Synonyms
Publications