jgi.p|Nanoce1779_2|392284, mRNA_2985 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|392284
Unique NamemRNA_2985
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1372
Alignment locationscaffold_7:406120..407916 -

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Properties
Property NameValue
TranscriptId392370
TrackFilteredModels2
ProteinId392284
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:406120..407916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|392284gene_2985Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|392284mRNA_2985-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2985CDS_2985Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2985 ID=mRNA_2985|Name=jgi.p|Nanoce1779_2|392284|organism=Nannochloropsis oceanica|type=mRNA|length=1372bp
CCTTACCACACCATACTTGACAGATGATCGATCCCGCTTGTCGGTCTTTC
CTTCCATCTGCACCACAAGCAACCAACTACAGTCATGACACCACGCATTC
TCTCTTCCGAGGACCTTGAACCCTCCATGACCTCGACCACACGCCAGCGA
GAGCCCAGTGTCAAAAGCCGTCGGGTGGCCATGGCCACGCATGACGAGCT
GACCAACGACCCCATCGCCTGGCCCACCCTCATCCTCTTCGCAGCCTCCC
TCACTACCTACCTCCTCCCTATCCTCCTCTTCCACGACAATCCGACGTAC
TGGACCGTTCCTGTTACAGCGGTGGCGACATATACCATGTTTACGGCCAT
GCACGAAGCGGCCCATCGGGCGATCTCGGCAGAGTATCGATGGGTGAATG
AGCTGATTGGACACATTTCCTCACTGATTTGTTTCCAGGCGCCGTTTCAA
GCATTTCGATTTATTCACTTGAGCCACCACAAGTACACGAATGACCCCAA
AAAAGACCCCGATCATTGGTCAGCCGGACATGGCCCTGAGTGGGTTCAAC
CCTTTTTCTGGTGCACACAAACCCTGCATTATTATTGGCGATACTTCCGT
GACATCTCCTCCCGCCCCTTCGACGAGGCCGCCGAGGCCGTGCTCGTCAC
GCTCGTCATCCTCCTGAGCGTGTCCTTCCTCCTTTCCAAAGGGTGCGGAT
ACCAGCTCTGGATCTTTGTGGGGCTTCCCCGAATGATAACTGACCCTTGC
CTGGCCTACTCGTTTGATTACGCGCCTCACCACCCCCACGAGGCCTCGCG
GGCAGAAGATGTGTATGGGTGCACGGCCATGATCGGTGGCTTGCTCTCTC
CGGACGATGGCGTTGATCTGACGGTGCCCTTGATATATCAGAATTATCAC
AACATCCATCACCTGTACCCGACAATTCCCTTTTACAAGTACCCTCTTAT
GTGGCGCAACCACCGGAAGATCTTGCTTGAGCTGGGAACACCGGTCGGGT
CGTGGTTTGGCCCGCTCGTGTCGAGAAGGGGGGGGAGGGAGCGAGGGGCA
GGGAAGGGAAAGAGGGTGGTTGAGGAGCAAGATCAGCAAAATAATTATCA
TGTGCATGCACAGTGAGGGGAAGGAAGAAGAAAGGAAGCGAGGAAGAAGA
GTAAAAACAGACTGCGTGTGCCTAAAGAGAGGGGAAAGAGAGCATGAAGG
CCAACGTGAGCCTGAGTTAGAGTCTGGGTGGAGGGGAAAAAAGAGCAGCA
AAGGCCGGGACGGGGGAAATGTTGCAACTGTCATGTCACAGATTGTGCCC
ATGCGTGCTCTTTTTGTGCAAGCGTGCGTCGAAATTGAAAACGACAAAGA
CAGAACCCGAGGATAGGCGAGA
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protein sequence of jgi.p|Nanoce1779_2|392284

>mRNA_2985-protein ID=mRNA_2985-protein|Name=jgi.p|Nanoce1779_2|392284|organism=Nannochloropsis oceanica|type=polypeptide|length=344bp
MTPRILSSEDLEPSMTSTTRQREPSVKSRRVAMATHDELTNDPIAWPTLI
LFAASLTTYLLPILLFHDNPTYWTVPVTAVATYTMFTAMHEAAHRAISAE
YRWVNELIGHISSLICFQAPFQAFRFIHLSHHKYTNDPKKDPDHWSAGHG
PEWVQPFFWCTQTLHYYWRYFRDISSRPFDEAAEAVLVTLVILLSVSFLL
SKGCGYQLWIFVGLPRMITDPCLAYSFDYAPHHPHEASRAEDVYGCTAMI
GGLLSPDDGVDLTVPLIYQNYHNIHHLYPTIPFYKYPLMWRNHRKILLEL
GTPVGSWFGPLVSRRGGRERGAGKGKRVVEEQDQQNNYHVHAQ*
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mRNA from alignment at scaffold_7:406120..407916-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2985 ID=mRNA_2985|Name=jgi.p|Nanoce1779_2|392284|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp|location=Sequence derived from alignment at scaffold_7:406120..407916- (Nannochloropsis oceanica)
CCTTACCACACCATACTTGACAGATGATCGATCCCGCTTGTCGGTCTTTC
CTTCCATCTGCACCACAAGCAACCAACTACAGTCATGACACCACGCATTC
TCTCTTCCGAGGACCTTGAACCCTCCATGACCTCGACCACACGCCAGCGA
GAGCCCAGTGTCAAAAGCCGTCGGGTACGTGCTGTGTGTCTTGGCATGCG
AGTATCCAATTCCTATTCCCATACTGTTCTTCTGGGCTGGTGGGGTACCT
GAGGGAAGGCATTTTGATTGTCTCCCCCGACCCGGACTGGGAGTTGTAGC
CATTTTGTGTTTTTTTCTTGTACCATGCTGCCGCTGGGCTTTTTTCTCCT
CGTTTCTACTGATCTTGTTTTTCACATCGCCCGTTCACGTTCTTTCCCGC
CATGTTCTATCCTATATTCAGGTGGCCATGGCCACGCATGACGAGCTGAC
CAACGACCCCATCGCCTGGCCCACCCTCATCCTCTTCGCAGCCTCCCTCA
CTACCTACCTCCTCCCTATCCTCCTCTTCCACGACAATCCGACGTACTGG
ACCGTTCCTGTTACAGCGGTGGCGACATATACCATGTTTACGGCCATGCA
CGAAGCGGCCCATCGGGCGATCTCGGCAGAGTATCGATGGGTGAATGAGC
TGATTGGACACATTTCCTCACTGATTTGTTTCCAGGCGCCGTTTCAAGCA
TTTCGATTTATTCACTTGAGCCACCACAAGTACACGAATGACCCCAAAAA
AGACCCGTGAGTTAATGTGAACCATTGGAACCAGAAGGTGGCGGGAGGGT
CGGGGGGAAGGTGTGTCCATGTGTACGGGATCTATGCACTTTTACACTAA
AATTGTTTTCCTCCGTATAAAACTCGACTCCATCATGCTCAGCATTCCTC
CCTTTCTTTCCCCCCTCTATCTTCTTCAAATCAGCGATCATTGGTCAGCC
GGACATGGCCCTGAGTGGGTTCAACCCTTTTTCTGGTGCACACAAACCCT
GCATTATTATTGGCGATACTTCCGTGACATCTCCTCCCGCCCCTTCGACG
AGGCCGCCGAGGCCGTGCTCGTCACGCTCGTCATCCTCCTGAGCGTGTCC
TTCCTCCTTTCCAAAGGGTGCGGATACCAGCTCTGGATCTTTGTGGGGCT
TCCCCGAATGATAACTGACCCTTGCCTGGCCTACTCGTTTGATTACGCGC
CTCACCACCCCCACGAGGCCTCGCGGGCAGAAGATGTGTATGGGTGCACG
GCCATGATCGGTGGCTTGCTCTCTCCGGACGATGGCGTTGATCTGACGGT
GCCCTTGATATATCAGAATTATCACAACATCCATCACCTGTACCCGACAA
TTCCCTTTTACAAGTACCCTCTTATGTGGCGCAACCACCGGAAGATCTTG
CTTGAGCTGGGAACACCGGTCGGGTCGTGGTTTGGCCCGCTCGTGTCGAG
AAGGGGGGGGAGGGAGCGAGGGGCAGGGAAGGGAAAGAGGGTGGTTGAGG
AGCAAGATCAGCAAAATAATTATCATGTGCATGCACAGTGAGGGGAAGGA
AGAAGAAAGGAAGCGAGGAAGAAGAGTAAAAACAGACTGCGTGTGCCTAA
AGAGAGGGGAAAGAGAGCATGAAGGCCAACGTGAGCCTGAGTTAGAGTCT
GGGTGGAGGGGAAAAAAGAGCAGCAAAGGCCGGGACGGGGGAAATGTTGC
AACTGTCATGTCACAGATTGTGCCCATGCGTGCTCTTTTTGTGCAAGCGT
GCGTCGAAATTGAAAACGACAAAGACAGAACCCGAGGATAGGCGAGA
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Coding sequence (CDS) from alignment at scaffold_7:406120..407916-

>mRNA_2985 ID=mRNA_2985|Name=jgi.p|Nanoce1779_2|392284|organism=Nannochloropsis oceanica|type=CDS|length=3096bp|location=Sequence derived from alignment at scaffold_7:406120..407916- (Nannochloropsis oceanica)
CGATCATTGGTCAGCCGGACATGGCCCTGAGTGGGTTCAACCCTTTTTCT
GGTGCACACAAACCCTGCATTATTATTGGCGATACTTCCGTGACATCTCC
TCCCGCCCCTTCGACGAGGCCGCCGAGGCCGTGCTCGTCACGCTCGTCAT
CCTCCTGAGCGTGTCCTTCCTCCTTTCCAAAGGGTGCGGATACCAGCTCT
GGATCTTTGTGGGGCTTCCCCGAATGATAACTGACCCTTGCCTGGCCTAC
TCGTTTGATTACGCGCCTCACCACCCCCACGAGGCCTCGCGGGCAGAAGA
TGTGTATGGGTGCACGGCCATGATCGGTGGCTTGCTCTCTCCGGACGATG
GCGTTGATCTGACGGTGCCCTTGATATATCAGAATTATCACAACATCCAT
CACCTGTACCCGACAATTCCCTTTTACAAGTACCCTCTTATGTGGCGCAA
CCACCGGAAGATCTTGCTTGAGCTGGGAACACCGGTCGGGTCGTGGTTTG
GCCCGCTCGTGTCGAGAAGGGGGGGGAGGGAGCGAGGGGCAGGGAAGGGA
AAGAGGGTGGTTGAGGAGCAAGATCAGCAAAATAATTATCATGTGCATGC
ACAGTGAGTGGCCATGGCCACGCATGACGAGCTGACCAACGACCCCATCG
CCTGGCCCACCCTCATCCTCTTCGCAGCCTCCCTCACTACCTACCTCCTC
CCTATCCTCCTCTTCCACGACAATCCGACGTACTGGACCGTTCCTGTTAC
AGCGGTGGCGACATATACCATGTTTACGGCCATGCACGAAGCGGCCCATC
GGGCGATCTCGGCAGAGTATCGATGGGTGAATGAGCTGATTGGACACATT
TCCTCACTGATTTGTTTCCAGGCGCCGTTTCAAGCATTTCGATTTATTCA
CTTGAGCCACCACAAGTACACGAATGACCCCAAAAAAGACCCATGACACC
ACGCATTCTCTCTTCCGAGGACCTTGAACCCTCCATGACCTCGACCACAC
GCCAGCGAGAGCCCAGTGTCAAAAGCCGTCGGCGATCATTGGTCAGCCGG
ACATGGCCCTGAGTGGGTTCAACCCTTTTTCTGGTGCACACAAACCCTGC
ATTATTATTGGCGATACTTCCGTGACATCTCCTCCCGCCCCTTCGACGAG
GCCGCCGAGGCCGTGCTCGTCACGCTCGTCATCCTCCTGAGCGTGTCCTT
CCTCCTTTCCAAAGGGTGCGGATACCAGCTCTGGATCTTTGTGGGGCTTC
CCCGAATGATAACTGACCCTTGCCTGGCCTACTCGTTTGATTACGCGCCT
CACCACCCCCACGAGGCCTCGCGGGCAGAAGATGTGTATGGGTGCACGGC
CATGATCGGTGGCTTGCTCTCTCCGGACGATGGCGTTGATCTGACGGTGC
CCTTGATATATCAGAATTATCACAACATCCATCACCTGTACCCGACAATT
CCCTTTTACAAGTACCCTCTTATGTGGCGCAACCACCGGAAGATCTTGCT
TGAGCTGGGAACACCGGTCGGGTCGTGGTTTGGCCCGCTCGTGTCGAGAA
GGGGGGGGAGGGAGCGAGGGGCAGGGAAGGGAAAGAGGGTGGTTGAGGAG
CAAGATCAGCAAAATAATTATCATGTGCATGCACAGTGAGTGGCCATGGC
CACGCATGACGAGCTGACCAACGACCCCATCGCCTGGCCCACCCTCATCC
TCTTCGCAGCCTCCCTCACTACCTACCTCCTCCCTATCCTCCTCTTCCAC
GACAATCCGACGTACTGGACCGTTCCTGTTACAGCGGTGGCGACATATAC
CATGTTTACGGCCATGCACGAAGCGGCCCATCGGGCGATCTCGGCAGAGT
ATCGATGGGTGAATGAGCTGATTGGACACATTTCCTCACTGATTTGTTTC
CAGGCGCCGTTTCAAGCATTTCGATTTATTCACTTGAGCCACCACAAGTA
CACGAATGACCCCAAAAAAGACCCATGACACCACGCATTCTCTCTTCCGA
GGACCTTGAACCCTCCATGACCTCGACCACACGCCAGCGAGAGCCCAGTG
TCAAAAGCCGTCGGCGATCATTGGTCAGCCGGACATGGCCCTGAGTGGGT
TCAACCCTTTTTCTGGTGCACACAAACCCTGCATTATTATTGGCGATACT
TCCGTGACATCTCCTCCCGCCCCTTCGACGAGGCCGCCGAGGCCGTGCTC
GTCACGCTCGTCATCCTCCTGAGCGTGTCCTTCCTCCTTTCCAAAGGGTG
CGGATACCAGCTCTGGATCTTTGTGGGGCTTCCCCGAATGATAACTGACC
CTTGCCTGGCCTACTCGTTTGATTACGCGCCTCACCACCCCCACGAGGCC
TCGCGGGCAGAAGATGTGTATGGGTGCACGGCCATGATCGGTGGCTTGCT
CTCTCCGGACGATGGCGTTGATCTGACGGTGCCCTTGATATATCAGAATT
ATCACAACATCCATCACCTGTACCCGACAATTCCCTTTTACAAGTACCCT
CTTATGTGGCGCAACCACCGGAAGATCTTGCTTGAGCTGGGAACACCGGT
CGGGTCGTGGTTTGGCCCGCTCGTGTCGAGAAGGGGGGGGAGGGAGCGAG
GGGCAGGGAAGGGAAAGAGGGTGGTTGAGGAGCAAGATCAGCAAAATAAT
TATCATGTGCATGCACAGTGAGTGGCCATGGCCACGCATGACGAGCTGAC
CAACGACCCCATCGCCTGGCCCACCCTCATCCTCTTCGCAGCCTCCCTCA
CTACCTACCTCCTCCCTATCCTCCTCTTCCACGACAATCCGACGTACTGG
ACCGTTCCTGTTACAGCGGTGGCGACATATACCATGTTTACGGCCATGCA
CGAAGCGGCCCATCGGGCGATCTCGGCAGAGTATCGATGGGTGAATGAGC
TGATTGGACACATTTCCTCACTGATTTGTTTCCAGGCGCCGTTTCAAGCA
TTTCGATTTATTCACTTGAGCCACCACAAGTACACGAATGACCCCAAAAA
AGACCCATGACACCACGCATTCTCTCTTCCGAGGACCTTGAACCCTCCAT
GACCTCGACCACACGCCAGCGAGAGCCCAGTGTCAAAAGCCGTCGG
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Synonyms
Publications