Properties
| Property Name | Value |
|---|
| TranscriptId | 584154 |
| Track | FilteredModels2 |
| ProteinId | 584068 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:402875..404889 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2983 ID=mRNA_2983|Name=jgi.p|Nanoce1779_2|584068|organism=Nannochloropsis oceanica|type=mRNA|length=1337bp
CAGGCGACATAATCAAGCCGAAGCCGTTGCCGGAGTCGCTGGACACAAAC
GAGCGACGCTTCTACAAGCGCAAGGTCATACACCACGATAAATATGGGGG
ACAGCGGCGGCAGAAAGAAGGAGATCTATTCCTATCAGACCGATTGGCTT
ATCTTTGCCATGGCCTGGAACCAACGCGCAAATATGTCCGACCGCTTCCG
CATTGCTCTCGGCTCCTGCATCGAAGAATACAACAACAAAATACGAATCA
TTGAACGCAGCCCCTCCTCCATTTCCTCCTCCTCCTCCGTCGACTCCACC
CCTGCCAACGCCAACGACGACGGTTTTCATAAAGTAACGGAATTCGATCA
TCCTTACCCTGCGACTAAGGTGATGTGGTGTCCCGACCGAGAGCCTGTCA
GCCCTCAACGGGACCTGCTGGCCACAACGGGCGATTACTTAAGGATATGG
AATTGCAGTGGATCGGAACCCAAGCTGGAGGCGTTGCTGAACAATAATAA
GAACAGCGAGTACTGCGCCCCCCTCACCTCCTTCGACTGGAACAAGGACG
ACCCTTCCTTACTCGGGACGGCGTGCATTGACACCACCTGCACGATTTGG
GACGTGAACACGCAGCAGGCCAAGACCCAGATTATTGCTCACGATAAGGA
GGTCTATGATATTGCCTTCGCCCGTGGCAAGGATCTGTTCGCTTCCGTCG
GCGCAGACGGCTCCGTGCGTATGTTCGACCTCCGCTCCCTCGTCCACTCC
ACCATCATCTACGAATCACCCGAGCTGACTCCCCTCCTCCGCCTGGCATG
GAACAAACAAGACCCGAATTACCTCGCGGCCATCATGGCGGACAGCGCTA
AAACTTTTCTGCTTGACATCCGGAAGCCCTCCTCGACCGTCGCCGAGCTC
GGAGAGCATCAAGGCCCTGTTAATTCCCTCGCCTGGGCACCGCATTCTGC
TTGCCATATCTGCACGTGCGGCGAAGACAGACAAGCATTGATCTGGGACC
TCACTGCGCTGCCGGGGCCGGTAGACAGTCCGATTCTGGCATACGCGGCG
CAGGCGGAGGTAAACACTGTGGAGTGGTTTCAGCAGAGCGCTGAGAGGAA
TTGGGTGGCGATTGGATTTGACAACCAGTTGCAGGTTTTGCGGGTGTAAG
GCGGGAGGGATGGAAAAAGGGAGGGAGGAAGAGATGGGCTGTATAATGGA
TGAGATGGAGGGATGGAGAGGTGTAACAGTATGGATGTCGGGGCCTTGTC
TTTCTTTTGTGTCTGTGGAAGGGGAAAAGGAATGTAGGACGGAGTGGGAG
GCAGCGAATGAAAGAGACGCGATCCTTGTCTTAGGGG back to topprotein sequence of jgi.p|Nanoce1779_2|584068 >mRNA_2983-protein ID=mRNA_2983-protein|Name=jgi.p|Nanoce1779_2|584068|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MGDSGGRKKEIYSYQTDWLIFAMAWNQRANMSDRFRIALGSCIEEYNNKI
RIIERSPSSISSSSSVDSTPANANDDGFHKVTEFDHPYPATKVMWCPDRE
PVSPQRDLLATTGDYLRIWNCSGSEPKLEALLNNNKNSEYCAPLTSFDWN
KDDPSLLGTACIDTTCTIWDVNTQQAKTQIIAHDKEVYDIAFARGKDLFA
SVGADGSVRMFDLRSLVHSTIIYESPELTPLLRLAWNKQDPNYLAAIMAD
SAKTFLLDIRKPSSTVAELGEHQGPVNSLAWAPHSACHICTCGEDRQALI
WDLTALPGPVDSPILAYAAQAEVNTVEWFQQSAERNWVAIGFDNQLQVLR
V* back to topmRNA from alignment at scaffold_7:402875..404889+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2983 ID=mRNA_2983|Name=jgi.p|Nanoce1779_2|584068|organism=Nannochloropsis oceanica|type=mRNA|length=2015bp|location=Sequence derived from alignment at scaffold_7:402875..404889+ (Nannochloropsis oceanica)
CAGGCGACATAATCAAGCCGAAGCCGTTGCCGGAGTCGCTGGACACAAAC
GAGCGACGCTTCTACAAGCGCAAGGTCATACACCACGATAAATATGGGGG
ACAGCGGCGGCAGAAAGAAGGAGGTGAGTCCTGGGAGGGTGTATTGCGGG
CGGAAGTCAAGTATTAGGATGGTAAGGGGAGGAAGTGCTTGTCTACGTGT
CATTTCATACGCGGCCTCTGAGCATGGTGGGATAGAATGTGGAGTGCAGC
TCGTGGTGGTATGTGGATGTCTTGGGCTCGTGCATGTGTATTAAATGCAT
GCTTGCAGTGCCTTGCTTGTAATAGAGTGAGAGTGCGTGATCTGGATGGG
GATAGGTGTGCTTGCACGGCTCTTTGCTCCTAGTCTTGGGGCGACAGGTC
ACAATTGACGTGAGGGAAGGCCTTATTGGCTGTGTGTTGGGCGTAACCGC
CATTTGTCTGTTCCTCTTTGTGCTCTTTCGATGTGTTCAAGTCCCGCTAT
TCGGAATCTACCACATTCCCTTATCTCTCTGTCTCTTTCACCTCCTTCCC
TCCTTTCCCTCCCTCCTTCCCCCACAGATCTATTCCTATCAGACCGATTG
GCTTATCTTTGCCATGGCCTGGAACCAACGCGCAAATATGTCCGACCGCT
TCCGCATTGCTCTCGGCTCCTGCATCGAAGAATACAACAACAAAATACGA
ATCATTGAACGCAGCCCCTCCTCCATTTCCTCCTCCTCCTCCGTCGACTC
CACCCCTGCCAACGCCAACGACGACGGTTTTCATAAAGTAACGGAATTCG
ATCATCCTTACCCTGCGACTAAGGTGATGTGGTGTCCCGACCGAGAGCCT
GTCAGCCCTCAACGGGACCTGCTGGCCACAACGGGCGATTACTTAAGGAT
ATGGAATTGCAGTGGATCGGAACCCAAGCTGGAGGCGTTGCTGAACAATG
TGAGTGTCCGAGAAGTGGGTTAGGGAGGAAAGGCGAGGATGCAGTCAAGT
TTTGTCTGCTTATTCTATGTCGGCGAACAAGTTTTATGACATTTCCATTC
CTTTCTCGCATCTCTTAGAATAAGAACAGCGAGTACTGCGCCCCCCTCAC
CTCCTTCGACTGGAACAAGGACGACCCTTCCTTACTCGGGACGGCGTGCA
TTGACACCACCTGCACGATTTGGGACGTGAACACGCAGCAGGCCAAGACC
CAGATTATTGCTCACGATAAGGAGGTCTATGATATTGGTGAGGAAAGAGG
GGAAGGAGGGAGGGAAAGAGGGCCGAGGCGGCTTCAATGGTGTAGCAGTA
CCACCTTTAACTCCAACCCCTCCCCTTTTTCCTTCCCTCCAGCCTTCGCC
CGTGGCAAGGATCTGTTCGCTTCCGTCGGCGCAGACGGCTCCGTGCGTAT
GTTCGACCTCCGCTCCCTCGTCCACTCCACCATCATCTACGAATCACCCG
AGCTGACTCCCCTCCTCCGCCTGGCATGGAACAAACAAGACCCGAATTAC
CTCGCGGCCATCATGGCGGACAGCGCTAAAACTTTTCTGCTTGACATCCG
GAAGCCCTCCTCGACCGTCGCCGAGCTCGGAGAGCATCAAGGCCCTGTTA
ATTCCCTCGCCTGGGCACCGCATTCTGCTTGCCATATCTGCACGTGCGGC
GAAGACAGACAAGCATTGATCTGGGACCTCACTGCGCTGCCGGGGCCGGT
AGACAGTCCGATTCTGGCATACGCGGCGCAGGCGGAGGTAAACACTGTGG
AGTGGTTTCAGCAGAGCGCTGAGAGGAATTGGGTGGCGATTGGATTTGAC
AACCAGTTGCAGGTTTTGCGGGTGTAAGGCGGGAGGGATGGAAAAAGGGA
GGGAGGAAGAGATGGGCTGTATAATGGATGAGATGGAGGGATGGAGAGGT
GTAACAGTATGGATGTCGGGGCCTTGTCTTTCTTTTGTGTCTGTGGAAGG
GGAAAAGGAATGTAGGACGGAGTGGGAGGCAGCGAATGAAAGAGACGCGA
TCCTTGTCTTAGGGG back to topCoding sequence (CDS) from alignment at scaffold_7:402875..404889+ >mRNA_2983 ID=mRNA_2983|Name=jgi.p|Nanoce1779_2|584068|organism=Nannochloropsis oceanica|type=CDS|length=4224bp|location=Sequence derived from alignment at scaffold_7:402875..404889+ (Nannochloropsis oceanica)
ATGGGGGACAGCGGCGGCAGAAAGAAGGAGATCTATTCCTATCAGACCGA
TTGGCTTATCTTTGCCATGGCCTGGAACCAACGCGCAAATATGTCCGACC
GCTTCCGCATTGCTCTCGGCTCCTGCATCGAAGAATACAACAACAAAATA
CGAATCATTGAACGCAGCCCCTCCTCCATTTCCTCCTCCTCCTCCGTCGA
CTCCACCCCTGCCAACGCCAACGACGACGGTTTTCATAAAGTAACGGAAT
TCGATCATCCTTACCCTGCGACTAAGGTGATGTGGTGTCCCGACCGAGAG
CCTGTCAGCCCTCAACGGGACCTGCTGGCCACAACGGGCGATTACTTAAG
GATATGGAATTGCAGTGGATCGGAACCCAAGCTGGAGGCGTTGCTGAACA
ATAATAAGAACAGCGAGTACTGCGCCCCCCTCACCTCCTTCGACTGGAAC
AAGGACGACCCTTCCTTACTCGGGACGGCGTGCATTGACACCACCTGCAC
GATTTGGGACGTGAACACGCAGCAGGCCAAGACCCAGATTATTGCTCACG
ATAAGGAGGTCTATGATATTGCCTTCGCCCGTGGCAAGGATCTGTTCGCT
TCCGTCGGCGCAGACGGCTCCGTGCGTATGTTCGACCTCCGCTCCCTCGT
CCACTCCACCATCATCTACGAATCACCCGAGCTGACTCCCCTCCTCCGCC
TGGCATGGAACAAACAAGACCCGAATTACCTCGCGGCCATCATGGCGGAC
AGCGCTAAAACTTTTCTGCTTGACATCCGGAAGCCCTCCTCGACCGTCGC
CGAGCTCGGAGAGCATCAAGGCCCTGTTAATTCCCTCGCCTGGGCACCGC
ATTCTGCTTGCCATATCTGCACGTGCGGCGAAGACAGACAAGCATTGATC
TGGGACCTCACTGCGCTGCCGGGGCCGGTAGACAGTCCGATTCTGGCATA
CGCGGCGCAGGCGGAGGTAAACACTGTGGAGTGGTTTCAGCAGAGCGCTG
AGAGGAATTGGGTGGCGATTGGATTTGACAACCAGTTGCAGGTTTTGCGG
GTGTAAATGGGGGACAGCGGCGGCAGAAAGAAGGAGATCTATTCCTATCA
GACCGATTGGCTTATCTTTGCCATGGCCTGGAACCAACGCGCAAATATGT
CCGACCGCTTCCGCATTGCTCTCGGCTCCTGCATCGAAGAATACAACAAC
AAAATACGAATCATTGAACGCAGCCCCTCCTCCATTTCCTCCTCCTCCTC
CGTCGACTCCACCCCTGCCAACGCCAACGACGACGGTTTTCATAAAGTAA
CGGAATTCGATCATCCTTACCCTGCGACTAAGGTGATGTGGTGTCCCGAC
CGAGAGCCTGTCAGCCCTCAACGGGACCTGCTGGCCACAACGGGCGATTA
CTTAAGGATATGGAATTGCAGTGGATCGGAACCCAAGCTGGAGGCGTTGC
TGAACAATAATAAGAACAGCGAGTACTGCGCCCCCCTCACCTCCTTCGAC
TGGAACAAGGACGACCCTTCCTTACTCGGGACGGCGTGCATTGACACCAC
CTGCACGATTTGGGACGTGAACACGCAGCAGGCCAAGACCCAGATTATTG
CTCACGATAAGGAGGTCTATGATATTGCCTTCGCCCGTGGCAAGGATCTG
TTCGCTTCCGTCGGCGCAGACGGCTCCGTGCGTATGTTCGACCTCCGCTC
CCTCGTCCACTCCACCATCATCTACGAATCACCCGAGCTGACTCCCCTCC
TCCGCCTGGCATGGAACAAACAAGACCCGAATTACCTCGCGGCCATCATG
GCGGACAGCGCTAAAACTTTTCTGCTTGACATCCGGAAGCCCTCCTCGAC
CGTCGCCGAGCTCGGAGAGCATCAAGGCCCTGTTAATTCCCTCGCCTGGG
CACCGCATTCTGCTTGCCATATCTGCACGTGCGGCGAAGACAGACAAGCA
TTGATCTGGGACCTCACTGCGCTGCCGGGGCCGGTAGACAGTCCGATTCT
GGCATACGCGGCGCAGGCGGAGGTAAACACTGTGGAGTGGTTTCAGCAGA
GCGCTGAGAGGAATTGGGTGGCGATTGGATTTGACAACCAGTTGCAGGTT
TTGCGGGTGTAAATGGGGGACAGCGGCGGCAGAAAGAAGGAGATCTATTC
CTATCAGACCGATTGGCTTATCTTTGCCATGGCCTGGAACCAACGCGCAA
ATATGTCCGACCGCTTCCGCATTGCTCTCGGCTCCTGCATCGAAGAATAC
AACAACAAAATACGAATCATTGAACGCAGCCCCTCCTCCATTTCCTCCTC
CTCCTCCGTCGACTCCACCCCTGCCAACGCCAACGACGACGGTTTTCATA
AAGTAACGGAATTCGATCATCCTTACCCTGCGACTAAGGTGATGTGGTGT
CCCGACCGAGAGCCTGTCAGCCCTCAACGGGACCTGCTGGCCACAACGGG
CGATTACTTAAGGATATGGAATTGCAGTGGATCGGAACCCAAGCTGGAGG
CGTTGCTGAACAATAATAAGAACAGCGAGTACTGCGCCCCCCTCACCTCC
TTCGACTGGAACAAGGACGACCCTTCCTTACTCGGGACGGCGTGCATTGA
CACCACCTGCACGATTTGGGACGTGAACACGCAGCAGGCCAAGACCCAGA
TTATTGCTCACGATAAGGAGGTCTATGATATTGCCTTCGCCCGTGGCAAG
GATCTGTTCGCTTCCGTCGGCGCAGACGGCTCCGTGCGTATGTTCGACCT
CCGCTCCCTCGTCCACTCCACCATCATCTACGAATCACCCGAGCTGACTC
CCCTCCTCCGCCTGGCATGGAACAAACAAGACCCGAATTACCTCGCGGCC
ATCATGGCGGACAGCGCTAAAACTTTTCTGCTTGACATCCGGAAGCCCTC
CTCGACCGTCGCCGAGCTCGGAGAGCATCAAGGCCCTGTTAATTCCCTCG
CCTGGGCACCGCATTCTGCTTGCCATATCTGCACGTGCGGCGAAGACAGA
CAAGCATTGATCTGGGACCTCACTGCGCTGCCGGGGCCGGTAGACAGTCC
GATTCTGGCATACGCGGCGCAGGCGGAGGTAAACACTGTGGAGTGGTTTC
AGCAGAGCGCTGAGAGGAATTGGGTGGCGATTGGATTTGACAACCAGTTG
CAGGTTTTGCGGGTGTAAATGGGGGACAGCGGCGGCAGAAAGAAGGAGAT
CTATTCCTATCAGACCGATTGGCTTATCTTTGCCATGGCCTGGAACCAAC
GCGCAAATATGTCCGACCGCTTCCGCATTGCTCTCGGCTCCTGCATCGAA
GAATACAACAACAAAATACGAATCATTGAACGCAGCCCCTCCTCCATTTC
CTCCTCCTCCTCCGTCGACTCCACCCCTGCCAACGCCAACGACGACGGTT
TTCATAAAGTAACGGAATTCGATCATCCTTACCCTGCGACTAAGGTGATG
TGGTGTCCCGACCGAGAGCCTGTCAGCCCTCAACGGGACCTGCTGGCCAC
AACGGGCGATTACTTAAGGATATGGAATTGCAGTGGATCGGAACCCAAGC
TGGAGGCGTTGCTGAACAATAATAAGAACAGCGAGTACTGCGCCCCCCTC
ACCTCCTTCGACTGGAACAAGGACGACCCTTCCTTACTCGGGACGGCGTG
CATTGACACCACCTGCACGATTTGGGACGTGAACACGCAGCAGGCCAAGA
CCCAGATTATTGCTCACGATAAGGAGGTCTATGATATTGCCTTCGCCCGT
GGCAAGGATCTGTTCGCTTCCGTCGGCGCAGACGGCTCCGTGCGTATGTT
CGACCTCCGCTCCCTCGTCCACTCCACCATCATCTACGAATCACCCGAGC
TGACTCCCCTCCTCCGCCTGGCATGGAACAAACAAGACCCGAATTACCTC
GCGGCCATCATGGCGGACAGCGCTAAAACTTTTCTGCTTGACATCCGGAA
GCCCTCCTCGACCGTCGCCGAGCTCGGAGAGCATCAAGGCCCTGTTAATT
CCCTCGCCTGGGCACCGCATTCTGCTTGCCATATCTGCACGTGCGGCGAA
GACAGACAAGCATTGATCTGGGACCTCACTGCGCTGCCGGGGCCGGTAGA
CAGTCCGATTCTGGCATACGCGGCGCAGGCGGAGGTAAACACTGTGGAGT
GGTTTCAGCAGAGCGCTGAGAGGAATTGGGTGGCGATTGGATTTGACAAC
CAGTTGCAGGTTTTGCGGGTGTAA back to top
|