jgi.p|Nanoce1779_2|664247, mRNA_2978 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|664247
Unique NamemRNA_2978
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1294
Alignment locationscaffold_7:391830..393214 -

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Properties
Property NameValue
TranscriptId664333
TrackFilteredModels2
ProteinId664247
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:391830..393214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|664247gene_2978Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|664247mRNA_2978-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2978CDS_2978Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2978 ID=mRNA_2978|Name=jgi.p|Nanoce1779_2|664247|organism=Nannochloropsis oceanica|type=mRNA|length=1294bp
GGACCATTTTCGTCGTTCGTCCGCAGCAGCACTTTTTTGTTTCTTTCAGT
GTCAAATTCTCACTCGATCGTTTTGACGACACAAACACAACAACGACATA
ATTATCAAGGGTATGTCACCGCAGCCGCTACAGCTACAGACCTCCTCTGC
GTCATCGACCACATCTGCTGCTGCTGATGCTGCTGCTTCTGTCCCAGCGC
AAGACTGGAGAAGAGTCGAGGGAACGCTTTTTCTTATGATGGAGTCCATC
GTCGAGAAGCTAAAAGTGCTCGATTTAAAGGGTGCCGGTAGACCCCTGTC
GTGTCCTCCTCCTCGCCTGGACAGGTTGTCCTTCGTAGTAAAGCAGCCGC
GACAGCACGCGCTGTTTCTCACGGTAGCATCATGGCTGTGCAATCGATTG
AAGGGTGAATCCGATCCTACACACTGCCACACCACCGTTGAGGCACTCGT
CGCCGACCTCAGCAACCTGCAGCTTTGCGGCATGTCAACGGGAGAAGAGA
TGGCTGCACTAAAGCTAGGATACGGAAAGGACGTATGCCGATTGTTGGAC
ATTCTTTGCAATGCTGCTCTGGCGAAAATTGGATTTGTATGGCAAGCTCC
AGTGTACGTGCCATCGGAAGAGACTTTGAATAAGGCTGAGAGCGAGGAGG
CAGCAGCAGCACCCGAAAAGAACGGATCCACAAGCATGTTGTCTTTCACG
ACTCTCCAACCAGAAGCTAAATTGGCAGCTAAATTGACAGAAGCCAAAGA
ATCCAAGAGTTGCACAAGTCCAGATGTCGCCGAGGGCAAGAGCTGGGACC
CCAAACTCCCACTGAAGCACGACGAGGAGAGTGAAAGCAAAGAGCAGCGG
TGCAGGGAGCGAGTGGGACAAGTCAAGGTTCAAATTAATGAAGCTGAAAA
CGCGCACCAGATTAAACAAGGACGGGTGGACACTCTCAAGATAGAGTTCG
GGCGGCTCCAAGATCGATGCGACCGTTTGCAGCGCGAAGAAGAGGAGGCT
CTCCGATGGGAACACCCATCAGGAGAGGAAGGCTCGACGTGGCAGACAGG
AGGAGGAAGTGGAGGAAAGGGAGGAGAAAGAATGGCATATGACTCTCCAA
TGGTAATGATGAGACGAGGCTTGGAAAAGGTGAATGAAGAAATTAAGGCA
TTTGACGTACGAATAGGGGTGATGCAGCACATACTGCTGCATCGAGCTGG
CCGCTTGAGGGCACTGGAGGAGGAAGAGGAGGAGGACGAGGAGGAGGAGA
CAAGGAGGGGAAGAGAGAATGAGCAGGCTATGAGGCTATATTGA
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protein sequence of jgi.p|Nanoce1779_2|664247

>mRNA_2978-protein ID=mRNA_2978-protein|Name=jgi.p|Nanoce1779_2|664247|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MSPQPLQLQTSSASSTTSAAADAAASVPAQDWRRVEGTLFLMMESIVEKL
KVLDLKGAGRPLSCPPPRLDRLSFVVKQPRQHALFLTVASWLCNRLKGES
DPTHCHTTVEALVADLSNLQLCGMSTGEEMAALKLGYGKDVCRLLDILCN
AALAKIGFVWQAPVYVPSEETLNKAESEEAAAAPEKNGSTSMLSFTTLQP
EAKLAAKLTEAKESKSCTSPDVAEGKSWDPKLPLKHDEESESKEQRCRER
VGQVKVQINEAENAHQIKQGRVDTLKIEFGRLQDRCDRLQREEEEALRWE
HPSGEEGSTWQTGGGSGGKGGERMAYDSPMVMMRRGLEKVNEEIKAFDVR
IGVMQHILLHRAGRLRALEEEEEEDEEEETRRGRENEQAMRLY*
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mRNA from alignment at scaffold_7:391830..393214-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2978 ID=mRNA_2978|Name=jgi.p|Nanoce1779_2|664247|organism=Nannochloropsis oceanica|type=mRNA|length=1385bp|location=Sequence derived from alignment at scaffold_7:391830..393214- (Nannochloropsis oceanica)
GGACCATTTTCGTCGTTCGTCCGCAGCAGCACTTTTTTGTTTCTTTCAGT
GTCAAATTCTCACTCGATCGTTTTGACGACACAAACACAACAACGACATA
ATTATCAAGGGTATGTCACCGCAGCCGCTACAGCTACAGACCTCCTCTGC
GTCATCGACCACATCTGCTGCTGCTGATGCTGCTGCTTCTGTCCCAGCGC
AAGACTGGAGAAGAGTCGAGGTAGGGGTACACTTGATGCAGGGCTACGCG
GCAAAGAAAAAATGTACCAGTAGTCGATAACAATAAATTTACCACATTAC
AAAACCATCAGGGAACGCTTTTTCTTATGATGGAGTCCATCGTCGAGAAG
CTAAAAGTGCTCGATTTAAAGGGTGCCGGTAGACCCCTGTCGTGTCCTCC
TCCTCGCCTGGACAGGTTGTCCTTCGTAGTAAAGCAGCCGCGACAGCACG
CGCTGTTTCTCACGGTAGCATCATGGCTGTGCAATCGATTGAAGGGTGAA
TCCGATCCTACACACTGCCACACCACCGTTGAGGCACTCGTCGCCGACCT
CAGCAACCTGCAGCTTTGCGGCATGTCAACGGGAGAAGAGATGGCTGCAC
TAAAGCTAGGATACGGAAAGGACGTATGCCGATTGTTGGACATTCTTTGC
AATGCTGCTCTGGCGAAAATTGGATTTGTATGGCAAGCTCCAGTGTACGT
GCCATCGGAAGAGACTTTGAATAAGGCTGAGAGCGAGGAGGCAGCAGCAG
CACCCGAAAAGAACGGATCCACAAGCATGTTGTCTTTCACGACTCTCCAA
CCAGAAGCTAAATTGGCAGCTAAATTGACAGAAGCCAAAGAATCCAAGAG
TTGCACAAGTCCAGATGTCGCCGAGGGCAAGAGCTGGGACCCCAAACTCC
CACTGAAGCACGACGAGGAGAGTGAAAGCAAAGAGCAGCGGTGCAGGGAG
CGAGTGGGACAAGTCAAGGTTCAAATTAATGAAGCTGAAAACGCGCACCA
GATTAAACAAGGACGGGTGGACACTCTCAAGATAGAGTTCGGGCGGCTCC
AAGATCGATGCGACCGTTTGCAGCGCGAAGAAGAGGAGGCTCTCCGATGG
GAACACCCATCAGGAGAGGAAGGCTCGACGTGGCAGACAGGAGGAGGAAG
TGGAGGAAAGGGAGGAGAAAGAATGGCATATGACTCTCCAATGGTAATGA
TGAGACGAGGCTTGGAAAAGGTGAATGAAGAAATTAAGGCATTTGACGTA
CGAATAGGGGTGATGCAGCACATACTGCTGCATCGAGCTGGCCGCTTGAG
GGCACTGGAGGAGGAAGAGGAGGAGGACGAGGAGGAGGAGACAAGGAGGG
GAAGAGAGAATGAGCAGGCTATGAGGCTATATTGA
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Coding sequence (CDS) from alignment at scaffold_7:391830..393214-

>mRNA_2978 ID=mRNA_2978|Name=jgi.p|Nanoce1779_2|664247|organism=Nannochloropsis oceanica|type=CDS|length=2364bp|location=Sequence derived from alignment at scaffold_7:391830..393214- (Nannochloropsis oceanica)
GGAACGCTTTTTCTTATGATGGAGTCCATCGTCGAGAAGCTAAAAGTGCT
CGATTTAAAGGGTGCCGGTAGACCCCTGTCGTGTCCTCCTCCTCGCCTGG
ACAGGTTGTCCTTCGTAGTAAAGCAGCCGCGACAGCACGCGCTGTTTCTC
ACGGTAGCATCATGGCTGTGCAATCGATTGAAGGGTGAATCCGATCCTAC
ACACTGCCACACCACCGTTGAGGCACTCGTCGCCGACCTCAGCAACCTGC
AGCTTTGCGGCATGTCAACGGGAGAAGAGATGGCTGCACTAAAGCTAGGA
TACGGAAAGGACGTATGCCGATTGTTGGACATTCTTTGCAATGCTGCTCT
GGCGAAAATTGGATTTGTATGGCAAGCTCCAGTGTACGTGCCATCGGAAG
AGACTTTGAATAAGGCTGAGAGCGAGGAGGCAGCAGCAGCACCCGAAAAG
AACGGATCCACAAGCATGTTGTCTTTCACGACTCTCCAACCAGAAGCTAA
ATTGGCAGCTAAATTGACAGAAGCCAAAGAATCCAAGAGTTGCACAAGTC
CAGATGTCGCCGAGGGCAAGAGCTGGGACCCCAAACTCCCACTGAAGCAC
GACGAGGAGAGTGAAAGCAAAGAGCAGCGGTGCAGGGAGCGAGTGGGACA
AGTCAAGGTTCAAATTAATGAAGCTGAAAACGCGCACCAGATTAAACAAG
GACGGGTGGACACTCTCAAGATAGAGTTCGGGCGGCTCCAAGATCGATGC
GACCGTTTGCAGCGCGAAGAAGAGGAGGCTCTCCGATGGGAACACCCATC
AGGAGAGGAAGGCTCGACGTGGCAGACAGGAGGAGGAAGTGGAGGAAAGG
GAGGAGAAAGAATGGCATATGACTCTCCAATGGTAATGATGAGACGAGGC
TTGGAAAAGGTGAATGAAGAAATTAAGGCATTTGACGTACGAATAGGGGT
GATGCAGCACATACTGCTGCATCGAGCTGGCCGCTTGAGGGCACTGGAGG
AGGAAGAGGAGGAGGACGAGGAGGAGGAGACAAGGAGGGGAAGAGAGAAT
GAGCAGGCTATGAGGCTATATTGAATGTCACCGCAGCCGCTACAGCTACA
GACCTCCTCTGCGTCATCGACCACATCTGCTGCTGCTGATGCTGCTGCTT
CTGTCCCAGCGCAAGACTGGAGAAGAGTCGAGGGAACGCTTTTTCTTATG
ATGGAGTCCATCGTCGAGAAGCTAAAAGTGCTCGATTTAAAGGGTGCCGG
TAGACCCCTGTCGTGTCCTCCTCCTCGCCTGGACAGGTTGTCCTTCGTAG
TAAAGCAGCCGCGACAGCACGCGCTGTTTCTCACGGTAGCATCATGGCTG
TGCAATCGATTGAAGGGTGAATCCGATCCTACACACTGCCACACCACCGT
TGAGGCACTCGTCGCCGACCTCAGCAACCTGCAGCTTTGCGGCATGTCAA
CGGGAGAAGAGATGGCTGCACTAAAGCTAGGATACGGAAAGGACGTATGC
CGATTGTTGGACATTCTTTGCAATGCTGCTCTGGCGAAAATTGGATTTGT
ATGGCAAGCTCCAGTGTACGTGCCATCGGAAGAGACTTTGAATAAGGCTG
AGAGCGAGGAGGCAGCAGCAGCACCCGAAAAGAACGGATCCACAAGCATG
TTGTCTTTCACGACTCTCCAACCAGAAGCTAAATTGGCAGCTAAATTGAC
AGAAGCCAAAGAATCCAAGAGTTGCACAAGTCCAGATGTCGCCGAGGGCA
AGAGCTGGGACCCCAAACTCCCACTGAAGCACGACGAGGAGAGTGAAAGC
AAAGAGCAGCGGTGCAGGGAGCGAGTGGGACAAGTCAAGGTTCAAATTAA
TGAAGCTGAAAACGCGCACCAGATTAAACAAGGACGGGTGGACACTCTCA
AGATAGAGTTCGGGCGGCTCCAAGATCGATGCGACCGTTTGCAGCGCGAA
GAAGAGGAGGCTCTCCGATGGGAACACCCATCAGGAGAGGAAGGCTCGAC
GTGGCAGACAGGAGGAGGAAGTGGAGGAAAGGGAGGAGAAAGAATGGCAT
ATGACTCTCCAATGGTAATGATGAGACGAGGCTTGGAAAAGGTGAATGAA
GAAATTAAGGCATTTGACGTACGAATAGGGGTGATGCAGCACATACTGCT
GCATCGAGCTGGCCGCTTGAGGGCACTGGAGGAGGAAGAGGAGGAGGACG
AGGAGGAGGAGACAAGGAGGGGAAGAGAGAATGAGCAGGCTATGAGGCTA
TATTGAATGTCACCGCAGCCGCTACAGCTACAGACCTCCTCTGCGTCATC
GACCACATCTGCTGCTGCTGATGCTGCTGCTTCTGTCCCAGCGCAAGACT
GGAGAAGAGTCGAG
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Synonyms
Publications