jgi.p|Nanoce1779_2|584063, mRNA_2982 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584063
Unique Name	mRNA_2982
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2696
Alignment location	scaffold_7:399600..402622 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584149
Track	FilteredModels2
ProteinId	584063

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:399600..402622 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584063	gene_2982	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584063	mRNA_2982-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2982	CDS_2982	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:399600..402622-
coding sequence from alignment at scaffold_7:399600..402622-

mRNA sequence

>mRNA_2982 ID=mRNA_2982|Name=jgi.p|Nanoce1779_2|584063|organism=Nannochloropsis oceanica|type=mRNA|length=2696bp
AACCACAGGCGTAGAGGATGCCATATTGTCCATCTCCGCAGCCCTCTAAC
ACGCTTTGCCTCTTGGGCGTGGGTGCGGGTCAACAACAGCCTTTAGAGAC
CTGTCTCCGCTCCCTCTTTCCAACCGCAACGGCCGTCGACGTGAAAACTA
CCAAGAGCTTTGTCTGCTTTGCGACTCAGCAGACTGCTGAAGATGTCCTG
AAACAATGGCAGAAACAGATACTTCCACTTGGGCTTTCGCAGCACCCAGT
TAAAATCACGTTCGGACGATTTTACGAGGCTAAGTCTAATCCACAGCCGG
AAGACGTGCAAGCGGACCCTATCACAGGTGCCCCTTTCCCCGATGCCCAC
CTCCCACCCGGCCTGCAAATACTCCCATTTTTATCCGAAGCAGAGGAGGC
GGCACTCCTAGCTCTAGTAGATAGCGCGGAATGGGATACCGTCCAAGTCT
TTCGAAGGACGCAGCACTATGGTGCAGCGGCCATTGATTTCAAAACCCGG
AAACTTGGGCTGTCTGCGCCCGTCGCTCCCATTCCTTCTATATGCCAAGC
CTTACTTAATCGTATTCGAAAGCAACAGGAGGCATTGGGTGTGTCCTGGT
CGAGTGGACCGTTGGCAAAGGAGGAGTTTCCTTGTGCGGAGAGAGATCAG
ATGACAGTGAATGAATATGAGCCGGGATCGGGCATAGCTAATCATATCGA
TGTGCACTCGCTATTCGAGGACGGCTTTTTGATTGTATCTTTGGGGAGTG
CTTGTGTTATGGATTTTAGGAAGCAAAGAAGGAGACAGGCCGGTGATGGA
CTGGAAGAGGGAGAAGTGGATGCACGCTGCTCTCTACTGCTGCCACGAAG
GTCTTTGCTTGTGCTGCAGGGAGAGGCCCGGTACGCATGGAGTCATGGAT
TGGCGAGTCGGAAAACAGACAAGGTAAATGGTCAGCTCGTCGCGCGGGGC
CGCCGCGTCTCACTTAGTTTTCGGAGGATGCGTAAGGGAAGCCCGCTAGT
GTGTGATTGTTCTTTCCCCGAGGCCTGCGATAGTCGGGCGGCCACTGCTG
GGGCCTGTGGCAGCTATACCAATTGAGAGAGGGGACTTGGATCGCACGCG
TGAGATAGTGTACAGAGAAATATATTCACGGAATGGCTGAATTGAGACGA
GGACGACGAGTGACAGAAGCAAAGACGACAGTATCCAGTAATCCGATTAC
TTTCATTTCTTTTTCTGTTTGACGCCATGAATATGGAGCATTTGCTGATC
TATTATCCAATAGCGTGTGAAGGCCTTCAGTAGCACACTCTGGTCCGTTC
CTCTCTCGATTCACTCCGTTCCTTCAGTTTTACACGCACGTACATAGAAT
AAATATATGGTCACACCTAGCACTCATCTAGGTAATGGGACGGGCTTTTG
GGGCGACGAGGGGGAGCGCAAGCGTTGTCTACCTGCCATTTGAACCATTT
TCCTGCATTCACGGCCCAGTCAGCAAAGGAAAAGAAAGAAAGAGCTAATG
CGGCACCAGCAGCAGCGACACGCGCCTTCGTTTCAGCTTCTTCCTGCTGC
TGTTTCTTTTTCTGCCGCTGCTGGTGCTGATGCTGGTGCTGATGCTGAAG
CTTTCTCATGTGTTGGGCCTTGACGTACCAAATAAAGATGGCTCGCTGCT
TCACCCATCGATCCCACTTAAGGACCCCTGCCCGCAGCCGCTCCATCTTG
GCCGCTTGAATCAAACGTACTACTTTATCCTCTTCTTCCCGGTGGGAAGC
CTTGGCCTGCTGCACAGACGCTTGCCGCTGATGACGCGCTTCACGGGCGG
AGAGAGTCGTGGCGTAAAACATGTCGATCTGGGATTTGGCTGCCTGAAAC
CGCTCTTGGTCCCGTTTGCTGGCGAGAGAGTCTTTTCGCCTGGCCGACAG
CGTCCTTTGTCCGTAGTAATTATTGCGGGCAATGAAGCATTCAGACTTGT
CCTCGTACCCGTGCTCTCCTGCCAACACTCGTTCCCGACGCGCTGCCTCG
GTCACCTCTTTCTGTGCGTGTATCCGCAAGGCTGCATTCCGGGTCCCTTC
ATCTCGAGCAGTCTCCGCCGCCTGCCGAGCCAAGTCACGAGCTTTTTGTC
GTTGCAACAAAATGTGCTTACGCTCTTCCCGTTGCTTGACTTTAGCTTGG
TGGCGAATGCGGGCACACAAATCCCGTGCCTTGTTTATTACGTTATCGGT
TTGAGGCTGATACTTGGATTGCGAGTCGTCTCTTCGCTCCTCGACTAGCT
CCTTGACGACGTTCACGGCAGCTTTCCCGCTGGAGGCCTCACCCCACTGA
GCCATTAAGGATGAGCGGGACAGCGTCAGGTGCTGAGGATTCATTCCATC
GGAGTCTTCGCTGTCGCTGCTAGTGCCACCGCTGGTGCCGCTGTTGCTGC
AGGTAGTGGAGCCGGCAGTGGGTTGCTGCGCATGGGCCTGTCGGAGTGAG
ACAAGCATGAGGAGCTTCAATAACATACAAAGCAGTGATGAACCTGATGT
CCTTACCTTCTTCTGTATCCGATGCCAGCGCTTTATTTCCTCGGTGCCGT
CATGCCGGCATTCAGGCTGGTCCTCCCCCTCGGAGCGCTGATTAGGCGTC
TCTGAGTCCGAGACAAGAAGATGGGGAGTCTTGGTGGCGGTCATGAGCGG
AATTGAGGTCACAAATGTGGCTGGTGGACGTCGATGGTGCATCGCT

protein sequence of jgi.p|Nanoce1779_2|584063

>mRNA_2982-protein ID=mRNA_2982-protein|Name=jgi.p|Nanoce1779_2|584063|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MPYCPSPQPSNTLCLLGVGAGQQQPLETCLRSLFPTATAVDVKTTKSFVC
FATQQTAEDVLKQWQKQILPLGLSQHPVKITFGRFYEAKSNPQPEDVQAD
PITGAPFPDAHLPPGLQILPFLSEAEEAALLALVDSAEWDTVQVFRRTQH
YGAAAIDFKTRKLGLSAPVAPIPSICQALLNRIRKQQEALGVSWSSGPLA
KEEFPCAERDQMTVNEYEPGSGIANHIDVHSLFEDGFLIVSLGSACVMDF
RKQRRRQAGDGLEEGEVDARCSLLLPRRSLLVLQGEARYAWSHGLASRKT
DKVNGQLVARGRRVSLSFRRMRKGSPLVCDCSFPEACDSRAATAGACGSY
TN*

mRNA from alignment at scaffold_7:399600..402622-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2982 ID=mRNA_2982|Name=jgi.p|Nanoce1779_2|584063|organism=Nannochloropsis oceanica|type=mRNA|length=3023bp|location=Sequence derived from alignment at scaffold_7:399600..402622- (Nannochloropsis oceanica)
AACCACAGGCGTAGAGGATGCCATATTGTCCATCTCCGCAGCCCTCTAAC
ACGCTTTGCCTCTTGGGCGTGGGTGCGGGTCAACAACAGCCTTTAGAGAC
CTGTCTCCGCTCCCTCTTTCCAACCGCAACGGCCGTCGACGTGAAAACTA
CCAAGAGCTTTGTCTGCTTTGCGACTCAGCAGACTGCTGAAGATGTCCTG
AAACAATGGCAGAAACAGATACTTCCACTTGGGCTTTCGCAGCACCCAGT
TAAAATCACGTTCGGACGATTTTACGAGGCTAAGTCTAATCCACAGCCGG
AAGACGTGCAAGCGGACCCTATCACAGGTGCCCCTTTCCCCGATGCCCAC
CTCCCACCCGGCCTGCAAATACTCCCATTTTTATCCGAAGCAGAGGAGGC
GGCACTCCTAGCTCTAGTAGATAGCGCGGAATGGGATACCGTCCAAGTCT
TTCGAAGGACGCAGCACTATGGTGCAGCGGCCATTGATTTCAAAACCCGG
AAACTTGGGCTGTCTGCGCCCGTCGCTCCCATTCCTTCTATATGCCAAGC
CTTACTTAATCGTATTCGAAAGCAACAGGAGGCATTGGGTGTGTCCTGGT
CGAGTGGACCGTTGGCAAAGGAGGAGTTTCCTTGTGCGGAGAGAGATCAG
ATGACAGTGAATGAATATGAGCCGGGATCGGGCATAGCTAATCATATCGA
TGTGCACTCGCTATTCGAGGACGGCTTTTTGATTGTATCTTTGGGGAGTG
CTTGTGTTATGGATTTTAGGAAGCAAAGAAGGAGACAGGCCGGTGATGGA
CTGGAAGAGGGAGAAGTGGATGCACGCTGCTCTCTACTGCTGCCACGAAG
GTCTTTGCTTGTGCTGCAGGGAGAGGCCCGGTACGCATGGAGTCATGGAT
TGGCGAGTCGGAAAACAGACAAGGTAAATGGTCAGCTCGTCGCGCGGGGC
CGCCGCGTCTCACTTAGTTTTCGGAGGATGCGTAAGGGAAGCCCGCTAGT
GTGTGATTGTTCTTTCCCCGAGGCCTGCGATAGTCGGGCGGCCACTGCTG
GGGCCTGTGGCAGCTATACCAATTGAGAGAGGGGACTTGGATCGCACGCG
TGAGATAGTGTACAGAGAAATATATTCACGGAATGGCTGAATTGAGACGA
GGACGACGAGTGACAGAAGCAAAGACGACAGTATCCAGTAATCCGATTAC
TTTCATTTCTTTTTCTGTTTGACGCCATGAATATGGAGCATTTGCTGATC
TATTATCCAATAGCGTGTGAAGGCCTTCAGTAGCACACTCTGGTCCGTTC
CTCTCTCGATTCACTCCGTTCCTTCAGTTTTACACGCACGTACATAGAAT
AAATATATGGTCACACCTAGCACTCATCTAGGTAATGGGACGGGCTTTTG
GGGCGACGAGGGGGAGCGCAAGCGTTGTCTACCTGCCATTTGAACCATTT
TCCTGCATTCACGGCCCAGTCAGCAAAGGAAAAGAAAGAAAGAGCTAATG
CGGCACCAGCAGCAGCGACACGCGCCTTCGTTTCAGCTTCTTCCTGCTGC
TGTTTCTTTTTCTGCCGCTGCTGGTGCTGATGCTGGTGCTGATGCTGAAG
CTTTCTCATGTGTTGGGCCTTGACGTACCAAATAAAGATGGCTCGCTGCT
TCACCCATCGATCCCACTGTTTTTGTGTATTTGTGTGTGAAATAGGGCGT
AAGAATATTCTTTACTGGATGGGTATCGCGCGTGTTCACTCGACTACCTC
GTGTACGACCAGCTCTGGTCGGTGTCATTCAATGTTGAAGTTGAGAAGAG
TTGCCCTTCTCTCCTCTATTTGTTCTTTCCCCACTATATTGCCCGTAAGA
AGCATACCTTAAGGACCCCTGCCCGCAGCCGCTCCATCTTGGCCGCTTGA
ATCAAACGTACTACTTTATCCTCTTCTTCCCGGTGGGAAGCCTTGGCCTG
CTGCACAGACGCTTGCCGCTGATGACGCGCTTCACGGGCGGAGAGAGTCG
TGGCGTAAAACATGTCGATCTGGGATTTGGCTGCCTGAAACCGCTCTTGG
TCCCGTTTGCTGGCGAGAGAGTCTTTTCGCCTGGCCGACAGCGTCCTTTG
TCCGTAGTAATTATTGCGGGCAATGAAGCATTCAGACTTGTCCTCGTACC
CGTGCTCTCCTGCCAACACTCGTTCCCGACGCGCTGCCTCGGTCACCTCT
TTCTGTGCGTGTATCCGCAAGGCTGCATTCCGGGTCCCTTCATCTCGAGC
AGTCTCCGCCGCCTGCCGAGCCAAGTCACGAGCTTTTTGTCTGATCCGTA
CGTAGGTTTGTGAATGACGGGGAACAAGGAAATGGTAGAAATAAGAGGGA
AGGTCGTTCAGAGTGCCAATATTGGAAGGTGGAGAATAAACAAGGAAAGG
AGCCTGGGCAGTCCATACCGACGTACCGTTGCAACAAAATGTGCTTACGC
TCTTCCCGTTGCTTGACTTTAGCTTGGTGGCGAATGCGGGCACACAAATC
CCGTGCCTTGTTTATTACGTTATCGGTTTGAGGCTGATACTTGGATTGCG
AGTCGTCTCTTCGCTCCTCGACTAGCTCCTTGACGACGTTCACGGCAGCT
TTCCCGCTGGAGGCCTCACCCCACTGAGCCATTAAGGATGAGCGGGACAG
CGTCAGGTGCTGAGGATTCATTCCATCGGAGTCTTCGCTGTCGCTGCTAG
TGCCACCGCTGGTGCCGCTGTTGCTGCAGGTAGTGGAGCCGGCAGTGGGT
TGCTGCGCATGGGCCTGTCGGAGTGAGACAAGCATGAGGAGCTTCAATAA
CATACAAAGCAGTGATGAACCTGATGTCCTTACCTTCTTCTGTATCCGAT
GCCAGCGCTTTATTTCCTCGGTGCCGTCATGCCGGCATTCAGGCTGGTCC
TCCCCCTCGGAGCGCTGATTAGGCGTCTCTGAGTCCGAGACAAGAAGATG
GGGAGTCTTGGTGGCGGTCATGAGCGGAATTGAGGTCACAAATGTGGCTG
GTGGACGTCGATGGTGCATCGCT

Coding sequence (CDS) from alignment at scaffold_7:399600..402622-

>mRNA_2982 ID=mRNA_2982|Name=jgi.p|Nanoce1779_2|584063|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at scaffold_7:399600..402622- (Nannochloropsis oceanica)
ATGCCATATTGTCCATCTCCGCAGCCCTCTAACACGCTTTGCCTCTTGGG
CGTGGGTGCGGGTCAACAACAGCCTTTAGAGACCTGTCTCCGCTCCCTCT
TTCCAACCGCAACGGCCGTCGACGTGAAAACTACCAAGAGCTTTGTCTGC
TTTGCGACTCAGCAGACTGCTGAAGATGTCCTGAAACAATGGCAGAAACA
GATACTTCCACTTGGGCTTTCGCAGCACCCAGTTAAAATCACGTTCGGAC
GATTTTACGAGGCTAAGTCTAATCCACAGCCGGAAGACGTGCAAGCGGAC
CCTATCACAGGTGCCCCTTTCCCCGATGCCCACCTCCCACCCGGCCTGCA
AATACTCCCATTTTTATCCGAAGCAGAGGAGGCGGCACTCCTAGCTCTAG
TAGATAGCGCGGAATGGGATACCGTCCAAGTCTTTCGAAGGACGCAGCAC
TATGGTGCAGCGGCCATTGATTTCAAAACCCGGAAACTTGGGCTGTCTGC
GCCCGTCGCTCCCATTCCTTCTATATGCCAAGCCTTACTTAATCGTATTC
GAAAGCAACAGGAGGCATTGGGTGTGTCCTGGTCGAGTGGACCGTTGGCA
AAGGAGGAGTTTCCTTGTGCGGAGAGAGATCAGATGACAGTGAATGAATA
TGAGCCGGGATCGGGCATAGCTAATCATATCGATGTGCACTCGCTATTCG
AGGACGGCTTTTTGATTGTATCTTTGGGGAGTGCTTGTGTTATGGATTTT
AGGAAGCAAAGAAGGAGACAGGCCGGTGATGGACTGGAAGAGGGAGAAGT
GGATGCACGCTGCTCTCTACTGCTGCCACGAAGGTCTTTGCTTGTGCTGC
AGGGAGAGGCCCGGTACGCATGGAGTCATGGATTGGCGAGTCGGAAAACA
GACAAGGTAAATGGTCAGCTCGTCGCGCGGGGCCGCCGCGTCTCACTTAG
TTTTCGGAGGATGCGTAAGGGAAGCCCGCTAGTGTGTGATTGTTCTTTCC
CCGAGGCCTGCGATAGTCGGGCGGCCACTGCTGGGGCCTGTGGCAGCTAT
ACCAATTGA

Synonyms

Publications