jgi.p|Nanoce1779_2|584076, mRNA_2987 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584076
Unique NamemRNA_2987
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1405
Alignment locationscaffold_7:409949..411353 +

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Properties
Property NameValue
TranscriptId584162
TrackFilteredModels2
ProteinId584076
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:409949..411353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584076gene_2987Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584076mRNA_2987-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2987CDS_2987Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2987 ID=mRNA_2987|Name=jgi.p|Nanoce1779_2|584076|organism=Nannochloropsis oceanica|type=mRNA|length=1405bp
TCTCTGGTCCCTTCCTCGGTCACGCCGCAACATCCGCTCAATCGCCGCCA
CCTGGGCTTCCAACGACGACATCTGCTCCTGTAGACCACATCCCTCCTTC
GTTCCTTTCTCCTCAACCTGCTCCTTTCCTTTATCAAAGCGCTGCTGCGG
CTGCTGCCGCTGCTGGCATTGCTGCTCCTGGAATCGCTCCTGTGCAAAGT
CGTCTTCCTTCTCATCCTCTTCCTCATACACTGGAGAGGGAAGGTACTCC
AGCAGCTGCTCCTCCAGCTCCATCTTTTCTTCACTCATTCCCGATGCAAT
GCGTGCTGTTGTCGACCTTCTTCTCCTTTCTTCCCTCCTTTCCTTCTTTC
GCTCTTTTGGCCGTGCAGTGGTCGTGGCCGCTGCTGAGACCTTCACCTCT
TTGGGATGCTGCCGTACCACTCCACCAGCACCAGCTTCTGGTCGCTTCCA
GTCGCTTTTTATCTCTCCTCGTTTTCTTCCTCCGTCCTTTCCTACAATGT
TTTGTCCCTTCTTTACTCTCTCGTCGTCCTCCTCGCTCTCCTTGCGAGTT
GGCTGCTTCTGCTTCTTCTCGCGGGTCACCGTTACAGCCGCCACCAGCCT
TCCCTCTCCCCTCCCCTCCTCCTCCGCATTTGCCTTCTTTTCTTCATTCT
CCGCAGGTCCCTTGCGCCATTTCATCTTCTGCTGCAGCTGCTGCTGCTGC
CGTTGCTTCTCGCGACGGGCTAGAAATTGCTGCTCCTTCTGCAGGTCAGA
CGCGGAACGAGGAGCCTTGGGGCTTACGTCAATGATCCCCCCGTGCTGTT
GTTGTCGTCGTTGATGTCGTTGTTGCTGCTTGTCCTTGTCATGGCCGGAG
GAAGACTTGCCGTCGCCCGCCATGGGGACCCACATGACTTCGTAGTGTTG
GGGCTTGCTCTTCTTCTCCTGTTGACGCTGCTCCAGGTTCGGTTGCTTCC
TTAGCGCTGCTGCGGTCACGCGACTCTCCTCCTCCACCAGCACCTCGTCA
CCCACCATCTCCTCCTCCTCCTCTTCCTCCTCGTCACGCATTCGGCGTTT
GCTTTCGTGTGTCTGCGTCTTGTTCTTAACTTTCCGATCCTTCTCCTTGT
GGGCCTTCGTCTCCTTTTTCTTCAGGCTTTTCTTCATTCTTTTCGCGTCC
GGGAGTGGAGACGTGATCAAAGAGGAGGACGGCAACGACGAGTCCTCCTC
TCGGTAATCCCAGGAAGTGTCGGCCGCCATCGCGAGGGATGGTCCTTGGT
GACGAGATGGTCGGTGGTGCGTCCTCGTTTTCGCCGTGGTCTGCTTGGTA
GGCCCGGAGAAGGAAAACTTGAGATCAAGTGGCCGCCCCCCACGCTCCTG
CAGGACCTGGTCCACGATCGCACGCAGGCTGTAGCGCATGGTTCCCACCT
GTCTG
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protein sequence of jgi.p|Nanoce1779_2|584076

>mRNA_2987-protein ID=mRNA_2987-protein|Name=jgi.p|Nanoce1779_2|584076|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MRAVVDLLLLSSLLSFFRSFGRAVVVAAAETFTSLGCCRTTPPAPASGRF
QSLFISPRFLPPSFPTMFCPFFTLSSSSSLSLRVGCFCFFSRVTVTAATS
LPSPLPSSSAFAFFSSFSAGPLRHFIFCCSCCCCRCFSRRARNCCSFCRS
DAERGALGLTSMIPPCCCCRR*
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mRNA from alignment at scaffold_7:409949..411353+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2987 ID=mRNA_2987|Name=jgi.p|Nanoce1779_2|584076|organism=Nannochloropsis oceanica|type=mRNA|length=1405bp|location=Sequence derived from alignment at scaffold_7:409949..411353+ (Nannochloropsis oceanica)
TCTCTGGTCCCTTCCTCGGTCACGCCGCAACATCCGCTCAATCGCCGCCA
CCTGGGCTTCCAACGACGACATCTGCTCCTGTAGACCACATCCCTCCTTC
GTTCCTTTCTCCTCAACCTGCTCCTTTCCTTTATCAAAGCGCTGCTGCGG
CTGCTGCCGCTGCTGGCATTGCTGCTCCTGGAATCGCTCCTGTGCAAAGT
CGTCTTCCTTCTCATCCTCTTCCTCATACACTGGAGAGGGAAGGTACTCC
AGCAGCTGCTCCTCCAGCTCCATCTTTTCTTCACTCATTCCCGATGCAAT
GCGTGCTGTTGTCGACCTTCTTCTCCTTTCTTCCCTCCTTTCCTTCTTTC
GCTCTTTTGGCCGTGCAGTGGTCGTGGCCGCTGCTGAGACCTTCACCTCT
TTGGGATGCTGCCGTACCACTCCACCAGCACCAGCTTCTGGTCGCTTCCA
GTCGCTTTTTATCTCTCCTCGTTTTCTTCCTCCGTCCTTTCCTACAATGT
TTTGTCCCTTCTTTACTCTCTCGTCGTCCTCCTCGCTCTCCTTGCGAGTT
GGCTGCTTCTGCTTCTTCTCGCGGGTCACCGTTACAGCCGCCACCAGCCT
TCCCTCTCCCCTCCCCTCCTCCTCCGCATTTGCCTTCTTTTCTTCATTCT
CCGCAGGTCCCTTGCGCCATTTCATCTTCTGCTGCAGCTGCTGCTGCTGC
CGTTGCTTCTCGCGACGGGCTAGAAATTGCTGCTCCTTCTGCAGGTCAGA
CGCGGAACGAGGAGCCTTGGGGCTTACGTCAATGATCCCCCCGTGCTGTT
GTTGTCGTCGTTGATGTCGTTGTTGCTGCTTGTCCTTGTCATGGCCGGAG
GAAGACTTGCCGTCGCCCGCCATGGGGACCCACATGACTTCGTAGTGTTG
GGGCTTGCTCTTCTTCTCCTGTTGACGCTGCTCCAGGTTCGGTTGCTTCC
TTAGCGCTGCTGCGGTCACGCGACTCTCCTCCTCCACCAGCACCTCGTCA
CCCACCATCTCCTCCTCCTCCTCTTCCTCCTCGTCACGCATTCGGCGTTT
GCTTTCGTGTGTCTGCGTCTTGTTCTTAACTTTCCGATCCTTCTCCTTGT
GGGCCTTCGTCTCCTTTTTCTTCAGGCTTTTCTTCATTCTTTTCGCGTCC
GGGAGTGGAGACGTGATCAAAGAGGAGGACGGCAACGACGAGTCCTCCTC
TCGGTAATCCCAGGAAGTGTCGGCCGCCATCGCGAGGGATGGTCCTTGGT
GACGAGATGGTCGGTGGTGCGTCCTCGTTTTCGCCGTGGTCTGCTTGGTA
GGCCCGGAGAAGGAAAACTTGAGATCAAGTGGCCGCCCCCCACGCTCCTG
CAGGACCTGGTCCACGATCGCACGCAGGCTGTAGCGCATGGTTCCCACCT
GTCTG
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Coding sequence (CDS) from alignment at scaffold_7:409949..411353+

>mRNA_2987 ID=mRNA_2987|Name=jgi.p|Nanoce1779_2|584076|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_7:409949..411353+ (Nannochloropsis oceanica)
ATGCGTGCTGTTGTCGACCTTCTTCTCCTTTCTTCCCTCCTTTCCTTCTT
TCGCTCTTTTGGCCGTGCAGTGGTCGTGGCCGCTGCTGAGACCTTCACCT
CTTTGGGATGCTGCCGTACCACTCCACCAGCACCAGCTTCTGGTCGCTTC
CAGTCGCTTTTTATCTCTCCTCGTTTTCTTCCTCCGTCCTTTCCTACAAT
GTTTTGTCCCTTCTTTACTCTCTCGTCGTCCTCCTCGCTCTCCTTGCGAG
TTGGCTGCTTCTGCTTCTTCTCGCGGGTCACCGTTACAGCCGCCACCAGC
CTTCCCTCTCCCCTCCCCTCCTCCTCCGCATTTGCCTTCTTTTCTTCATT
CTCCGCAGGTCCCTTGCGCCATTTCATCTTCTGCTGCAGCTGCTGCTGCT
GCCGTTGCTTCTCGCGACGGGCTAGAAATTGCTGCTCCTTCTGCAGGTCA
GACGCGGAACGAGGAGCCTTGGGGCTTACGTCAATGATCCCCCCGTGCTG
TTGTTGTCGTCGTTGA
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Synonyms
Publications