jgi.p|Nanoce1779_2|584060, mRNA_2980 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584060
Unique Name	mRNA_2980
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2826
Alignment location	scaffold_7:396517..399380 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584146
Track	FilteredModels2
ProteinId	584060

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:396517..399380 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584060	gene_2980	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584060	mRNA_2980-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2980	CDS_2980	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:396517..399380+
coding sequence from alignment at scaffold_7:396517..399380+

mRNA sequence

>mRNA_2980 ID=mRNA_2980|Name=jgi.p|Nanoce1779_2|584060|organism=Nannochloropsis oceanica|type=mRNA|length=2826bp
GTTCTAGGTCTTCCAGAGACTCAGGGGCAGCGGCAGCCAAGGATGGTGGG
GGCAGCAGCAGCAGCAGCAGCAGTAAGGATGGAACTCTTCGGCACGTCTC
GACGCAGCTACAAGAACCCAACCCCACGCGGTCCCCATCGTTTATGCTTC
ACGGAGGCGGGATGCCCCAAGGGCCATTGGCGCCATGTCGTCTCGGATAT
CTGTACTCGGCGCCGCTGGTTCACAAGGCTGGAGGACAGGCTAAGGAATT
GGACATGCAGGACGGGATGCACATAGACATTAGCCAGGAACTTGGACGGC
TCAAGCGGACCTTGCACGATGCACAACGCCGCATTCTCTTTCGTGCCGAG
GTGGCTACAGTGAAGAATTGTCGGAAGCTCTTGACGATTGGCTGTCGGAT
GCTGCACTACACGGGAATTGGCAAGCCATCTTGTCTGATTTTTGAGAAAG
AGAAGCCTCTGGGGGAGACTAATATTCTCAACATTGAGACGCTGACAGAG
CTCTTCGCCGCGGGCGGGGTACGGACACAGCTAGTGTTTGTGAGTGCACG
GCATTCAGAGATTGTGGGGAGGGCGTTTTTAGCGGCGGGTGTGCGGCATG
TGGTAGCTATGAAATGGGATGCCAAGGTCTCCGACCGCGCCGCTTGTATA
TTCGCTGAGTTTTTCTACCTGTCCATCGCGATGGGCCGCACCGTACGCCA
GGCATTCGAAGTAGCATCAACGGCAGCAGTGACGGAGACGGGGGCTTCGG
GGGACGACGAGCAATTTCTGCTGTTGCCTGCGGAGGGGGACCACGACCTA
GCCATATTTGATGACGCGGAAGTGGGGAGTTTCGTGGACGAATCTCCCCC
ACCAGTGCCGAATACCTGCGATCCCCCTCCTGTGCCGTTTGTCGGGCGTA
ATGTCGCGGTGCAGGAGGTGGTGGGGCTATTATCGATGGTTTCGCAAGGG
AACCGTTGTATTACTGTGCGTGGGCGGCCAGGGGTGGGAAAGACCGCCCT
AGCTTCTCGTGTTTGCCAATATCTCGCAGAGCGGAACTTATTTGATGCAA
TTTATCTCGTCCCTCTTCGAAGAAAAGTTTACGGGTCGTATGAGAAAGAG
ACACTGTGCAAAGTCATGGGTGCAGCGATCGGGTTTGAAGACGCGTCAAA
CGAGCGTGAGATCGTCTTCCTCCTCCAAGACAAACACCCTTCCGGGCGCG
TCATCATGGTCCTTGACGGACCCGACCGTTTCTTCAACCGATCCAATTCC
CTCGTACAAGTCCTCTCCTACCTGCTGTCACGTATCCATGGCCTCCACCT
TCTAGTCACCGCAGAGGGCTCCGTCCTAGGAAGTGGTTCTGGTCGTCTCG
AAAGCTCCTCCGAAAAAGTCGTCCATCTCGGCCCGCTTTCCGACGTGGCA
ACAGCACACATGCTTGCAAACATTGCTCCTCCTGGTTTCAAACTTGAGGA
GATGATGAGTCGACCCTATGCGACGAAAGAAGAGGCGTATGCAGAATTAG
CGGCCTCGCCCGTGATTAGGGAATTGCGGGGCCATCCGAAGGCGATTGTG
ATGTTTGCCCCTTTGCTCGAAGATCATCGATTAGAAGATTTATTCGAGAA
GGCAAAGCTATGTTATCTTGAGGCAAGTACGGCTGCTGAAATAGATTTGC
CTTCGAAGGAGTAATTTTGATGCAGAGGCGAAGGAGTTGGATGCGTCGAC
GCTGGAAAAGGAGACAGAGGCGGCGAGGAGATTTTTGAGGGATCCCATGT
CCCAGCGATTGTGGCTGGAAGTGGTGCGACAAGGGGGGGCGAGGCAATCG
AGTAGTATGCATCAAGGAGTGCCCTGGTATAGGCTGACGGATGCGCTGCA
GGAGGAGTTGAGAGGGGCGTTGGTGGACGCGTTGAGGATGTTGAGGCTCC
AAGTTACTGATTCCTCTGCTGCCCTTAGTAGTTCGGTAACGATGAAGATG
TCGGTTGGAGCTTTCGCTGGTGCTGGAGGGGTTGAGGAGAGCAAGGCCTC
CATGTCGCCCTCGATGCCCCTGTCGTCTGTGGGGACGGAAGCGAAGGAGG
AAGGAAAAGGCGCCGAGGTATCAACTTATAGGAGAGGAGGGGAGACAGAC
GATGATGGACTGGTCCGTGGTTTGGAGCCGGGGGACATTCAGTTTATCAA
AGATAGGTTGGGAGCCAGGATGCCGGGTAACGATTTGGTGAAAATCACAG
ATTTTTCAGTCTTTTGCGAAGGGTGGGTACCGGTGCAGAAGTCGATCCGG
CTGCTCTGTCGGGAGTGGCTCTGTAATTCCCCCCGGCTTGTGCATGGCTT
TTTGTCGCGTAAGGAGACAGAGGACTTGCTTCAAGGCCACAAGGAGGGCA
CTTTTATCTTTCGCTTTAGCACAAGCCATTTGGGCTTGTTGTCCATTTCG
TTCGTCGGCAAACGGCCTGCCTCGATTAGTGAAAAGAAAACGGACACAGA
TAATGCTGTGATAGCTCCATTCCGGCATTTTCTGGTTCAAGTGGAGGAGG
ACAGGCACTGTGTGGTGTTCATGGAACCCGGCCGCTCCCGGCATGCGTCA
TTGGAGGATTTGGTCATGTCTTCCACCAGTTTGCTTGAGTTTTATCCGGG
TGTACCTAAGGCACAGGCATTGGTGCAGATGCAGAAGTACAAGAACGATT
AGATTTGGGAGGTTTAAGGTAGAAGGAGGGGGGGAAGTAGCAATAGGTTA
GAATTTTGGTCGCGACAGGGTCGAAAAAGAAGGGAGCCGGATAAGGGAGC
AGAATTTTGTGAACATAGATGTGTACGTACAGAAAAAAGTCCGTTTAAGC
AAAAGCAAATATCTATGCATGTGAAA

protein sequence of jgi.p|Nanoce1779_2|584060

>mRNA_2980-protein ID=mRNA_2980-protein|Name=jgi.p|Nanoce1779_2|584060|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MLHGGGMPQGPLAPCRLGYLYSAPLVHKAGGQAKELDMQDGMHIDISQEL
GRLKRTLHDAQRRILFRAEVATVKNCRKLLTIGCRMLHYTGIGKPSCLIF
EKEKPLGETNILNIETLTELFAAGGVRTQLVFVSARHSEIVGRAFLAAGV
RHVVAMKWDAKVSDRAACIFAEFFYLSIAMGRTVRQAFEVASTAAVTETG
ASGDDEQFLLLPAEGDHDLAIFDDAEVGSFVDESPPPVPNTCDPPPVPFV
GRNVAVQEVVGLLSMVSQGNRCITVRGRPGVGKTALASRVCQYLAERNLF
DAIYLVPLRRKVYGSYEKETLCKVMGAAIGFEDASNEREIVFLLQDKHPS
GRVIMVLDGPDRFFNRSNSLVQVLSYLLSRIHGLHLLVTAEGSVLGSGSG
RLESSSEKVVHLGPLSDVATAHMLANIAPPGFKLEEMMSRPYATKEEAYA
ELAASPVIRELRGHPKAIVMFAPLLEDHRLEDLFEKAKLCYLEASTAAEI
DLPSKE*

mRNA from alignment at scaffold_7:396517..399380+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2980 ID=mRNA_2980|Name=jgi.p|Nanoce1779_2|584060|organism=Nannochloropsis oceanica|type=mRNA|length=2864bp|location=Sequence derived from alignment at scaffold_7:396517..399380+ (Nannochloropsis oceanica)
GTTCTAGGTCTTCCAGAGACTCAGGGGCAGCGGCAGCCAAGGATGGTGGG
GGCAGCAGCAGCAGCAGCAGCAGTAAGGATGGAACTCTTCGGCACGTCTC
GACGCAGCTACAAGAACCCAACCCCACGCGGTCCCCATCGTTTATGCTTC
ACGGAGGCGGGATGCCCCAAGGGCCATTGGCGCCATGTCGTCTCGGATAT
CTGTACTCGGCGCCGCTGGTTCACAAGGCTGGAGGACAGGCTAAGGAATT
GGACATGCAGGACGGGATGCACATAGACATTAGCCAGGAACTTGGACGGC
TCAAGCGGACCTTGCACGATGCACAACGCCGCATTCTCTTTCGTGCCGAG
GTGGCTACAGTGAAGAATTGTCGGAAGCTCTTGACGATTGGCTGTCGGAT
GCTGCACTACACGGGAATTGGCAAGCCATCTTGTCTGATTTTTGAGAAAG
AGAAGCCTCTGGGGGAGACTAATATTCTCAACATTGAGACGCTGACAGAG
CTCTTCGCCGCGGGCGGGGTACGGACACAGCTAGTGTTTGTGAGTGCACG
GCATTCAGAGATTGTGGGGAGGGCGTTTTTAGCGGCGGGTGTGCGGCATG
TGGTAGCTATGAAATGGGATGCCAAGGTCTCCGACCGCGCCGCTTGTATA
TTCGCTGAGTTTTTCTACCTGTCCATCGCGATGGGCCGCACCGTACGCCA
GGCATTCGAAGTAGCATCAACGGCAGCAGTGACGGAGACGGGGGCTTCGG
GGGACGACGAGCAATTTCTGCTGTTGCCTGCGGAGGGGGACCACGACCTA
GCCATATTTGATGACGCGGAAGTGGGGAGTTTCGTGGACGAATCTCCCCC
ACCAGTGCCGAATACCTGCGATCCCCCTCCTGTGCCGTTTGTCGGGCGTA
ATGTCGCGGTGCAGGAGGTGGTGGGGCTATTATCGATGGTTTCGCAAGGG
AACCGTTGTATTACTGTGCGTGGGCGGCCAGGGGTGGGAAAGACCGCCCT
AGCTTCTCGTGTTTGCCAATATCTCGCAGAGCGGAACTTATTTGATGCAA
TTTATCTCGTCCCTCTTCGAAGAAAAGTTTACGGGTCGTATGAGAAAGAG
ACACTGTGCAAAGTCATGGGTGCAGCGATCGGGTTTGAAGACGCGTCAAA
CGAGCGTGAGATCGTCTTCCTCCTCCAAGACAAACACCCTTCCGGGCGCG
TCATCATGGTCCTTGACGGACCCGACCGTTTCTTCAACCGATCCAATTCC
CTCGTACAAGTCCTCTCCTACCTGCTGTCACGTATCCATGGCCTCCACCT
TCTAGTCACCGCAGAGGGCTCCGTCCTAGGAAGTGGTTCTGGTCGTCTCG
AAAGCTCCTCCGAAAAAGTCGTCCATCTCGGCCCGCTTTCCGACGTGGCA
ACAGCACACATGCTTGCAAACATTGCTCCTCCTGGTTTCAAACTTGAGGA
GATGATGAGTCGACCCTATGCGACGAAAGAAGAGGCGTATGCAGAATTAG
CGGCCTCGCCCGTGATTAGGGAATTGCGGGGCCATCCGAAGGCGATTGTG
ATGTTTGCCCCTTTGCTCGAAGATCATCGATTAGAAGATTTATTCGAGAA
GGCAAAGCTATGTTATCTTGAGGCAAGTACGGCTGCTGAAATAGATTTGC
CTTCGAAGGAGGAGGAAGAGGGGGGAGGAGGGACGGGGGGGAGGAGGAGT
AATTTTGATGCAGAGGCGAAGGAGTTGGATGCGTCGACGCTGGAAAAGGA
GACAGAGGCGGCGAGGAGATTTTTGAGGGATCCCATGTCCCAGCGATTGT
GGCTGGAAGTGGTGCGACAAGGGGGGGCGAGGCAATCGAGTAGTATGCAT
CAAGGAGTGCCCTGGTATAGGCTGACGGATGCGCTGCAGGAGGAGTTGAG
AGGGGCGTTGGTGGACGCGTTGAGGATGTTGAGGCTCCAAGTTACTGATT
CCTCTGCTGCCCTTAGTAGTTCGGTAACGATGAAGATGTCGGTTGGAGCT
TTCGCTGGTGCTGGAGGGGTTGAGGAGAGCAAGGCCTCCATGTCGCCCTC
GATGCCCCTGTCGTCTGTGGGGACGGAAGCGAAGGAGGAAGGAAAAGGCG
CCGAGGTATCAACTTATAGGAGAGGAGGGGAGACAGACGATGATGGACTG
GTCCGTGGTTTGGAGCCGGGGGACATTCAGTTTATCAAAGATAGGTTGGG
AGCCAGGATGCCGGGTAACGATTTGGTGAAAATCACAGATTTTTCAGTCT
TTTGCGAAGGGTGGGTACCGGTGCAGAAGTCGATCCGGCTGCTCTGTCGG
GAGTGGCTCTGTAATTCCCCCCGGCTTGTGCATGGCTTTTTGTCGCGTAA
GGAGACAGAGGACTTGCTTCAAGGCCACAAGGAGGGCACTTTTATCTTTC
GCTTTAGCACAAGCCATTTGGGCTTGTTGTCCATTTCGTTCGTCGGCAAA
CGGCCTGCCTCGATTAGTGAAAAGAAAACGGACACAGATAATGCTGTGAT
AGCTCCATTCCGGCATTTTCTGGTTCAAGTGGAGGAGGACAGGCACTGTG
TGGTGTTCATGGAACCCGGCCGCTCCCGGCATGCGTCATTGGAGGATTTG
GTCATGTCTTCCACCAGTTTGCTTGAGTTTTATCCGGGTGTACCTAAGGC
ACAGGCATTGGTGCAGATGCAGAAGTACAAGAACGATTAGATTTGGGAGG
TTTAAGGTAGAAGGAGGGGGGGAAGTAGCAATAGGTTAGAATTTTGGTCG
CGACAGGGTCGAAAAAGAAGGGAGCCGGATAAGGGAGCAGAATTTTGTGA
ACATAGATGTGTACGTACAGAAAAAAGTCCGTTTAAGCAAAAGCAAATAT
CTATGCATGTGAAA

Coding sequence (CDS) from alignment at scaffold_7:396517..399380+

>mRNA_2980 ID=mRNA_2980|Name=jgi.p|Nanoce1779_2|584060|organism=Nannochloropsis oceanica|type=CDS|length=3042bp|location=Sequence derived from alignment at scaffold_7:396517..399380+ (Nannochloropsis oceanica)
ATGCTTCACGGAGGCGGGATGCCCCAAGGGCCATTGGCGCCATGTCGTCT
CGGATATCTGTACTCGGCGCCGCTGGTTCACAAGGCTGGAGGACAGGCTA
AGGAATTGGACATGCAGGACGGGATGCACATAGACATTAGCCAGGAACTT
GGACGGCTCAAGCGGACCTTGCACGATGCACAACGCCGCATTCTCTTTCG
TGCCGAGGTGGCTACAGTGAAGAATTGTCGGAAGCTCTTGACGATTGGCT
GTCGGATGCTGCACTACACGGGAATTGGCAAGCCATCTTGTCTGATTTTT
GAGAAAGAGAAGCCTCTGGGGGAGACTAATATTCTCAACATTGAGACGCT
GACAGAGCTCTTCGCCGCGGGCGGGGTACGGACACAGCTAGTGTTTGTGA
GTGCACGGCATTCAGAGATTGTGGGGAGGGCGTTTTTAGCGGCGGGTGTG
CGGCATGTGGTAGCTATGAAATGGGATGCCAAGGTCTCCGACCGCGCCGC
TTGTATATTCGCTGAGTTTTTCTACCTGTCCATCGCGATGGGCCGCACCG
TACGCCAGGCATTCGAAGTAGCATCAACGGCAGCAGTGACGGAGACGGGG
GCTTCGGGGGACGACGAGCAATTTCTGCTGTTGCCTGCGGAGGGGGACCA
CGACCTAGCCATATTTGATGACGCGGAAGTGGGGAGTTTCGTGGACGAAT
CTCCCCCACCAGTGCCGAATACCTGCGATCCCCCTCCTGTGCCGTTTGTC
GGGCGTAATGTCGCGGTGCAGGAGGTGGTGGGGCTATTATCGATGGTTTC
GCAAGGGAACCGTTGTATTACTGTGCGTGGGCGGCCAGGGGTGGGAAAGA
CCGCCCTAGCTTCTCGTGTTTGCCAATATCTCGCAGAGCGGAACTTATTT
GATGCAATTTATCTCGTCCCTCTTCGAAGAAAAGTTTACGGGTCGTATGA
GAAAGAGACACTGTGCAAAGTCATGGGTGCAGCGATCGGGTTTGAAGACG
CGTCAAACGAGCGTGAGATCGTCTTCCTCCTCCAAGACAAACACCCTTCC
GGGCGCGTCATCATGGTCCTTGACGGACCCGACCGTTTCTTCAACCGATC
CAATTCCCTCGTACAAGTCCTCTCCTACCTGCTGTCACGTATCCATGGCC
TCCACCTTCTAGTCACCGCAGAGGGCTCCGTCCTAGGAAGTGGTTCTGGT
CGTCTCGAAAGCTCCTCCGAAAAAGTCGTCCATCTCGGCCCGCTTTCCGA
CGTGGCAACAGCACACATGCTTGCAAACATTGCTCCTCCTGGTTTCAAAC
TTGAGGAGATGATGAGTCGACCCTATGCGACGAAAGAAGAGGCGTATGCA
GAATTAGCGGCCTCGCCCGTGATTAGGGAATTGCGGGGCCATCCGAAGGC
GATTGTGATGTTTGCCCCTTTGCTCGAAGATCATCGATTAGAAGATTTAT
TCGAGAAGGCAAAGCTATGTTATCTTGAGGCAAGTACGGCTGCTGAAATA
GATTTGCCTTCGAAGGAGTAAATGCTTCACGGAGGCGGGATGCCCCAAGG
GCCATTGGCGCCATGTCGTCTCGGATATCTGTACTCGGCGCCGCTGGTTC
ACAAGGCTGGAGGACAGGCTAAGGAATTGGACATGCAGGACGGGATGCAC
ATAGACATTAGCCAGGAACTTGGACGGCTCAAGCGGACCTTGCACGATGC
ACAACGCCGCATTCTCTTTCGTGCCGAGGTGGCTACAGTGAAGAATTGTC
GGAAGCTCTTGACGATTGGCTGTCGGATGCTGCACTACACGGGAATTGGC
AAGCCATCTTGTCTGATTTTTGAGAAAGAGAAGCCTCTGGGGGAGACTAA
TATTCTCAACATTGAGACGCTGACAGAGCTCTTCGCCGCGGGCGGGGTAC
GGACACAGCTAGTGTTTGTGAGTGCACGGCATTCAGAGATTGTGGGGAGG
GCGTTTTTAGCGGCGGGTGTGCGGCATGTGGTAGCTATGAAATGGGATGC
CAAGGTCTCCGACCGCGCCGCTTGTATATTCGCTGAGTTTTTCTACCTGT
CCATCGCGATGGGCCGCACCGTACGCCAGGCATTCGAAGTAGCATCAACG
GCAGCAGTGACGGAGACGGGGGCTTCGGGGGACGACGAGCAATTTCTGCT
GTTGCCTGCGGAGGGGGACCACGACCTAGCCATATTTGATGACGCGGAAG
TGGGGAGTTTCGTGGACGAATCTCCCCCACCAGTGCCGAATACCTGCGAT
CCCCCTCCTGTGCCGTTTGTCGGGCGTAATGTCGCGGTGCAGGAGGTGGT
GGGGCTATTATCGATGGTTTCGCAAGGGAACCGTTGTATTACTGTGCGTG
GGCGGCCAGGGGTGGGAAAGACCGCCCTAGCTTCTCGTGTTTGCCAATAT
CTCGCAGAGCGGAACTTATTTGATGCAATTTATCTCGTCCCTCTTCGAAG
AAAAGTTTACGGGTCGTATGAGAAAGAGACACTGTGCAAAGTCATGGGTG
CAGCGATCGGGTTTGAAGACGCGTCAAACGAGCGTGAGATCGTCTTCCTC
CTCCAAGACAAACACCCTTCCGGGCGCGTCATCATGGTCCTTGACGGACC
CGACCGTTTCTTCAACCGATCCAATTCCCTCGTACAAGTCCTCTCCTACC
TGCTGTCACGTATCCATGGCCTCCACCTTCTAGTCACCGCAGAGGGCTCC
GTCCTAGGAAGTGGTTCTGGTCGTCTCGAAAGCTCCTCCGAAAAAGTCGT
CCATCTCGGCCCGCTTTCCGACGTGGCAACAGCACACATGCTTGCAAACA
TTGCTCCTCCTGGTTTCAAACTTGAGGAGATGATGAGTCGACCCTATGCG
ACGAAAGAAGAGGCGTATGCAGAATTAGCGGCCTCGCCCGTGATTAGGGA
ATTGCGGGGCCATCCGAAGGCGATTGTGATGTTTGCCCCTTTGCTCGAAG
ATCATCGATTAGAAGATTTATTCGAGAAGGCAAAGCTATGTTATCTTGAG
GCAAGTACGGCTGCTGAAATAGATTTGCCTTCGAAGGAGTAA

Synonyms

Publications