jgi.p|Nanoce1779_2|584048, mRNA_2977 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584048
Unique NamemRNA_2977
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1527
Alignment locationscaffold_7:390375..391901 +

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Properties
Property NameValue
TranscriptId584134
TrackFilteredModels2
ProteinId584048
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:390375..391901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584048gene_2977Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584048mRNA_2977-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2977CDS_2977Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2977 ID=mRNA_2977|Name=jgi.p|Nanoce1779_2|584048|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp
CAAAGCTCAAGGTCTGTGAAAGCGATGTGTCTTTGCTCGATAAGCCGTCT
TGCTTCGCGAGGGGGTACATTTTATTTTCTACATTGTCATCTAACTCCAC
CCACCCGTCTCTCACCACCAAACCACTACACGAGCGTAGGCCCGCCACAC
ACGACCGTGCCTGCTCCCTGGTCGAAGCCCCTCTTCCTTCCTTTCACATC
AAGAAGAAGCAGCAGCATGGCGAAACAAAACCTGTCTTTCCTTCTGCTGG
TCGCGGCCGTCTTCCTCTCGTTCTCCGAGGCCTTCATGGCCACACCCATT
TACAGCAGCAGAGCAGGCACGAGGGCCCAAGCCACCCGCCTGCATGCCGT
GGTCGATGCATCCTCCCCTGATGAGTTTGACAAGGTAAGAAGATGACCGA
TCCTCACAGCTTCTCGCTAGAATATGAGTGATGAGGGAAATAGACAAGAC
TGAGAACAAGCGACCGCATGGCTACTGTTTGTTTAAGTATAATTGTGTCC
TTTCCTCAGATGCGACGTTATTATCGATCCAGATGGAAACGTTTGCGAAA
AGAGCAGTACGATATTTATATAGACACGTACCATTACTACCATGCGCCTC
AAACTTTTCGAATCTCGGTGGATCATGATAACGCAGGCCTCTAGGTGGAC
TTGATCCCTATCAAGCATCAGCGTTTTGTGACGGTGCATGCTGTCGGTTT
ATCAATTTCCCTTACGAGCGTCGTACCCTTTTTCTCCCTCACTGATCTTT
CCCTTTCCGCCAACCATACCTCACACGCTTGAACAGCTAGTCACCGGCGC
TGGAGAGAAGCTCCTGATCGTCGACTACTCCACCACCTGGTGCGGCCCCT
GCAAGATGATGGCCCCCAAATTCGACGAAATGTCCAACCGGTTCGATGCA
GTCTTCGTCAAGGTCATCGGTGACTCGACTCCTGAAGCGGGACAGCTGCT
CAAGAGGGAGGGGGTCCGTTCCGTCCCTGCTTTCCATTTTTGGAAGAATG
GGAAGCGCGTCGATTCGATTTCCGGCGCCGACCCCGAGAGGTTGGAGGAT
GTGATCTTGCAGAACGTCTAGGCGAAGGGAAGGGGGGAAGAAGAGGGAGG
ATGGGAAATAGAGGGCTCCTTCTCCATTGATGTACATGGGGACTGCGCGA
TAACAGGTGTCCAGTCTGGACGGTGGTGTTACGGGCGTGGGAGGAGATGG
AAAGAGAGGACCAGAAAGAAATATGAGAGAACATGTGTGCAACTGGCCGA
GATAGTCGTCTCTGACACTCACCTTAAACATTATTAAAAGAGGGGTTTGA
AATAGATACAGAGCCTGCGCTTCTCTTCTCTTCTTTTCCAGGCGGCTTTT
GGTCCAGACTTGGATCATATTCATCGTAGAAAGAAAAACGCACGCACATG
TCGTCTCGGCACAAGCACAAACACTCGCTTGGAGACGTTTGCTCCTTTTT
CCCGCTCAATATAGCCTCATAGCCTGCTCATTCTCTCTTCCCCTCCTTGT
CTCCTCCTCCTCGTCCTCCTCCTCTTC
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protein sequence of jgi.p|Nanoce1779_2|584048

>mRNA_2977-protein ID=mRNA_2977-protein|Name=jgi.p|Nanoce1779_2|584048|organism=Nannochloropsis oceanica|type=polypeptide|length=128bp
MLSVYQFPLRASYPFSPSLIFPFPPTIPHTLEQLVTGAGEKLLIVDYSTT
WCGPCKMMAPKFDEMSNRFDAVFVKVIGDSTPEAGQLLKREGVRSVPAFH
FWKNGKRVDSISGADPERLEDVILQNV*
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mRNA from alignment at scaffold_7:390375..391901+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2977 ID=mRNA_2977|Name=jgi.p|Nanoce1779_2|584048|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp|location=Sequence derived from alignment at scaffold_7:390375..391901+ (Nannochloropsis oceanica)
CAAAGCTCAAGGTCTGTGAAAGCGATGTGTCTTTGCTCGATAAGCCGTCT
TGCTTCGCGAGGGGGTACATTTTATTTTCTACATTGTCATCTAACTCCAC
CCACCCGTCTCTCACCACCAAACCACTACACGAGCGTAGGCCCGCCACAC
ACGACCGTGCCTGCTCCCTGGTCGAAGCCCCTCTTCCTTCCTTTCACATC
AAGAAGAAGCAGCAGCATGGCGAAACAAAACCTGTCTTTCCTTCTGCTGG
TCGCGGCCGTCTTCCTCTCGTTCTCCGAGGCCTTCATGGCCACACCCATT
TACAGCAGCAGAGCAGGCACGAGGGCCCAAGCCACCCGCCTGCATGCCGT
GGTCGATGCATCCTCCCCTGATGAGTTTGACAAGGTAAGAAGATGACCGA
TCCTCACAGCTTCTCGCTAGAATATGAGTGATGAGGGAAATAGACAAGAC
TGAGAACAAGCGACCGCATGGCTACTGTTTGTTTAAGTATAATTGTGTCC
TTTCCTCAGATGCGACGTTATTATCGATCCAGATGGAAACGTTTGCGAAA
AGAGCAGTACGATATTTATATAGACACGTACCATTACTACCATGCGCCTC
AAACTTTTCGAATCTCGGTGGATCATGATAACGCAGGCCTCTAGGTGGAC
TTGATCCCTATCAAGCATCAGCGTTTTGTGACGGTGCATGCTGTCGGTTT
ATCAATTTCCCTTACGAGCGTCGTACCCTTTTTCTCCCTCACTGATCTTT
CCCTTTCCGCCAACCATACCTCACACGCTTGAACAGCTAGTCACCGGCGC
TGGAGAGAAGCTCCTGATCGTCGACTACTCCACCACCTGGTGCGGCCCCT
GCAAGATGATGGCCCCCAAATTCGACGAAATGTCCAACCGGTTCGATGCA
GTCTTCGTCAAGGTCATCGGTGACTCGACTCCTGAAGCGGGACAGCTGCT
CAAGAGGGAGGGGGTCCGTTCCGTCCCTGCTTTCCATTTTTGGAAGAATG
GGAAGCGCGTCGATTCGATTTCCGGCGCCGACCCCGAGAGGTTGGAGGAT
GTGATCTTGCAGAACGTCTAGGCGAAGGGAAGGGGGGAAGAAGAGGGAGG
ATGGGAAATAGAGGGCTCCTTCTCCATTGATGTACATGGGGACTGCGCGA
TAACAGGTGTCCAGTCTGGACGGTGGTGTTACGGGCGTGGGAGGAGATGG
AAAGAGAGGACCAGAAAGAAATATGAGAGAACATGTGTGCAACTGGCCGA
GATAGTCGTCTCTGACACTCACCTTAAACATTATTAAAAGAGGGGTTTGA
AATAGATACAGAGCCTGCGCTTCTCTTCTCTTCTTTTCCAGGCGGCTTTT
GGTCCAGACTTGGATCATATTCATCGTAGAAAGAAAAACGCACGCACATG
TCGTCTCGGCACAAGCACAAACACTCGCTTGGAGACGTTTGCTCCTTTTT
CCCGCTCAATATAGCCTCATAGCCTGCTCATTCTCTCTTCCCCTCCTTGT
CTCCTCCTCCTCGTCCTCCTCCTCTTC
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Coding sequence (CDS) from alignment at scaffold_7:390375..391901+

>mRNA_2977 ID=mRNA_2977|Name=jgi.p|Nanoce1779_2|584048|organism=Nannochloropsis oceanica|type=CDS|length=384bp|location=Sequence derived from alignment at scaffold_7:390375..391901+ (Nannochloropsis oceanica)
ATGCTGTCGGTTTATCAATTTCCCTTACGAGCGTCGTACCCTTTTTCTCC
CTCACTGATCTTTCCCTTTCCGCCAACCATACCTCACACGCTTGAACAGC
TAGTCACCGGCGCTGGAGAGAAGCTCCTGATCGTCGACTACTCCACCACC
TGGTGCGGCCCCTGCAAGATGATGGCCCCCAAATTCGACGAAATGTCCAA
CCGGTTCGATGCAGTCTTCGTCAAGGTCATCGGTGACTCGACTCCTGAAG
CGGGACAGCTGCTCAAGAGGGAGGGGGTCCGTTCCGTCCCTGCTTTCCAT
TTTTGGAAGAATGGGAAGCGCGTCGATTCGATTTCCGGCGCCGACCCCGA
GAGGTTGGAGGATGTGATCTTGCAGAACGTCTAG
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Synonyms
Publications