jgi.p|Nanoce1779_2|584029, mRNA_2971 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584029
Unique NamemRNA_2971
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length428
Alignment locationscaffold_7:375004..375662 -

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Properties
Property NameValue
TranscriptId584115
TrackFilteredModels2
ProteinId584029
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:375004..375662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584029gene_2971Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584029mRNA_2971-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2971CDS_2971Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2971 ID=mRNA_2971|Name=jgi.p|Nanoce1779_2|584029|organism=Nannochloropsis oceanica|type=mRNA|length=428bp
AGGACAGTTGTTACGCTTTGGCCTGCATCATTTCCCCTTCCTGGCCTCCT
GGTTTCTTCTCTTCCCATTTCCTACGCCTGCTGACTTCGTCGCTTATGGC
CACCTTCCTCGCCTTCACCATTGGGGCGGGCGCGGCATCCGCCTGCCTCT
ACGAAGCCAGCCTGGCCCTCGACCAGTATGCCACAGCTTCGAATCCTCGG
CGGTATTGTGACAAGGGCATCGAGCCCATCCGTGGCCCCTCCAGCATCAA
CCTCAGCACATACACAGACTACGTGTGGAGCAAGGGTGAACATCCCAAAT
TCACCGACATGAGGAGTCACTGGAACAATGCTGTTTGGTCGGTACGAGAG
AAGATAGTCAAATACGTAGAAGATATCAAGAAATGAGAAGTGAGAAAGGC
GCAGAAGAAATAAACTCAAAAAATAGTG
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protein sequence of jgi.p|Nanoce1779_2|584029

>mRNA_2971-protein ID=mRNA_2971-protein|Name=jgi.p|Nanoce1779_2|584029|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MATFLAFTIGAGAASACLYEASLALDQYATASNPRRYCDKGIEPIRGPSS
INLSTYTDYVWSKGEHPKFTDMRSHWNNAVWSVREKIVKYVEDIKK*
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mRNA from alignment at scaffold_7:375004..375662-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2971 ID=mRNA_2971|Name=jgi.p|Nanoce1779_2|584029|organism=Nannochloropsis oceanica|type=mRNA|length=659bp|location=Sequence derived from alignment at scaffold_7:375004..375662- (Nannochloropsis oceanica)
AGGACAGTTGTTACGCTTTGGCCTGCATCATTTCCCCTTCCTGGCCTCCT
GGTTTCTTCTCTTCCCATTTCCTACGCCTGCTGACTTCGTCGCTTATGGC
CACCTTCCTCGCCTTCACCATTGGGGCGGGCGCGGCATCCGCCTGCCTCT
ACGAAGCCAGCCTGGCCCTCGACCAGTATGCCACAGCTTCGAATCCTCGG
CGGTATTGTGACAAGGGCATCGAGCCCATCCGTGGCCCCTCCAGCATCAA
CCTCAGCGTACGTGAGGGCATGCAGTAGGAGGGGTAGAGGTGGGATTAGA
TGCGGGCTCGAGAGCCAGGATTGTACGCGTGACGCGCAGCCACACAGTAT
CTTCTGGCGGTTTCCCAAGATGGGGCTTGTAATTTCCCATCATACCGCTG
TATGGATCGTGCTCCGATGACTTCTCCCATGACCATCCCTAGCCTTCTCA
TTCTTTTCATTCATTCCTTCCGCCAACCCCTCCATCAGACATACACAGAC
TACGTGTGGAGCAAGGGTGAACATCCCAAATTCACCGACATGAGGAGTCA
CTGGAACAATGCTGTTTGGTCGGTACGAGAGAAGATAGTCAAATACGTAG
AAGATATCAAGAAATGAGAAGTGAGAAAGGCGCAGAAGAAATAAACTCAA
AAAATAGTG
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Coding sequence (CDS) from alignment at scaffold_7:375004..375662-

>mRNA_2971 ID=mRNA_2971|Name=jgi.p|Nanoce1779_2|584029|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_7:375004..375662- (Nannochloropsis oceanica)
ACATACACAGACTACGTGTGGAGCAAGGGTGAACATCCCAAATTCACCGA
CATGAGGAGTCACTGGAACAATGCTGTTTGGTCGGTACGAGAGAAGATAG
TCAAATACGTAGAAGATATCAAGAAATGAATGGCCACCTTCCTCGCCTTC
ACCATTGGGGCGGGCGCGGCATCCGCCTGCCTCTACGAAGCCAGCCTGGC
CCTCGACCAGTATGCCACAGCTTCGAATCCTCGGCGGTATTGTGACAAGG
GCATCGAGCCCATCCGTGGCCCCTCCAGCATCAACCTCAGCACATACACA
GACTACGTGTGGAGCAAGGGTGAACATCCCAAATTCACCGACATGAGGAG
TCACTGGAACAATGCTGTTTGGTCGGTACGAGAGAAGATAGTCAAATACG
TAGAAGATATCAAGAAATGAATGGCCACCTTCCTCGCCTTCACCATTGGG
GCGGGCGCGGCATCCGCCTGCCTCTACGAAGCCAGCCTGGCCCTCGACCA
GTATGCCACAGCTTCGAATCCTCGGCGGTATTGTGACAAGGGCATCGAGC
CCATCCGTGGCCCCTCCAGCATCAACCTCAGC
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Synonyms
Publications