jgi.p|Nanoce1779_2|576851, mRNA_298 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576851
Unique NamemRNA_298
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1816
Alignment locationscaffold_3:733260..735075 -

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Properties
Property NameValue
TranscriptId576937
TrackFilteredModels2
ProteinId576851
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:733260..735075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576851gene_298Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576851mRNA_298-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_298CDS_298Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_298 ID=mRNA_298|Name=jgi.p|Nanoce1779_2|576851|organism=Nannochloropsis oceanica|type=mRNA|length=1816bp
TCTTATAAGCCATCTACAAGTCCGACCCGGAACTACCTACCACATGTTCT
AATTCAGATTCCTTCCTTCGCCGTCTTAAGTCCTGTTTCCTTCCTGCGAC
GTATGATAAACTCGTTAGGAACAAGTTACATCAATACGAATGCTTTCCGG
ATACTAGACCTTCCACTTGTCTTTACGAGCTGTATCGACTCAACGAGGAA
CTTCCCATCGCCGATCGTCCCTCAGACCGAGTTTAATCGAAATTCTTCAA
GCAACCCTCCCTACCACTTACCAGCTGGTCCTCTCCTAAATTCCTACAAC
CAATGCCTTTGTTTTCGCCGCCGCAGCCGACAAGCTATTTGATGTGACTC
CTTCAACTGATGTGTCAATCGACCCACCTCTCTTTGTCAAGCTTTGTCAT
GTCTAGCCGCACCTCCCCTCGCAACATCAACTCTTCCTTAATGCTTGATG
TTCGCTATAAGTGCTGGCATACCCCTCTTGTTGACGGCACACGTCATTTT
GCTTCAGAATGCCCAAACGCAAGACGAGAGAAATCCCAAGATTTCCCCTA
TTTACAACAAGTTCGTGACCTTGTTGTAGCCACACGTCTCAGACACCGTA
CTTCCTCGTCACCATCCCCTTCTCCCCGTCATAACAAGATCTCGTATACA
CCATCGCCTTCTCGTTACGCTCGCCCCACCCCTGTCTCCCCATCGCGTTT
CGTTTGCTCAGCAAAACCCACCTGGTCTTGTCGAAGGAATATTCGGACCG
AAGTATGTAGCCGTACTTTTCGATGACTGGATTATTAAAATCCGATCTTC
TGAAACATATCCGCCCTCCCGCAAACCTTGCCAACGAGGTTGTAAACCAA
CACGTTCGCACGTACGCGACTGAGGCTGTCGATGCTTTGTACGCCGTAGT
GCGCGCAAAAGCCGAGACGACATCTTGCTACGGAGCTCGCGACAGCATGA
CGCCTGTTCCATATACAGAAGAGGCTACCCTCCCAACAGTCGTCGCACAT
ATGATCAACCTGATCGGACCCGTCGAAGTAGCAACGACTGCACGTCGTAC
AGTCTTCGTTCCCTACATCCGTGTTCAAGAAAACGGAAGGACCGAAGTCC
CCAACGCCCGGTACAATACTGATGACGCAATTACGTGTGAGACCATCCTC
AACACGAGCCATCAGTTCACAACCTCCAAAACAGACGCAAATCTTTTGAC
GTCTTCTCATTGGAGGACCGCAATGCCTTTCCCCGACAGTACTGGTTATG
GTACATGTTTGTATCAACTTGTTGGTGAAGCACAGACTGAACCTTTCGAC
TTAGTCGGCGCGCTGTTCTTCAGGAACGCGCTCCATCCTGGAAATATCGT
CAACCAAGACGTAATCGCCCAGATTGTCTTCGGCGCCACAAGCGTCCCTA
CCGCCCAGCACTTCCGTGCTTATGTAGACGCCAACCGTAAAGCTCGGTCT
TCAACCGAACATTACGTCATCAGCGACCCCGTCCCCACGACCCCAACACC
AATCATAAACCTTCCGTGTTGATGAACGCTCAAGGTCAAGTTGTAGGTCT
TTTACACCAACTCCCCGCTCCCGCCCCTGGCTCCTGCCCTCCCGGCGGCG
CTGCCCGTGAAGCTCCTCCTCCTCCTTGCTATTCCGCAGACGAAGTCGGT
GCGCTCCAACGCTTTACCATTCGCTTCCTCCTGTTTGACTACACCAGCGC
GGTCAACATGCAGAACGGCGACATCTTTCACATGTTTAACAACTTGTGTA
CACACGCCCCCCGTAAGTAGATTCACTTAGATAGATCTAGTTACATACTT
ATGATAAAGAAACAAG
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protein sequence of jgi.p|Nanoce1779_2|576851

>mRNA_298-protein ID=mRNA_298-protein|Name=jgi.p|Nanoce1779_2|576851|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MTGLLKSDLLKHIRPPANLANEVVNQHVRTYATEAVDALYAVVRAKAETT
SCYGARDSMTPVPYTEEATLPTVVAHMINLIGPVEVATTARRTVFVPYIR
VQENGRTEVPNARYNTDDAITCETILNTSHQFTTSKTDANLLTSSHWRTA
MPFPDSTGYGTCLYQLVGEAQTEPFDLVGALFFRNALHPGNIVNQDVIAQ
IVFGATSVPTAQHFRAYVDANRKARSSTEHYVISDPVPTTPTPIINLPC*
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mRNA from alignment at scaffold_3:733260..735075-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_298 ID=mRNA_298|Name=jgi.p|Nanoce1779_2|576851|organism=Nannochloropsis oceanica|type=mRNA|length=1816bp|location=Sequence derived from alignment at scaffold_3:733260..735075- (Nannochloropsis oceanica)
TCTTATAAGCCATCTACAAGTCCGACCCGGAACTACCTACCACATGTTCT
AATTCAGATTCCTTCCTTCGCCGTCTTAAGTCCTGTTTCCTTCCTGCGAC
GTATGATAAACTCGTTAGGAACAAGTTACATCAATACGAATGCTTTCCGG
ATACTAGACCTTCCACTTGTCTTTACGAGCTGTATCGACTCAACGAGGAA
CTTCCCATCGCCGATCGTCCCTCAGACCGAGTTTAATCGAAATTCTTCAA
GCAACCCTCCCTACCACTTACCAGCTGGTCCTCTCCTAAATTCCTACAAC
CAATGCCTTTGTTTTCGCCGCCGCAGCCGACAAGCTATTTGATGTGACTC
CTTCAACTGATGTGTCAATCGACCCACCTCTCTTTGTCAAGCTTTGTCAT
GTCTAGCCGCACCTCCCCTCGCAACATCAACTCTTCCTTAATGCTTGATG
TTCGCTATAAGTGCTGGCATACCCCTCTTGTTGACGGCACACGTCATTTT
GCTTCAGAATGCCCAAACGCAAGACGAGAGAAATCCCAAGATTTCCCCTA
TTTACAACAAGTTCGTGACCTTGTTGTAGCCACACGTCTCAGACACCGTA
CTTCCTCGTCACCATCCCCTTCTCCCCGTCATAACAAGATCTCGTATACA
CCATCGCCTTCTCGTTACGCTCGCCCCACCCCTGTCTCCCCATCGCGTTT
CGTTTGCTCAGCAAAACCCACCTGGTCTTGTCGAAGGAATATTCGGACCG
AAGTATGTAGCCGTACTTTTCGATGACTGGATTATTAAAATCCGATCTTC
TGAAACATATCCGCCCTCCCGCAAACCTTGCCAACGAGGTTGTAAACCAA
CACGTTCGCACGTACGCGACTGAGGCTGTCGATGCTTTGTACGCCGTAGT
GCGCGCAAAAGCCGAGACGACATCTTGCTACGGAGCTCGCGACAGCATGA
CGCCTGTTCCATATACAGAAGAGGCTACCCTCCCAACAGTCGTCGCACAT
ATGATCAACCTGATCGGACCCGTCGAAGTAGCAACGACTGCACGTCGTAC
AGTCTTCGTTCCCTACATCCGTGTTCAAGAAAACGGAAGGACCGAAGTCC
CCAACGCCCGGTACAATACTGATGACGCAATTACGTGTGAGACCATCCTC
AACACGAGCCATCAGTTCACAACCTCCAAAACAGACGCAAATCTTTTGAC
GTCTTCTCATTGGAGGACCGCAATGCCTTTCCCCGACAGTACTGGTTATG
GTACATGTTTGTATCAACTTGTTGGTGAAGCACAGACTGAACCTTTCGAC
TTAGTCGGCGCGCTGTTCTTCAGGAACGCGCTCCATCCTGGAAATATCGT
CAACCAAGACGTAATCGCCCAGATTGTCTTCGGCGCCACAAGCGTCCCTA
CCGCCCAGCACTTCCGTGCTTATGTAGACGCCAACCGTAAAGCTCGGTCT
TCAACCGAACATTACGTCATCAGCGACCCCGTCCCCACGACCCCAACACC
AATCATAAACCTTCCGTGTTGATGAACGCTCAAGGTCAAGTTGTAGGTCT
TTTACACCAACTCCCCGCTCCCGCCCCTGGCTCCTGCCCTCCCGGCGGCG
CTGCCCGTGAAGCTCCTCCTCCTCCTTGCTATTCCGCAGACGAAGTCGGT
GCGCTCCAACGCTTTACCATTCGCTTCCTCCTGTTTGACTACACCAGCGC
GGTCAACATGCAGAACGGCGACATCTTTCACATGTTTAACAACTTGTGTA
CACACGCCCCCCGTAAGTAGATTCACTTAGATAGATCTAGTTACATACTT
ATGATAAAGAAACAAG
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Coding sequence (CDS) from alignment at scaffold_3:733260..735075-

>mRNA_298 ID=mRNA_298|Name=jgi.p|Nanoce1779_2|576851|organism=Nannochloropsis oceanica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_3:733260..735075- (Nannochloropsis oceanica)
ATGACTGGATTATTAAAATCCGATCTTCTGAAACATATCCGCCCTCCCGC
AAACCTTGCCAACGAGGTTGTAAACCAACACGTTCGCACGTACGCGACTG
AGGCTGTCGATGCTTTGTACGCCGTAGTGCGCGCAAAAGCCGAGACGACA
TCTTGCTACGGAGCTCGCGACAGCATGACGCCTGTTCCATATACAGAAGA
GGCTACCCTCCCAACAGTCGTCGCACATATGATCAACCTGATCGGACCCG
TCGAAGTAGCAACGACTGCACGTCGTACAGTCTTCGTTCCCTACATCCGT
GTTCAAGAAAACGGAAGGACCGAAGTCCCCAACGCCCGGTACAATACTGA
TGACGCAATTACGTGTGAGACCATCCTCAACACGAGCCATCAGTTCACAA
CCTCCAAAACAGACGCAAATCTTTTGACGTCTTCTCATTGGAGGACCGCA
ATGCCTTTCCCCGACAGTACTGGTTATGGTACATGTTTGTATCAACTTGT
TGGTGAAGCACAGACTGAACCTTTCGACTTAGTCGGCGCGCTGTTCTTCA
GGAACGCGCTCCATCCTGGAAATATCGTCAACCAAGACGTAATCGCCCAG
ATTGTCTTCGGCGCCACAAGCGTCCCTACCGCCCAGCACTTCCGTGCTTA
TGTAGACGCCAACCGTAAAGCTCGGTCTTCAACCGAACATTACGTCATCA
GCGACCCCGTCCCCACGACCCCAACACCAATCATAAACCTTCCGTGTTGA
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Synonyms
Publications