jgi.p|Nanoce1779_2|584046, mRNA_2976 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584046
Unique NamemRNA_2976
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length809
Alignment locationscaffold_7:388983..390268 -

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Properties
Property NameValue
TranscriptId584132
TrackFilteredModels2
ProteinId584046
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:388983..390268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584046gene_2976Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584046mRNA_2976-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2976CDS_2976Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2976 ID=mRNA_2976|Name=jgi.p|Nanoce1779_2|584046|organism=Nannochloropsis oceanica|type=mRNA|length=809bp
CACAAGAAGAACAATCGAGAAAGAGAGCGGAGGCAAGTGCGCCGCTTAGG
TCTGATCTCGAGTGAAAGAGAACGTACAGGAGGATGAGATGGTGTAGCCA
GCTACTGAATTGATCTCTCACCATTTTTCACTCCGCTCTGCCCTACAACA
CACAGCCTCTCACCCGAGACTCCCCCTTTAGACGACCTCCCCAGCTCCAC
TCAGTCAGCCATGTCTTTGCGTAAGCTTATCCCCCTGGCAGACCGCATTC
TTGTGCAGCGCATCCTGCCGAAGACCCAAACGGCCGGCGGTGTCTTCCTC
CCCGAAACCAAACTCGACAAGCCGAATGAAGCCAAAGTGATCGCCGTGGG
TCCCGGTGGACGGAAGGCAGACGGGTCGCTGATTCCCCCGAGCGTGAAGG
AAGGGGACACGGTGTTGTTGCCCGAGTACGGAGGGCACACGGTTAAGCTG
GGAGAGGATGAGTACCAGTTGTTTAGGGATGAGGATTTGCTGGGGAAGTT
TACGTAGATCTGAGTAAGGGTAAAAGGGAAAGAGGAAATGAAGGATGATG
ATATCCGGAGGGATAGCGCAGTGTTTGGGGCCGATTTTAAGGACAAGGTC
GAAGACAATGGGAGCACGGACATAGGGAGCGATGGACGGGGGCATGGAGG
GTCGGGAATCGAGAAGGAGGAGGAGGAGGGGGAAGATGAGGAGGAGGTGA
AGGAGAAGATGATTGACGGAATGTAGTATACCTTCGAACATGGTGGCCCA
TATTTCTTCGAAAGAAACAAACTTACCATCGACCCACACCCCGAAACCGA
ATCCAATAT
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protein sequence of jgi.p|Nanoce1779_2|584046

>mRNA_2976-protein ID=mRNA_2976-protein|Name=jgi.p|Nanoce1779_2|584046|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGG
RKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGKFT*
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mRNA from alignment at scaffold_7:388983..390268-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2976 ID=mRNA_2976|Name=jgi.p|Nanoce1779_2|584046|organism=Nannochloropsis oceanica|type=mRNA|length=1286bp|location=Sequence derived from alignment at scaffold_7:388983..390268- (Nannochloropsis oceanica)
CACAAGAAGAACAATCGAGAAAGAGAGCGGAGGCAAGTGCGCCGCTTAGG
TCTGATCTCGAGTGAAAGAGAACGTACAGGAGGATGAGATGGTGTAGCCA
GCTACTGAATTGATCTCTCACCATTTTTCACTCCGCTCTGCCCTACAACA
CACAGCCTCTCACCCGAGACTCCCCCTTTAGACGACCTCCCCAGCTCCAC
TCAGTCAGCCATGGTAGGTACTTTTAGGGGGGGTCAGAGACTGGAATAAA
TAACTTGTGAGTGAATAGTTTATAACATGAGCAACGTTCAGGGAAAGAGG
AGGGCTGGACACTTGTACGGTTCGAGGAGGGATTGATACAGCGCGAGAAT
GTTGTGCGTGAGACCTAGGATAGAGGAGGCTGGGGCTGATGCATGACGAT
GAGTATGCACAGATGGAGAGCCGAGAGACAACTCACTGCAGCTCGACAAT
GAGCACCAATGTCGCTCTCAGCGCCAGCTTATACGAGTGCTGTGTCTGCG
AGGTGCCAGGCTTGTCTTGTCCGCCCCTTGCCTTCGCCCTCCCCAGTACG
CGACTCCATGTCGTATGCCTTTCCCCGGTTTACCTTAGTGCCTTTCAAGC
GCTACTATCACTCCCGTGCCTTCATCACTTATGCTCAATCACGTTCTCCA
TCATCTCTACCTGCTCCCCTTCCACCATACTCACCCACAGTCTTTGCGTA
AGCTTATCCCCCTGGCAGACCGCATTCTTGTGCAGCGCATCCTGCCGAAG
ACCCAAACGGCCGGCGGTGTCTTCCTCCCCGAAACCAAACTCGACAAGCC
GAATGAAGCCAAAGTGATCGCCGTGGGTCCCGGTGGACGGAAGGCAGACG
GGTCGCTGATTCCCCCGAGCGTGAAGGAAGGGGACACGGTGTTGTTGCCC
GAGTACGGAGGGCACACGGTTAAGCTGGGAGAGGATGAGTACCAGTTGTT
TAGGGATGAGGATTTGCTGGGGAAGTTTACGTAGATCTGAGTAAGGGTAA
AAGGGAAAGAGGAAATGAAGGATGATGATATCCGGAGGGATAGCGCAGTG
TTTGGGGCCGATTTTAAGGACAAGGTCGAAGACAATGGGAGCACGGACAT
AGGGAGCGATGGACGGGGGCATGGAGGGTCGGGAATCGAGAAGGAGGAGG
AGGAGGGGGAAGATGAGGAGGAGGTGAAGGAGAAGATGATTGACGGAATG
TAGTATACCTTCGAACATGGTGGCCCATATTTCTTCGAAAGAAACAAACT
TACCATCGACCCACACCCCGAAACCGAATCCAATAT
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Coding sequence (CDS) from alignment at scaffold_7:388983..390268-

>mRNA_2976 ID=mRNA_2976|Name=jgi.p|Nanoce1779_2|584046|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_7:388983..390268- (Nannochloropsis oceanica)
TCTTTGCGTAAGCTTATCCCCCTGGCAGACCGCATTCTTGTGCAGCGCAT
CCTGCCGAAGACCCAAACGGCCGGCGGTGTCTTCCTCCCCGAAACCAAAC
TCGACAAGCCGAATGAAGCCAAAGTGATCGCCGTGGGTCCCGGTGGACGG
AAGGCAGACGGGTCGCTGATTCCCCCGAGCGTGAAGGAAGGGGACACGGT
GTTGTTGCCCGAGTACGGAGGGCACACGGTTAAGCTGGGAGAGGATGAGT
ACCAGTTGTTTAGGGATGAGGATTTGCTGGGGAAGTTTACGTAGATGTCT
TTGCGTAAGCTTATCCCCCTGGCAGACCGCATTCTTGTGCAGCGCATCCT
GCCGAAGACCCAAACGGCCGGCGGTGTCTTCCTCCCCGAAACCAAACTCG
ACAAGCCGAATGAAGCCAAAGTGATCGCCGTGGGTCCCGGTGGACGGAAG
GCAGACGGGTCGCTGATTCCCCCGAGCGTGAAGGAAGGGGACACGGTGTT
GTTGCCCGAGTACGGAGGGCACACGGTTAAGCTGGGAGAGGATGAGTACC
AGTTGTTTAGGGATGAGGATTTGCTGGGGAAGTTTACGTAGATG
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Synonyms
Publications