jgi.p|Nanoce1779_2|584070, mRNA_2984 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584070
Unique NamemRNA_2984
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1543
Alignment locationscaffold_7:404917..406459 +

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Properties
Property NameValue
TranscriptId584156
TrackFilteredModels2
ProteinId584070
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:404917..406459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584070gene_2984Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584070mRNA_2984-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2984CDS_2984Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2984 ID=mRNA_2984|Name=jgi.p|Nanoce1779_2|584070|organism=Nannochloropsis oceanica|type=mRNA|length=1543bp
GTTTTGTTTGACGACGACCCCTTCCTGCAAGCGATACCTGGTAATCTGGT
GATGAACAAATCAACCCACTACAGATAGGAGCGCAGGTAGAGAGAGAGAG
AAGTGAGAGAGGGAGGCAGACAGGGGAGCGGGCCCAAGGATGCAGCGGCC
GTACGTAGTGATGGGCGACAGTCTTGAAGCTGTGGATTCCAGCTCGTGGA
TTGATGTGATTGGTTGCCTTCACTTCGTATCTACCTAATTTTCTCCTTCC
GCCACGCCAGCGCGATATACAAACCGAAGACAAGCATATAAGATGAAGTC
CTGCATTCGAATTGGATGGATAAACGAGACCAAACAGCGATGAGAAAAAA
GCAAGCGCGCTCGAAACGACTGTATGACGTCCAGAAGTCTGATGATGACG
AGACAGGGAAAATGATTATTTTTTAAAACCCCATGGAGGAGCGTTTGGTT
TTTCTTTTAAGGGTCTTGTCTCTTTACATATATTCATCTGCTGCTCGGTC
TTTGACTTGCACTAGAATAGAAGAGAAACTTGAGACATCCCAAACGTGTC
ATCGTCGCTTCTGTGATGGTCCTTTCCCTCACACTTTTTGTGTTCTGTGC
CCTTCGATTGCACAGGCATATGAATGGTGGAGTGTAGCTACCGTCTCTAC
CACACTTCTTTCCTCTGCTTTAGGACTTCTTCCTCTTGTCTCTGTTTCTT
CTCGCTTTTTCGGTCAGAGACGTAGATAACAATCCTCTTCTTTGGTCTCT
TCAGCCCGCTTCCCCAAAAAATGACTATCAATCTTTTCCCTCTACCTCTC
AATACATTCGTGTGATAAAAATCGCTCAATTTTTTTCTCCTCTTCCTTCG
TCTTCTTTCCGAATTACTCTCCGTTTTCCCCCCCTCCCTTCGCCCTTCGA
GCTCGCCCCTGTAGGGGAGATTTGACCTTATGCTGTACGTATTTATAGGG
GTGTGTATGATGAATCAAACCCAGATCTACAGGGTTCGAAGCTTTCTGCG
AATGTCTCCCGTGGTTCGCAGCTGCATTCTTTTCCATTAAGAAAAAAATC
CAATATGGATGGCCCCCAAAACCATTCTCCCCCTGATGTATGTGTAAATA
GATGCCTCATCACCTTCTCCCACGCGTCAGACGTATGTCCTTTCAAAATG
TTAAGCAAGGCCCCTTTGCCTATCTTGTTGGTGTTCCTCACTTTCCTCCT
TGTTCTCGCCTATCCTCGGGTTCTGTCTTTGTCGTTTTCAATTTCGACGC
ACGCTTGCACAAAAAGAGCACGCATGGGCACAATCTGTGACATGACAGTT
GCAACATTTCCCCCGTCCCGGCCTTTGCTGCTCTTTTTTCCCCTCCACCC
AGACTCTAACTCAGGCTCACGTTGGCCTTCATGCTCTCTTTCCCCTCTCT
TTAGGCACACGCAGTCTGTTTTTACTCTTCTTCCTCGCTTCCTTTCTTCT
TCCTTCCCCTCACTGTGCATGCACATGATAATTATTTTGCTGATCTTGCT
CCTCAACCACCCTCTTTCCCTTCCCTGCCCCTCGCTCCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|584070

>mRNA_2984-protein ID=mRNA_2984-protein|Name=jgi.p|Nanoce1779_2|584070|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MEERLVFLLRVLSLYIYSSAARSLTCTRIEEKLETSQTCHRRFCDGPFPH
TFCVLCPSIAQAYEWWSVATVSTTLLSSALGLLPLVSVSSRFFGQRRR*
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mRNA from alignment at scaffold_7:404917..406459+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2984 ID=mRNA_2984|Name=jgi.p|Nanoce1779_2|584070|organism=Nannochloropsis oceanica|type=mRNA|length=1543bp|location=Sequence derived from alignment at scaffold_7:404917..406459+ (Nannochloropsis oceanica)
GTTTTGTTTGACGACGACCCCTTCCTGCAAGCGATACCTGGTAATCTGGT
GATGAACAAATCAACCCACTACAGATAGGAGCGCAGGTAGAGAGAGAGAG
AAGTGAGAGAGGGAGGCAGACAGGGGAGCGGGCCCAAGGATGCAGCGGCC
GTACGTAGTGATGGGCGACAGTCTTGAAGCTGTGGATTCCAGCTCGTGGA
TTGATGTGATTGGTTGCCTTCACTTCGTATCTACCTAATTTTCTCCTTCC
GCCACGCCAGCGCGATATACAAACCGAAGACAAGCATATAAGATGAAGTC
CTGCATTCGAATTGGATGGATAAACGAGACCAAACAGCGATGAGAAAAAA
GCAAGCGCGCTCGAAACGACTGTATGACGTCCAGAAGTCTGATGATGACG
AGACAGGGAAAATGATTATTTTTTAAAACCCCATGGAGGAGCGTTTGGTT
TTTCTTTTAAGGGTCTTGTCTCTTTACATATATTCATCTGCTGCTCGGTC
TTTGACTTGCACTAGAATAGAAGAGAAACTTGAGACATCCCAAACGTGTC
ATCGTCGCTTCTGTGATGGTCCTTTCCCTCACACTTTTTGTGTTCTGTGC
CCTTCGATTGCACAGGCATATGAATGGTGGAGTGTAGCTACCGTCTCTAC
CACACTTCTTTCCTCTGCTTTAGGACTTCTTCCTCTTGTCTCTGTTTCTT
CTCGCTTTTTCGGTCAGAGACGTAGATAACAATCCTCTTCTTTGGTCTCT
TCAGCCCGCTTCCCCAAAAAATGACTATCAATCTTTTCCCTCTACCTCTC
AATACATTCGTGTGATAAAAATCGCTCAATTTTTTTCTCCTCTTCCTTCG
TCTTCTTTCCGAATTACTCTCCGTTTTCCCCCCCTCCCTTCGCCCTTCGA
GCTCGCCCCTGTAGGGGAGATTTGACCTTATGCTGTACGTATTTATAGGG
GTGTGTATGATGAATCAAACCCAGATCTACAGGGTTCGAAGCTTTCTGCG
AATGTCTCCCGTGGTTCGCAGCTGCATTCTTTTCCATTAAGAAAAAAATC
CAATATGGATGGCCCCCAAAACCATTCTCCCCCTGATGTATGTGTAAATA
GATGCCTCATCACCTTCTCCCACGCGTCAGACGTATGTCCTTTCAAAATG
TTAAGCAAGGCCCCTTTGCCTATCTTGTTGGTGTTCCTCACTTTCCTCCT
TGTTCTCGCCTATCCTCGGGTTCTGTCTTTGTCGTTTTCAATTTCGACGC
ACGCTTGCACAAAAAGAGCACGCATGGGCACAATCTGTGACATGACAGTT
GCAACATTTCCCCCGTCCCGGCCTTTGCTGCTCTTTTTTCCCCTCCACCC
AGACTCTAACTCAGGCTCACGTTGGCCTTCATGCTCTCTTTCCCCTCTCT
TTAGGCACACGCAGTCTGTTTTTACTCTTCTTCCTCGCTTCCTTTCTTCT
TCCTTCCCCTCACTGTGCATGCACATGATAATTATTTTGCTGATCTTGCT
CCTCAACCACCCTCTTTCCCTTCCCTGCCCCTCGCTCCCTCCC
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Coding sequence (CDS) from alignment at scaffold_7:404917..406459+

>mRNA_2984 ID=mRNA_2984|Name=jgi.p|Nanoce1779_2|584070|organism=Nannochloropsis oceanica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_7:404917..406459+ (Nannochloropsis oceanica)
ATGGAGGAGCGTTTGGTTTTTCTTTTAAGGGTCTTGTCTCTTTACATATA
TTCATCTGCTGCTCGGTCTTTGACTTGCACTAGAATAGAAGAGAAACTTG
AGACATCCCAAACGTGTCATCGTCGCTTCTGTGATGGTCCTTTCCCTCAC
ACTTTTTGTGTTCTGTGCCCTTCGATTGCACAGGCATATGAATGGTGGAG
TGTAGCTACCGTCTCTACCACACTTCTTTCCTCTGCTTTAGGACTTCTTC
CTCTTGTCTCTGTTTCTTCTCGCTTTTTCGGTCAGAGACGTAGATAA
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Synonyms
Publications