jgi.p|Nanoce1779_2|622929, mRNA_2979 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|622929
Unique Name	mRNA_2979
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1656
Alignment location	scaffold_7:393647..395468 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	623015
Track	FilteredModels2
ProteinId	622929

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:393647..395468 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622929	gene_2979	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622929	mRNA_2979-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2979	CDS_2979	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:393647..395468-
coding sequence from alignment at scaffold_7:393647..395468-

mRNA sequence

>mRNA_2979 ID=mRNA_2979|Name=jgi.p|Nanoce1779_2|622929|organism=Nannochloropsis oceanica|type=mRNA|length=1656bp
ATGCTGGCGTTAATGGGGGCTAGCGGGGCGGGGAAAAGTAGTTTGCTGGA
TTGCATTTCGCTGCGGAATCATCGTTTTGAGGGTTGTGTGTACCTTGATC
GAAATCCAGTGGATACCCATTTCTTCTCGAGCACGGCGTACGTGCATCAG
GTGGATATGTTTTTTGCGACTCTGACAGTGCGGGAGCATTTGACATTTCA
TGCCATGGTACGTGTGAGGAAGGAAGTAGCTGTGGCAGATCGTTTGCGAC
GGGTGGAGGAGGTGATTGAAGCCGTGAATTTGAGCAAGTGTGCCGAGTCG
TTGATCGGTGGCCCGCAGGCTTTTATTCGTGGGATTTCGGGAGGCGAACG
GAAGCGGCTGTCGGTGGCGACGGAATTGCTGTCCGACCCCGAGATCATCT
TTGCGGATGAGCCGACGTCAGGTTTAGATGCTTTTATGGCTTTATCAGTC
TGCAAAATTCTCAAGGGCCTGGCGAACAGCAGCAGGCTCGTCGTTTGCGT
CATCCACCAGCCCTCCTCGGAAATCTTCGAGCTCTTCACGCACCTCACCC
TCCTCGCCCGGGGACAAACCGCCTACTGCGGGACCCGTGCGGGGGGTGTT
GAGTACTTTGCTAACACCTTAGGTTTGGAATGCCCTCAGTTTTACAACCC
TGCGGACTATTTAATCGAGAAATTGGCCGTCAATGTGTTGTTGGAGAAGC
CGGAGGTGCCGGTTGAGGACATGTTGCGCGCCTACCAAACGTCGACCCTG
GCGAGGGATAACAGGGCCTGGATGGCGGATGTCGAGGAGGGAGGAAGCGG
GGGAGGGATGAGTGCCTTGGTGTCAAGTCGGGAGTTCCCAGCAACGGCTT
GGACGCAATTCGTACAGAGTTATAAACGGACGGTGAAGTCGTACGGGAGG
GAGCCGGTCTTGGCGAAGGTAAGATTTGGGCAAGCCATATCGATGGGCTT
GATCTTGGGGTTGGTGTACCTGCAGCAGCCGTTTGACTCGAGCGCGACTA
AGAATAGGTTGGGCGCGATGTTTTTATTGATAATGAATCAGAGCATCGCT
TCCATGTTCACGGTGTCGCAGGTGATTCCGAAGGATATGGCGGTTTTCAT
GCGGGAGTACCTGACGAGTGCGAATCGGCCGAGCTCCTATTTTTTGGGTT
TGTCGTTGGCAGAAGTTCCGTATCAGGTGTTGTTTCCGACGATATTTGGG
ACTATTGCTTACTGGTTGATCGGTTTTGCGCCGGAAGCGAGTCGATTTTT
TGTATTCATCGTCACCTTGGTGTTGATGGCGAATGCGAGTTGTAGTTTGG
GGTATGCATTGTCAACATTGACGGGGCACGATGGCGTGGCGGTGGCGTTA
GGACCAGTATTGATGCTGCCGATGAGTTTGTACGCGGGGGTGTTGCATTC
CAGTGACAATGTGCCCTGGTATTTCGTGCCTTTGGACAAGGTGTCGATGA
TAAAGTACGCGTTTCAGGCGATTGTCTTGAATGAGTATGGCTCAGACAAG
TACACTCCAAAATTGCGTCAGTTTGTTTTTGATTATATTGGAGTGGAGGA
AGGGCAGATTGGATTTTGTATTGCCATGTTAGTGGTATTGCTGGTGGGAT
TTCGGTTTCTAGCTTACGTCTTCCTATTGATTCGGGCCAAGCGGGCATTA
ATGTGA

protein sequence of jgi.p|Nanoce1779_2|622929

>mRNA_2979-protein ID=mRNA_2979-protein|Name=jgi.p|Nanoce1779_2|622929|organism=Nannochloropsis oceanica|type=polypeptide|length=552bp
MLALMGASGAGKSSLLDCISLRNHRFEGCVYLDRNPVDTHFFSSTAYVHQ
VDMFFATLTVREHLTFHAMVRVRKEVAVADRLRRVEEVIEAVNLSKCAES
LIGGPQAFIRGISGGERKRLSVATELLSDPEIIFADEPTSGLDAFMALSV
CKILKGLANSSRLVVCVIHQPSSEIFELFTHLTLLARGQTAYCGTRAGGV
EYFANTLGLECPQFYNPADYLIEKLAVNVLLEKPEVPVEDMLRAYQTSTL
ARDNRAWMADVEEGGSGGGMSALVSSREFPATAWTQFVQSYKRTVKSYGR
EPVLAKVRFGQAISMGLILGLVYLQQPFDSSATKNRLGAMFLLIMNQSIA
SMFTVSQVIPKDMAVFMREYLTSANRPSSYFLGLSLAEVPYQVLFPTIFG
TIAYWLIGFAPEASRFFVFIVTLVLMANASCSLGYALSTLTGHDGVAVAL
GPVLMLPMSLYAGVLHSSDNVPWYFVPLDKVSMIKYAFQAIVLNEYGSDK
YTPKLRQFVFDYIGVEEGQIGFCIAMLVVLLVGFRFLAYVFLLIRAKRAL
M*

mRNA from alignment at scaffold_7:393647..395468-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2979 ID=mRNA_2979|Name=jgi.p|Nanoce1779_2|622929|organism=Nannochloropsis oceanica|type=mRNA|length=1822bp|location=Sequence derived from alignment at scaffold_7:393647..395468- (Nannochloropsis oceanica)
ATGCTGGCGTTAATGGGGGCTAGCGGGGCGGGGAAAAGTAGTTTGCTGGA
TTGCATTTCGCTGCGGAATCATCGTTTTGAGGGTTGTGTGTACCTTGATC
GAAATCCAGTGGATACCCATTTCTTCTCGAGCACGGCGTACGTGCATCAG
GTGGATATGTTTTTTGCGACTCTGACAGTGCGGGAGCATTTGACATTTCA
TGCCATGGTACGTGTGAGGAAGGAAGTAGCTGTGGCAGATCGTTTGCGAC
GGGTGGAGGAGGTGATTGAAGCCGTGAATTTGAGCAAGTGTGCCGAGTCG
TTGATCGGTGGCCCGCAGGCTTTTATTCGTGGGATTTCGGGAGGCGAACG
GAAGCGGCTGTCGGTGGCGACGGAATTGCTGTCCGACCCCGAGATCATCT
TTGCGGATGAGCCGACGTCAGGTTTAGATGCTTTTATGGCTTTATCAGGT
ACGTGAATGTTTGGGGTTTCAAGGGCGGGGGGCGGGGGATGGGAGGGGGG
AGGGAAATAGGTTTGTGTCTGTTGCCAGAATCTTTGTCAGAAGGAGTACA
CTTGGTGAGAAGAGGCGGGATATAAACCAACTCCCTCTCTCTCTCCCTCT
CTGTCCTTTTGTAGTCTGCAAAATTCTCAAGGGCCTGGCGAACAGCAGCA
GGCTCGTCGTTTGCGTCATCCACCAGCCCTCCTCGGAAATCTTCGAGCTC
TTCACGCACCTCACCCTCCTCGCCCGGGGACAAACCGCCTACTGCGGGAC
CCGTGCGGGGGGTGTTGAGTACTTTGCTAACACCTTAGGTTTGGAATGCC
CTCAGTTTTACAACCCTGCGGACTATTTAATCGAGAAATTGGCCGTCAAT
GTGTTGTTGGAGAAGCCGGAGGTGCCGGTTGAGGACATGTTGCGCGCCTA
CCAAACGTCGACCCTGGCGAGGGATAACAGGGCCTGGATGGCGGATGTCG
AGGAGGGAGGAAGCGGGGGAGGGATGAGTGCCTTGGTGTCAAGTCGGGAG
TTCCCAGCAACGGCTTGGACGCAATTCGTACAGAGTTATAAACGGACGGT
GAAGTCGTACGGGAGGGAGCCGGTCTTGGCGAAGGTAAGATTTGGGCAAG
CCATATCGATGGGCTTGATCTTGGGGTTGGTGTACCTGCAGCAGCCGTTT
GACTCGAGCGCGACTAAGAATAGGTTGGGCGCGATGTTTTTATTGATAAT
GAATCAGAGCATCGCTTCCATGTTCACGGTGTCGCAGGTGATTCCGAAGG
ATATGGCGGTTTTCATGCGGGAGTACCTGACGAGTGCGAATCGGCCGAGC
TCCTATTTTTTGGGTTTGTCGTTGGCAGAAGTTCCGTATCAGGTGTTGTT
TCCGACGATATTTGGGACTATTGCTTACTGGTTGATCGGTTTTGCGCCGG
AAGCGAGTCGATTTTTTGTATTCATCGTCACCTTGGTGTTGATGGCGAAT
GCGAGTTGTAGTTTGGGGTATGCATTGTCAACATTGACGGGGCACGATGG
CGTGGCGGTGGCGTTAGGACCAGTATTGATGCTGCCGATGAGTTTGTACG
CGGGGGTGTTGCATTCCAGTGACAATGTGCCCTGGTATTTCGTGCCTTTG
GACAAGGTGTCGATGATAAAGTACGCGTTTCAGGCGATTGTCTTGAATGA
GTATGGCTCAGACAAGTACACTCCAAAATTGCGTCAGTTTGTTTTTGATT
ATATTGGAGTGGAGGAAGGGCAGATTGGATTTTGTATTGCCATGTTAGTG
GTATTGCTGGTGGGATTTCGGTTTCTAGCTTACGTCTTCCTATTGATTCG
GGCCAAGCGGGCATTAATGTGA

Coding sequence (CDS) from alignment at scaffold_7:393647..395468-

>mRNA_2979 ID=mRNA_2979|Name=jgi.p|Nanoce1779_2|622929|organism=Nannochloropsis oceanica|type=CDS|length=3312bp|location=Sequence derived from alignment at scaffold_7:393647..395468- (Nannochloropsis oceanica)
TCTGCAAAATTCTCAAGGGCCTGGCGAACAGCAGCAGGCTCGTCGTTTGC
GTCATCCACCAGCCCTCCTCGGAAATCTTCGAGCTCTTCACGCACCTCAC
CCTCCTCGCCCGGGGACAAACCGCCTACTGCGGGACCCGTGCGGGGGGTG
TTGAGTACTTTGCTAACACCTTAGGTTTGGAATGCCCTCAGTTTTACAAC
CCTGCGGACTATTTAATCGAGAAATTGGCCGTCAATGTGTTGTTGGAGAA
GCCGGAGGTGCCGGTTGAGGACATGTTGCGCGCCTACCAAACGTCGACCC
TGGCGAGGGATAACAGGGCCTGGATGGCGGATGTCGAGGAGGGAGGAAGC
GGGGGAGGGATGAGTGCCTTGGTGTCAAGTCGGGAGTTCCCAGCAACGGC
TTGGACGCAATTCGTACAGAGTTATAAACGGACGGTGAAGTCGTACGGGA
GGGAGCCGGTCTTGGCGAAGGTAAGATTTGGGCAAGCCATATCGATGGGC
TTGATCTTGGGGTTGGTGTACCTGCAGCAGCCGTTTGACTCGAGCGCGAC
TAAGAATAGGTTGGGCGCGATGTTTTTATTGATAATGAATCAGAGCATCG
CTTCCATGTTCACGGTGTCGCAGGTGATTCCGAAGGATATGGCGGTTTTC
ATGCGGGAGTACCTGACGAGTGCGAATCGGCCGAGCTCCTATTTTTTGGG
TTTGTCGTTGGCAGAAGTTCCGTATCAGGTGTTGTTTCCGACGATATTTG
GGACTATTGCTTACTGGTTGATCGGTTTTGCGCCGGAAGCGAGTCGATTT
TTTGTATTCATCGTCACCTTGGTGTTGATGGCGAATGCGAGTTGTAGTTT
GGGGTATGCATTGTCAACATTGACGGGGCACGATGGCGTGGCGGTGGCGT
TAGGACCAGTATTGATGCTGCCGATGAGTTTGTACGCGGGGGTGTTGCAT
TCCAGTGACAATGTGCCCTGGTATTTCGTGCCTTTGGACAAGGTGTCGAT
GATAAAGTACGCGTTTCAGGCGATTGTCTTGAATGAGTATGGCTCAGACA
AGTACACTCCAAAATTGCGTCAGTTTGTTTTTGATTATATTGGAGTGGAG
GAAGGGCAGATTGGATTTTGTATTGCCATGTTAGTGGTATTGCTGGTGGG
ATTTCGGTTTCTAGCTTACGTCTTCCTATTGATTCGGGCCAAGCGGGCAT
TAATGTGAATGCTGGCGTTAATGGGGGCTAGCGGGGCGGGGAAAAGTAGT
TTGCTGGATTGCATTTCGCTGCGGAATCATCGTTTTGAGGGTTGTGTGTA
CCTTGATCGAAATCCAGTGGATACCCATTTCTTCTCGAGCACGGCGTACG
TGCATCAGGTGGATATGTTTTTTGCGACTCTGACAGTGCGGGAGCATTTG
ACATTTCATGCCATGGTACGTGTGAGGAAGGAAGTAGCTGTGGCAGATCG
TTTGCGACGGGTGGAGGAGGTGATTGAAGCCGTGAATTTGAGCAAGTGTG
CCGAGTCGTTGATCGGTGGCCCGCAGGCTTTTATTCGTGGGATTTCGGGA
GGCGAACGGAAGCGGCTGTCGGTGGCGACGGAATTGCTGTCCGACCCCGA
GATCATCTTTGCGGATGAGCCGACGTCAGGTTTAGATGCTTTTATGGCTT
TATCAGTCTGCAAAATTCTCAAGGGCCTGGCGAACAGCAGCAGGCTCGTC
GTTTGCGTCATCCACCAGCCCTCCTCGGAAATCTTCGAGCTCTTCACGCA
CCTCACCCTCCTCGCCCGGGGACAAACCGCCTACTGCGGGACCCGTGCGG
GGGGTGTTGAGTACTTTGCTAACACCTTAGGTTTGGAATGCCCTCAGTTT
TACAACCCTGCGGACTATTTAATCGAGAAATTGGCCGTCAATGTGTTGTT
GGAGAAGCCGGAGGTGCCGGTTGAGGACATGTTGCGCGCCTACCAAACGT
CGACCCTGGCGAGGGATAACAGGGCCTGGATGGCGGATGTCGAGGAGGGA
GGAAGCGGGGGAGGGATGAGTGCCTTGGTGTCAAGTCGGGAGTTCCCAGC
AACGGCTTGGACGCAATTCGTACAGAGTTATAAACGGACGGTGAAGTCGT
ACGGGAGGGAGCCGGTCTTGGCGAAGGTAAGATTTGGGCAAGCCATATCG
ATGGGCTTGATCTTGGGGTTGGTGTACCTGCAGCAGCCGTTTGACTCGAG
CGCGACTAAGAATAGGTTGGGCGCGATGTTTTTATTGATAATGAATCAGA
GCATCGCTTCCATGTTCACGGTGTCGCAGGTGATTCCGAAGGATATGGCG
GTTTTCATGCGGGAGTACCTGACGAGTGCGAATCGGCCGAGCTCCTATTT
TTTGGGTTTGTCGTTGGCAGAAGTTCCGTATCAGGTGTTGTTTCCGACGA
TATTTGGGACTATTGCTTACTGGTTGATCGGTTTTGCGCCGGAAGCGAGT
CGATTTTTTGTATTCATCGTCACCTTGGTGTTGATGGCGAATGCGAGTTG
TAGTTTGGGGTATGCATTGTCAACATTGACGGGGCACGATGGCGTGGCGG
TGGCGTTAGGACCAGTATTGATGCTGCCGATGAGTTTGTACGCGGGGGTG
TTGCATTCCAGTGACAATGTGCCCTGGTATTTCGTGCCTTTGGACAAGGT
GTCGATGATAAAGTACGCGTTTCAGGCGATTGTCTTGAATGAGTATGGCT
CAGACAAGTACACTCCAAAATTGCGTCAGTTTGTTTTTGATTATATTGGA
GTGGAGGAAGGGCAGATTGGATTTTGTATTGCCATGTTAGTGGTATTGCT
GGTGGGATTTCGGTTTCTAGCTTACGTCTTCCTATTGATTCGGGCCAAGC
GGGCATTAATGTGAATGCTGGCGTTAATGGGGGCTAGCGGGGCGGGGAAA
AGTAGTTTGCTGGATTGCATTTCGCTGCGGAATCATCGTTTTGAGGGTTG
TGTGTACCTTGATCGAAATCCAGTGGATACCCATTTCTTCTCGAGCACGG
CGTACGTGCATCAGGTGGATATGTTTTTTGCGACTCTGACAGTGCGGGAG
CATTTGACATTTCATGCCATGGTACGTGTGAGGAAGGAAGTAGCTGTGGC
AGATCGTTTGCGACGGGTGGAGGAGGTGATTGAAGCCGTGAATTTGAGCA
AGTGTGCCGAGTCGTTGATCGGTGGCCCGCAGGCTTTTATTCGTGGGATT
TCGGGAGGCGAACGGAAGCGGCTGTCGGTGGCGACGGAATTGCTGTCCGA
CCCCGAGATCATCTTTGCGGATGAGCCGACGTCAGGTTTAGATGCTTTTA
TGGCTTTATCAG

Synonyms

Publications