jgi.p|Nanoce1779_2|584034, mRNA_2972 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584034
Unique NamemRNA_2972
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1676
Alignment locationscaffold_7:376275..378167 -

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Properties
Property NameValue
TranscriptId584120
TrackFilteredModels2
ProteinId584034
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:376275..378167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584034gene_2972Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584034mRNA_2972-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2972CDS_2972Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2972 ID=mRNA_2972|Name=jgi.p|Nanoce1779_2|584034|organism=Nannochloropsis oceanica|type=mRNA|length=1676bp
GGGGGGCCGTTCGCGTCGTTTGAAGCGGTTCGGACGCTGGGCATGTGCAT
GATCCTGCTTGGCCACACGCTGTGAGTATACTCTTGTGCGCAAATCAACC
TACCCTTTTGCCGTATCTTGTTCTCAGTTACAGATATTGTCTTTCAGTTC
CGCTTTCATGGTACGCACTCTCACAAATAACGCCCTTCCAACCTTACTCC
AGGTTCTTCAATCTAACCGTCGTCGGGGTGACCAACCCCCGCGAATCGCT
GGGGTTCTACGGCCGAGGCTTCTTGGCAACCATGCCAGGTTTGATCGCGG
ATGGTTCATTGTTGGGGGTGGATACGTTCTTAGTCCTTGCTGGTTTCTTG
GCTTTCTTTCTCTTTTTGAAAGAACTGGGCAAGCGGATGACATCCCCTCA
CAGTAGGAAGGGATCCGATGCAGGAGCTGCAGCTGGCCCTACACTCAAAA
GCACGTCCACCAGCACCAGCGCTAAAAATGGCCGGAAGCTGTGTCAGATG
GCCTTGGTCTCCTACGTCCGTCGCTACCTGCGTCTGACACCCGCCTACGC
TGTAATGCTCCTGATTTTTACCGCCCTTGCCCCGTTGATGAGCAGCGCTC
CTCCCTCCCCCACTGGAATTATGGTCGAGGCACAACAGTGCAGTGAAAAA
TGGTGGCAGAACTTATTGTACATCAACAATATCCTCTCTAACCCTTACAC
TATGTGCTACCAAGCGTCGTGGTTCTTGGCCGTGGTGCAACAGCTCTTCC
TCCTCGTTCCGTGGGTGAGCGCGCTGGCCTTCTGGAGACCCAAATGGGGC
CTAGCGCTAGTGATGGGGTTGTGCCTGGCAAGCTACATGTACACGTTCAG
GGAGGCACAAAGGGAGGGGTGGAGGATCAATAGCATCGACCGACCGGGAT
TTCCCAAGTTTTTTGCGGATTTTTATGCGAGTACCTTTACCCGGATGCCA
ACTTTCTTGATTGGGGGGATGGCGGCGATTGTTTGGTACCATTGGGGAGA
ACGAATGGGAAAATATTGGGCTGTAAAAGAAGGGAAGGAGGGGAGGAGGG
TGTCTGTGCAGGTGGTGGTGGTGATGGCGGTGGCGATGGTGCTGTTCGCG
TTGACAATGTTCGGGCCGTATAGGGAGTTGGGATGGGCGCCCGGAAGCTG
GAGTCAGACGACGAGTAGCATGTATATCACCTTGTCTTTCTCGGGTTGGG
TGATGGGATTGGTATTGCTGTGTGGAGTGCTGGCCTTGGGGAGGGGAGGC
TGGATAAAGAAGTTTTTGGAGTTACCGTTTTGGGCGGTTCCTTCCAGGTT
GACGTACAGCACGTACTTGGTTCATCCGATGGTCATTTTAACCGTCATCG
GCTCAGATGGTGGGCAGCCCTTCCACTTCTCCATGCTCCATGTCTTTAAT
GCCTTCGTTGGCTACTCCACCTTATCGGCGATCTCGGCTGTTGTGTTTTT
CTTCTTGGTCGAAGCCCCGTTCGGGGAGATGGAACGCTTGCTTTTCTCTC
GGTTGCCGCCACCGTCATCGTCTTCGCAGGTACTGGTCAAGATCAAGGGG
ATAGAGGGAGTAGAGAATAGAGAGCAGGAGAAAAACGAGGAGGCAATGGT
CGTTATCTCACCAGAGGCGGTGGGAGAGGAAAGAATGGAGGAGAGGGTGG
GCTAGGGTACGGTGTATTTGAGCCTG
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protein sequence of jgi.p|Nanoce1779_2|584034

>mRNA_2972-protein ID=mRNA_2972-protein|Name=jgi.p|Nanoce1779_2|584034|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp
MPGLIADGSLLGVDTFLVLAGFLAFFLFLKELGKRMTSPHSRKGSDAGAA
AGPTLKSTSTSTSAKNGRKLCQMALVSYVRRYLRLTPAYAVMLLIFTALA
PLMSSAPPSPTGIMVEAQQCSEKWWQNLLYINNILSNPYTMCYQASWFLA
VVQQLFLLVPWVSALAFWRPKWGLALVMGLCLASYMYTFREAQREGWRIN
SIDRPGFPKFFADFYASTFTRMPTFLIGGMAAIVWYHWGERMGKYWAVKE
GKEGRRVSVQVVVVMAVAMVLFALTMFGPYRELGWAPGSWSQTTSSMYIT
LSFSGWVMGLVLLCGVLALGRGGWIKKFLELPFWAVPSRLTYSTYLVHPM
VILTVIGSDGGQPFHFSMLHVFNAFVGYSTLSAISAVVFFFLVEAPFGEM
ERLLFSRLPPPSSSSQVLVKIKGIEGVENREQEKNEEAMVVISPEAVGEE
RMEERVG*
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mRNA from alignment at scaffold_7:376275..378167-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2972 ID=mRNA_2972|Name=jgi.p|Nanoce1779_2|584034|organism=Nannochloropsis oceanica|type=mRNA|length=1893bp|location=Sequence derived from alignment at scaffold_7:376275..378167- (Nannochloropsis oceanica)
GGGGGGCCGTTCGCGTCGTTTGAAGCGGTTCGGACGCTGGGCATGTGCAT
GATCCTGCTTGGCCACACGCTGTGAGTATACTCTTGTGCGCAAATCAACC
TACCCTTTTGCCGTATCTTGTTCTCAGTTACAGATATTGTCTTTCAGTTC
CGCTTTCATGGTACGCACTCTCACAAATAACGCCCTTCCAACCTTACTCC
AGGTTCTTCAATCTAACCGTCGTCGGGGTGACCAACCCCCGCGAATCGCT
GGGGTTCTACGGCCGAGGCTTCTTGGCAACCATGCCAGGTTTGATCGCGG
ATGGTTCATTGTTGGGGGTGGATACGTTCTTAGTCCTTGCTGGTTTCTTG
GCTTTCTTTCTCTTTTTGAAAGAACTGGGCAAGCGGATGACATCCCCTCA
CAGTAGGAAGGGATCCGATGCAGGAGCTGCAGCTGGCCCTACACTCAAAA
GCACGTCCACCAGCACCAGCGCTAAAAATGGCCGGAAGCTGTGTCAGATG
GCCTTGGTCTCCTACGTCCGTCGCTACCTGCGTCTGACACCCGCCTACGC
TGTAATGCTCCTGATTTTTACCGCCCTTGCCCCGTTGATGAGCAGCGCTC
CTCCCTCCCCCACTGGAATTATGGTCGAGGCACAACAGTGCAGTGAAAAA
TGGTGGCAGAACTTATTGTACATCAACAATATCCTCTCTAACCCTTACAC
TATGTGCTACCAAGCGTCGTGGTTCTTGGCCGTGGTGCAACAGCTCTTCC
TCCTCGTTCCGTGGGTGAGCGCGCTGGCCTTCTGGAGACCCAAATGGGGC
CTAGCGCTAGTGATGGGGTTGTGCCTGGCAAGCTACATGTACACGTTCAG
GGAGGCACAAAGGGAGGGGTGGAGGATCAATAGCATCGACCGACCGGGAT
TTCCCAAGTTTTTTGCGGATTTTTATGCGAGTACCTTTACCCGGATGCCA
ACTTTCTTGATTGGGGGGATGGCGGCGATTGTTTGGTACCATTGGGGAGA
ACGAATGGGAAAATATTGGGCTGTAAAAGAAGGGAAGGAGGGGAGGAGGG
TGTCTGTGCAGGTGGTGGTGGTGATGGCGGTGGCGATGGTGCTGTTCGCG
TTGACAATGTTCGGGCCGTATAGGGAGTTGGGATGGGCGCCCGGAAGCTG
GAGTCAGACGACGAGTAGCATGTATATCACCTTGTCTTTCTCGGGTTGGG
TGATGGGATTGGTATTGCTGTGTGGAGTGCTGGCCTTGGGGAGGGGAGGC
TGGATAAAGAAGTTTTTGGAGTTACCGTTTTGGGCGGTTCCTTCCAGGTT
GACGTACAGCACGTACTTGGTTCATCCGATGGTAAGTGGAGGAAGGGAAG
GAGCGAGAGAGGGAGGGAGAGAGGGTATGGTATAGCCGAGGGAAAGGGAA
AGGTCGATGGCCTCCACGTATGCATGTTCGCCACTCTTATCTCTTATCTT
CAATTGCTGTGCTCTTCTACTCATTTATACCCTCAGTCTTCAAAAGCGGA
ACAGCTTTAATTATTCAACCTCTACATTTCCCTCCGAACAAAATACAGGT
CATTTTAACCGTCATCGGCTCAGATGGTGGGCAGCCCTTCCACTTCTCCA
TGCTCCATGTCTTTAATGCCTTCGTTGGCTACTCCACCTTATCGGCGATC
TCGGCTGTTGTGTTTTTCTTCTTGGTCGAAGCCCCGTTCGGGGAGATGGA
ACGCTTGCTTTTCTCTCGGTTGCCGCCACCGTCATCGTCTTCGCAGGTAC
TGGTCAAGATCAAGGGGATAGAGGGAGTAGAGAATAGAGAGCAGGAGAAA
AACGAGGAGGCAATGGTCGTTATCTCACCAGAGGCGGTGGGAGAGGAAAG
AATGGAGGAGAGGGTGGGCTAGGGTACGGTGTATTTGAGCCTG
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Coding sequence (CDS) from alignment at scaffold_7:376275..378167-

>mRNA_2972 ID=mRNA_2972|Name=jgi.p|Nanoce1779_2|584034|organism=Nannochloropsis oceanica|type=CDS|length=2748bp|location=Sequence derived from alignment at scaffold_7:376275..378167- (Nannochloropsis oceanica)
GTCATTTTAACCGTCATCGGCTCAGATGGTGGGCAGCCCTTCCACTTCTC
CATGCTCCATGTCTTTAATGCCTTCGTTGGCTACTCCACCTTATCGGCGA
TCTCGGCTGTTGTGTTTTTCTTCTTGGTCGAAGCCCCGTTCGGGGAGATG
GAACGCTTGCTTTTCTCTCGGTTGCCGCCACCGTCATCGTCTTCGCAGGT
ACTGGTCAAGATCAAGGGGATAGAGGGAGTAGAGAATAGAGAGCAGGAGA
AAAACGAGGAGGCAATGGTCGTTATCTCACCAGAGGCGGTGGGAGAGGAA
AGAATGGAGGAGAGGGTGGGCTAGATGCCAGGTTTGATCGCGGATGGTTC
ATTGTTGGGGGTGGATACGTTCTTAGTCCTTGCTGGTTTCTTGGCTTTCT
TTCTCTTTTTGAAAGAACTGGGCAAGCGGATGACATCCCCTCACAGTAGG
AAGGGATCCGATGCAGGAGCTGCAGCTGGCCCTACACTCAAAAGCACGTC
CACCAGCACCAGCGCTAAAAATGGCCGGAAGCTGTGTCAGATGGCCTTGG
TCTCCTACGTCCGTCGCTACCTGCGTCTGACACCCGCCTACGCTGTAATG
CTCCTGATTTTTACCGCCCTTGCCCCGTTGATGAGCAGCGCTCCTCCCTC
CCCCACTGGAATTATGGTCGAGGCACAACAGTGCAGTGAAAAATGGTGGC
AGAACTTATTGTACATCAACAATATCCTCTCTAACCCTTACACTATGTGC
TACCAAGCGTCGTGGTTCTTGGCCGTGGTGCAACAGCTCTTCCTCCTCGT
TCCGTGGGTGAGCGCGCTGGCCTTCTGGAGACCCAAATGGGGCCTAGCGC
TAGTGATGGGGTTGTGCCTGGCAAGCTACATGTACACGTTCAGGGAGGCA
CAAAGGGAGGGGTGGAGGATCAATAGCATCGACCGACCGGGATTTCCCAA
GTTTTTTGCGGATTTTTATGCGAGTACCTTTACCCGGATGCCAACTTTCT
TGATTGGGGGGATGGCGGCGATTGTTTGGTACCATTGGGGAGAACGAATG
GGAAAATATTGGGCTGTAAAAGAAGGGAAGGAGGGGAGGAGGGTGTCTGT
GCAGGTGGTGGTGGTGATGGCGGTGGCGATGGTGCTGTTCGCGTTGACAA
TGTTCGGGCCGTATAGGGAGTTGGGATGGGCGCCCGGAAGCTGGAGTCAG
ACGACGAGTAGCATGTATATCACCTTGTCTTTCTCGGGTTGGGTGATGGG
ATTGGTATTGCTGTGTGGAGTGCTGGCCTTGGGGAGGGGAGGCTGGATAA
AGAAGTTTTTGGAGTTACCGTTTTGGGCGGTTCCTTCCAGGTTGACGTAC
AGCACGTACTTGGTTCATCCGATGGTCATTTTAACCGTCATCGGCTCAGA
TGGTGGGCAGCCCTTCCACTTCTCCATGCTCCATGTCTTTAATGCCTTCG
TTGGCTACTCCACCTTATCGGCGATCTCGGCTGTTGTGTTTTTCTTCTTG
GTCGAAGCCCCGTTCGGGGAGATGGAACGCTTGCTTTTCTCTCGGTTGCC
GCCACCGTCATCGTCTTCGCAGGTACTGGTCAAGATCAAGGGGATAGAGG
GAGTAGAGAATAGAGAGCAGGAGAAAAACGAGGAGGCAATGGTCGTTATC
TCACCAGAGGCGGTGGGAGAGGAAAGAATGGAGGAGAGGGTGGGCTAGAT
GCCAGGTTTGATCGCGGATGGTTCATTGTTGGGGGTGGATACGTTCTTAG
TCCTTGCTGGTTTCTTGGCTTTCTTTCTCTTTTTGAAAGAACTGGGCAAG
CGGATGACATCCCCTCACAGTAGGAAGGGATCCGATGCAGGAGCTGCAGC
TGGCCCTACACTCAAAAGCACGTCCACCAGCACCAGCGCTAAAAATGGCC
GGAAGCTGTGTCAGATGGCCTTGGTCTCCTACGTCCGTCGCTACCTGCGT
CTGACACCCGCCTACGCTGTAATGCTCCTGATTTTTACCGCCCTTGCCCC
GTTGATGAGCAGCGCTCCTCCCTCCCCCACTGGAATTATGGTCGAGGCAC
AACAGTGCAGTGAAAAATGGTGGCAGAACTTATTGTACATCAACAATATC
CTCTCTAACCCTTACACTATGTGCTACCAAGCGTCGTGGTTCTTGGCCGT
GGTGCAACAGCTCTTCCTCCTCGTTCCGTGGGTGAGCGCGCTGGCCTTCT
GGAGACCCAAATGGGGCCTAGCGCTAGTGATGGGGTTGTGCCTGGCAAGC
TACATGTACACGTTCAGGGAGGCACAAAGGGAGGGGTGGAGGATCAATAG
CATCGACCGACCGGGATTTCCCAAGTTTTTTGCGGATTTTTATGCGAGTA
CCTTTACCCGGATGCCAACTTTCTTGATTGGGGGGATGGCGGCGATTGTT
TGGTACCATTGGGGAGAACGAATGGGAAAATATTGGGCTGTAAAAGAAGG
GAAGGAGGGGAGGAGGGTGTCTGTGCAGGTGGTGGTGGTGATGGCGGTGG
CGATGGTGCTGTTCGCGTTGACAATGTTCGGGCCGTATAGGGAGTTGGGA
TGGGCGCCCGGAAGCTGGAGTCAGACGACGAGTAGCATGTATATCACCTT
GTCTTTCTCGGGTTGGGTGATGGGATTGGTATTGCTGTGTGGAGTGCTGG
CCTTGGGGAGGGGAGGCTGGATAAAGAAGTTTTTGGAGTTACCGTTTTGG
GCGGTTCCTTCCAGGTTGACGTACAGCACGTACTTGGTTCATCCGATG
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Synonyms
Publications